Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013055

Physical Location & Seq

Genomic Coordinates Reverse (-)

12931415 .. 12934650

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0147200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGCTGATGGGGATTCGGATTCTGACAGTAGCTATGTCCTTCTGAGTGATGGCAATTCTGTGGGTAGTGATTCTGAGAACTATGTCATTGTGGGTAAAGACGACTATATGAGTGCTGATTCCGGTGAAGATCTGACTGGTGGAAGCCAAAATGAGTTGGAGAAGGTTGTGGTTGATGAAAATCATGTGAGTTCTGACTCTGAAAATGATCAATTTTGTGATAGCCAACAACAGTTGGAGAAGAATGGAGATGATGACAGTAATGCGAGTACTGATTCTGATGAAGATCTGTCTGTTGAGAGAAGACACCAGTTGAAGAAGCTTGTGGATTATTCCAGTTCTGATTCTGATAAAGATCTATTGGATTGTGGTGGATCACTGTGGAATGAAAGACGTGTGGCTACCAATGAGTTTCACAGATATCCATGTAAAAGAATTGGTCATGTTTGTGGAGAAGATTGCTATGAATTGTCTGGAGAGAAAAAGGCCAAGGACAATATTGACATCAATAATGTTACAATGGAGTATGTTCTTCCATTCCTCCCTGCCAAAACACTTTGCAGGTTCAGAAGCGTTGGCAAACAGTGGGATGAGTGGATTACCTCTCCTTTTTTCATTCACAAGCAGGCTTACTCCTTCCGGAACATCTCTGGTCTTTTCTGTCAACTTCCTGGGGAAAAGCCTTCTTTTGTCTCGCTCAATAGAGCTGCTTATGGAATTCCCAATCCTTCCCTTAATTTCTTGCCTGAACCAGTTACTGTAAGGACTGCTTGTAATGGCCTGCTCTGCTGCGAAAGCTGCGATGGAGAAAATACTTACTACATTTGCAATCCTGTGAACAAGGAATGGACAGTGCTTCCCAAGTCAAAGCCTTATCATGGACATGAATCAGTTGTAGCACTAGCTTTTGAGCCTTCTGTGCTTGACTTTGAAGAACATTTTCAACTTGTGTGTGCCTTCTCTGTACCTGATGAGCCAGTGATCTGTTTTGATATATACTCTTCAAGTTCGAGGTCTTGGAAACTCTCTCAGACAGAATGCTGTGAGATTGATGCTCTGCATTTGAAAGGTCATGGGATCTTTTTGAAGGGAATGGTATTCTGGGAAACTCTTACTGGCGCAATTTTGGCTTTTAATCTGAAGGAGGAGCAATATGGTATTTTGCCTCTCCCTCCTCACAGCGGACCACTAGGTGTTATGGCAGAGATGTACGGCGAGCTGTGTTATATTCTGCCTGTTCTGGAAGACTATGTATACACCTTGGAGATCTATGGTGATATGGACATGAAACTGAAGCGCAGAATTCCTCTTGCTGATGGTATTTTCACCAATGCTTATGAAGAGTTGAGGGCTTTGGCTTGTGTAACTGATGATGTGGTGATCATGCTTCTTGGAATGAAATTGATTGCTTATCATGTGAAAGCAGAGAAGGCTGATATCATACATAGTTATACTGGGATTATTGCTGGATATGCAGGTTATCTTCCATATGTGAACAGCCTGGTGCACATAAATCACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

507

Amino Acids

56.71

Weight (kDa)

