Rorug02G0086800

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014987
Physical Location & Seq
Forward (+)
6907515 .. 6908468
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0086800.1

Sequence Viewer

Length: 270 bp
ATGGCTCAGGCTCTTCAGGAGGAATTTAAAGAGTATGCAGAGAAGGCCAAGTCTCTGCCCTCAACAACAAAGGATGCAGATAAACTAGTACTCTACGGCCTATACAAGCAAGCAACCATCGGCTCCGTAAATACTAATCGACCTGGGTTCTTTAGCCCAACTGAGAGGGCCAAATGGGATGCTTGGAAAGCAGTTGAAGGAAAGAGCCAAGAAGAAGCGATTGCTGAATACATTGAAAAGGTGAAGCAGCTGCTAGCAGCTTCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002684 GO:0002697 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009615 GO:0009626 GO:0009889 GO:0009987 GO:0010112 GO:0010363 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0012501 GO:0012505 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031410 GO:0031935 GO:0031982 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0033554 GO:0034050 GO:0034052 GO:0034641 GO:0043067 GO:0043068 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050688 GO:0050691 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1901672 GO:1902275 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

89

Amino Acids

9.94

Weight (kDa)

6.28

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 6 - 81 8.5e-27 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36270 AT4G36280 AT4G36290
fragaria_vesca FvH4_1g12391 FvH4_1g12391
malus_domestica MD02G1137200.v1.1
prunus_persica Prupe.7G163400_v2.0.a1
pyrus_communis pycom02g10860
rosa_chinensis RchiOBHm_Chr2g0100251
rosa_multiflora Rmu_sc0002547.1_g000014
rosa_rugosa Rorug02G0086800
rosa_samantha Rh2AG135800 Rh2BG139300 Rh2CG141100 Rh2DG141300
rosa_wichuraiana Rw2G010620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 1 cut(s) 90
AgsI TTSAA 2 cut(s) 197, 236
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 250, 260
AluI AGCT 2 cut(s) 250, 260
Alw26I GTCTC 1 cut(s) 57
AoxI GGCC 3 cut(s) 45, 97, 168
ApeKI GCWGC 3 cut(s) 247, 250, 257
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 253
AsuNHI GCTAGC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 237, 259
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 2 cut(s) 86, 254
BisI GCNGC 3 cut(s) 248, 251, 258
BlsI GCNGC 3 cut(s) 249, 252, 259
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 64, 169
BmtI GCTAGC 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 79, 184
BseMII CTCAG 2 cut(s) 20, 153
BseXI GCAGC 2 cut(s) 237, 259
BshFI GGCC 3 cut(s) 47, 99, 170
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 3 cut(s) 47, 99, 170
BspANI GGCC 3 cut(s) 47, 99, 170
BspCNI CTCAG 2 cut(s) 19, 154
BspLI GGNNCC 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 257
BspQI GCTCTTC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 111, 255
BstDEI CTNAG 2 cut(s) 6, 162
BstF5I GGATG 2 cut(s) 79, 184
BstMAI GTCTC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 44, 188
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 237, 259
BsuRI GGCC 3 cut(s) 47, 99, 170
BtsCI GGATG 2 cut(s) 79, 184
Cac8I GCNNGC 2 cut(s) 111, 255
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 89
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 6, 162
DraI TTTAAA 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 142
FaiI YATR 3 cut(s) 36, 103, 268
Fnu4HI GCNGC 3 cut(s) 248, 251, 258
FokI GGATG 2 cut(s) 86, 191
Fsp4HI GCNGC 3 cut(s) 248, 251, 258
FspBI CTAG 2 cut(s) 86, 254
GluI GCNGC 3 cut(s) 248, 251, 258
HaeIII GGCC 3 cut(s) 47, 99, 170
HphI GGTGA 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 37, 191
HpyCH4V TGCA 2 cut(s) 38, 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 188
HpyF3I CTNAG 2 cut(s) 6, 162
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 3 cut(s) 2, 129, 156
Lsp1109I GCAGC 2 cut(s) 237, 259
LweI GCATC 2 cut(s) 64, 169
MaeI CTAG 2 cut(s) 86, 254
MboII GAAGA 2 cut(s) 5, 224
MluCI AATT 1 cut(s) 23
MnlI CCTC 3 cut(s) 13, 70, 159
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 44, 188
NheI GCTAGC 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 249, 252, 259
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 248, 251, 258
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 144
SetI ASST 4 cut(s) 145, 243, 252, 262
SfaNI GCATC 2 cut(s) 64, 169
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 1 cut(s) 23
SspMI CTAG 2 cut(s) 86, 254
StyD4I CCNGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 23
TatI WGTACW 1 cut(s) 88
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 3 cut(s) 247, 250, 257
TspGWI ACGGA 1 cut(s) 115
XapI RAATTY 1 cut(s) 23
XspI CTAG 2 cut(s) 86, 254
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.