4.63

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
b-prop_At3g26010-like	PF24750	254 - 391	1.1e-08	F-box protein At3g26010-like, beta-propeller
FBA_3	PF08268	254 - 392	1.1e-06	F-box associated beta propeller domain
FBA_1	PF07734	256 - 394	8.8e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67470
fragaria_vesca	FvH4_1g17500 FvH4_1g17500 FvH4_1g17500
malus_domestica	MD02G1184200.v1.1 MD15G1295600.v1.1
prunus_persica	Prupe.6G222200_v2.0.a1 Prupe.6G222200_v2.0.a1
pyrus_communis	pycom02g14940 pycom15g25850
rosa_chinensis	RchiOBHm_Chr2g0107731
rosa_laevigata	RLG00000017611
rosa_multiflora	Rmu_sc0009624.1_g000008
rosa_roxburghii	Rroxscaffold_2G00135990
rosa_rugosa	Rorug02G0147200
rosa_samantha	Rh2BG209400 Rh2CG201600
rosa_wichuraiana	Rw2G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	552, 1466
AccI	GTMKAC	1 cut(s)	1254
AccIII	TCCGGA	1 cut(s)	639
AciI	CCGC	1 cut(s)	1182
AclWI	GGATC	2 cut(s)	382, 1085
AcsI	RAATTY	2 cut(s)	717, 1302
AcuI	CTGAAG	2 cut(s)	1160, 1313
AdeI	CACNNNGTG	1 cut(s)	1193
AfaI	GTAC	3 cut(s)	271, 966, 1211
AfiI	CCNNNNNNNGG	2 cut(s)	878, 1181
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	6 cut(s)	316, 932, 944, 1005, 1066, 1087
AjiI	CACGTC	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	670, 1500
AluBI	AGCT	6 cut(s)	33, 322, 707, 798, 905, 1219
AluI	AGCT	6 cut(s)	33, 322, 707, 798, 905, 1219
Alw21I	GWGCWC	1 cut(s)	1509
Alw26I	GTCTC	1 cut(s)	697
Alw44I	GTGCAC	1 cut(s)	1505
AlwI	GGATC	2 cut(s)	382, 1085
AlwNI	CAGNNNCTG	1 cut(s)	758
Aor13HI	TCCGGA	1 cut(s)	639
AoxI	GGCC	2 cut(s)	486, 778
ApaLI	GTGCAC	1 cut(s)	1505
ApeKI	GCWGC	3 cut(s)	707, 789, 798
ApoI	RAATTY	2 cut(s)	717, 1302
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	2 cut(s)	1121, 1299
AspS9I	GGNCC	1 cut(s)	1184
AsuHPI	GGTGA	5 cut(s)	137, 1286, 1318, 1390, 1508
AvaII	GGWCC	1 cut(s)	1184
BaeGI	GKGCMC	1 cut(s)	1509
BbsI	GAAGAC	2 cut(s)	310, 1251
Bbv12I	GWGCWC	1 cut(s)	1509
BbvI	GCAGC	3 cut(s)	694, 776, 785
BccI	CCATC	4 cut(s)	2, 44, 797, 1310
BceAI	ACGGC	1 cut(s)	1228
BciT130I	CCWGG	2 cut(s)	672, 1502
BclI	TGATCA	2 cut(s)	208, 1380
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	2 cut(s)	902, 1190
BfuAI	ACCTGC	2 cut(s)	552, 1466
BglII	AGATCT	4 cut(s)	130, 286, 355, 1266
BisI	GCNGC	3 cut(s)	708, 790, 799
BlsI	GCNGC	3 cut(s)	709, 791, 800
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	672, 1502
Bme18I	GGWCC	1 cut(s)	1184
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	1184
BmrFI	CCNGG	2 cut(s)	672, 1502
BmrI	ACTGGG	1 cut(s)	1464
BmsI	GCATC	1 cut(s)	1042
BmuI	ACTGGG	1 cut(s)	1464
BpiI	GAAGAC	2 cut(s)	310, 1251
BpmI	CTGGAG	1 cut(s)	495
BsaBI	GATNNNNATC	3 cut(s)	180, 285, 354
BsaJI	CCNNGG	3 cut(s)	489, 671, 1260
BsaWI	WCCGGW	2 cut(s)	122, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	878, 1181
Bse1I	ACTGG	7 cut(s)	142, 310, 336, 752, 977, 1120, 1459
Bse8I	GATNNNNATC	3 cut(s)	180, 285, 354
BseAI	TCCGGA	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	672, 1502
BseDI	CCNNGG	3 cut(s)	489, 671, 1260
BseGI	GGATG	1 cut(s)	595
BseJI	GATNNNNATC	3 cut(s)	180, 285, 354
BseLI	CCNNNNNNNGG	2 cut(s)	878, 1181
BseMII	CTCAG	3 cut(s)	35, 66, 1043
BseNI	ACTGG	7 cut(s)	142, 310, 336, 752, 977, 1120, 1459
BseRI	GAGGAG	2 cut(s)	1160, 1164
BseSI	GKGCMC	1 cut(s)	1509
BseXI	GCAGC	3 cut(s)	694, 776, 785
BshFI	GGCC	2 cut(s)	488, 780
BsiHKAI	GWGCWC	1 cut(s)	1509
BsiSI	CCGG	2 cut(s)	123, 640
BslI	CCNNNNNNNGG	2 cut(s)	878, 1181
BsmAI	GTCTC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	1043
BsnI	GGCC	2 cut(s)	488, 780
Bsp1286I	GDGCHC	1 cut(s)	1509
Bsp13I	TCCGGA	1 cut(s)	639
Bsp143I	GATC	9 cut(s)	130, 208, 286, 355, 374, 981, 1077, 1266, 1380
BspACI	CCGC	1 cut(s)	1182
BspANI	GGCC	2 cut(s)	488, 780
BspCNI	CTCAG	3 cut(s)	36, 67, 1042
BspEI	TCCGGA	1 cut(s)	639
BspMI	ACCTGC	2 cut(s)	552, 1466
BspPI	GGATC	2 cut(s)	382, 1085
BsrI	ACTGG	7 cut(s)	142, 310, 336, 752, 977, 1120, 1459
BssECI	CCNNGG	3 cut(s)	489, 671, 1260
BssMI	GATC	9 cut(s)	130, 208, 286, 355, 374, 981, 1077, 1266, 1380
BssNAI	GTATAC	1 cut(s)	1255
BssT1I	CCWWGG	2 cut(s)	489, 1260
Bst1107I	GTATAC	1 cut(s)	1255
Bst2UI	CCWGG	2 cut(s)	672, 1502
Bst4CI	ACNGT	7 cut(s)	29, 234, 260, 381, 585, 760, 853
Bst6I	CTCTTC	2 cut(s)	1006, 1335
BstC8I	GCNNGC	3 cut(s)	627, 782, 1217
BstDEI	CTNAG	3 cut(s)	44, 75, 1029
BstF5I	GGATG	1 cut(s)	595
BstHHI	GCGC	2 cut(s)	1121, 1299
BstKTI	GATC	9 cut(s)	133, 211, 289, 358, 377, 984, 1080, 1269, 1383
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	9 cut(s)	130, 208, 286, 355, 374, 981, 1077, 1266, 1380
BstMWI	GCNNNNNNNGC	7 cut(s)	786, 795, 798, 919, 1127, 1430, 1472
BstNI	CCWGG	2 cut(s)	672, 1502
BstSCI	CCNGG	2 cut(s)	670, 1500
BstSLI	GKGCMC	1 cut(s)	1509
BstV1I	GCAGC	3 cut(s)	694, 776, 785
BstV2I	GAAGAC	2 cut(s)	310, 1251
BstX2I	RGATCY	5 cut(s)	130, 286, 355, 1077, 1266
BstYI	RGATCY	5 cut(s)	130, 286, 355, 1077, 1266
BstZ17I	GTATAC	1 cut(s)	1255
BsuRI	GGCC	2 cut(s)	488, 780
BtgZI	GCGATG	1 cut(s)	816
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	4 cut(s)	377, 590, 858, 984
BveI	ACCTGC	2 cut(s)	552, 1466
Cac8I	GCNNGC	3 cut(s)	627, 782, 1217
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	2 cut(s)	1121, 1299
Cfr13I	GGNCC	1 cut(s)	1184
Csp6I	GTAC	3 cut(s)	270, 965, 1210
CviQI	GTAC	3 cut(s)	270, 965, 1210
DdeI	CTNAG	3 cut(s)	44, 75, 1029
DpnI	GATC	9 cut(s)	132, 210, 288, 357, 376, 983, 1079, 1268, 1382
DpnII	GATC	9 cut(s)	130, 208, 286, 355, 374, 981, 1077, 1266, 1380
DraIII	CACNNNGTG	1 cut(s)	1193
Eam1104I	CTCTTC	2 cut(s)	1006, 1335
EarI	CTCTTC	2 cut(s)	1006, 1335
Eco130I	CCWWGG	2 cut(s)	489, 1260
Eco32I	GATATC	2 cut(s)	422, 1438
Eco47I	GGWCC	1 cut(s)	1184
Eco57I	CTGAAG	2 cut(s)	1160, 1313
EcoRI	GAATTC	2 cut(s)	717, 1302
EcoRII	CCWGG	2 cut(s)	670, 1500
EcoRV	GATATC	2 cut(s)	422, 1438
EcoT14I	CCWWGG	2 cut(s)	489, 1260
ErhI	CCWWGG	2 cut(s)	489, 1260
FalI	AAGNNNNNCTT	2 cut(s)	754, 786
FauNDI	CATATG	1 cut(s)	1489
FbaI	TGATCA	2 cut(s)	208, 1380
FblI	GTMKAC	1 cut(s)	1254
Fnu4HI	GCNGC	3 cut(s)	708, 790, 799
FokI	GGATG	1 cut(s)	602
Fsp4HI	GCNGC	3 cut(s)	708, 790, 799
FspBI	CTAG	2 cut(s)	902, 1190
GlaI	GCGC	2 cut(s)	1120, 1298
GluI	GCNGC	3 cut(s)	708, 790, 799
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	488, 780
HapII	CCGG	2 cut(s)	123, 640
HhaI	GCGC	2 cut(s)	1121, 1299
Hin6I	GCGC	2 cut(s)	1119, 1297
HinP1I	GCGC	2 cut(s)	1119, 1297
HincII	GTYRAC	1 cut(s)	665
HindII	GTYRAC	1 cut(s)	665
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	8 cut(s)	14, 20, 71, 119, 197, 275, 344, 887
HpaII	CCGG	2 cut(s)	123, 640
HphI	GGTGA	5 cut(s)	137, 1286, 1318, 1390, 1508
Hpy166II	GTNNAC	5 cut(s)	665, 838, 1255, 1495, 1507
Hpy188III	TCNNGA	3 cut(s)	474, 640, 1241
Hpy8I	GTNNAC	5 cut(s)	665, 838, 1255, 1495, 1507
HpyCH4III	ACNGT	7 cut(s)	29, 234, 260, 381, 585, 760, 853
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	5 cut(s)	561, 828, 1060, 1475, 1507
HpyF10VI	GCNNNNNNNGC	7 cut(s)	786, 795, 798, 919, 1127, 1430, 1472
HpyF3I	CTNAG	3 cut(s)	44, 75, 1029
HpySE526I	ACGT	1 cut(s)	394
HspAI	GCGC	2 cut(s)	1119, 1297
Kpn2I	TCCGGA	1 cut(s)	639
Ksp22I	TGATCA	2 cut(s)	208, 1380
Kzo9I	GATC	9 cut(s)	130, 208, 286, 355, 374, 981, 1077, 1266, 1380
LmnI	GCTCC	1 cut(s)	1147
Lsp1109I	GCAGC	3 cut(s)	694, 776, 785
LweI	GCATC	1 cut(s)	1042
MaeI	CTAG	2 cut(s)	902, 1190
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	3 cut(s)	514, 754, 1363
MalI	GATC	9 cut(s)	132, 210, 288, 357, 376, 983, 1079, 1268, 1382
MboI	GATC	9 cut(s)	130, 208, 286, 355, 374, 981, 1077, 1266, 1380
MflI	RGATCY	5 cut(s)	130, 286, 355, 1077, 1266
MhlI	GDGCHC	1 cut(s)	1509
MluCI	AATT	9 cut(s)	55, 212, 435, 467, 717, 736, 1122, 1302, 1400
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	2 cut(s)	138, 216
MnlI	CCTC	9 cut(s)	551, 613, 1005, 1138, 1176, 1182, 1185, 1317, 1341
MroI	TCCGGA	1 cut(s)	639
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	2 cut(s)	735, 1134
MslI	CAYNNNNRTG	2 cut(s)	447, 882
MspA1I	CMGCKG	1 cut(s)	1182
MspI	CCGG	2 cut(s)	123, 640
MspR9I	CCNGG	2 cut(s)	672, 1502
Mva1269I	GAATGC	1 cut(s)	1043
MvaI	CCWGG	2 cut(s)	672, 1502
MwoI	GCNNNNNNNGC	7 cut(s)	786, 795, 798, 919, 1127, 1430, 1472
NdeI	CATATG	1 cut(s)	1489
NdeII	GATC	9 cut(s)	130, 208, 286, 355, 374, 981, 1077, 1266, 1380
PctI	GAATGC	1 cut(s)	1043
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	7 cut(s)	14, 20, 71, 119, 275, 344, 887
PkrI	GCNGC	3 cut(s)	709, 791, 800
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	670, 1500
PspGI	CCWGG	2 cut(s)	670, 1500
PspPI	GGNCC	1 cut(s)	1184
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	5 cut(s)	130, 286, 355, 1077, 1266
RsaI	GTAC	3 cut(s)	271, 966, 1211
RsaNI	GTAC	3 cut(s)	270, 965, 1210
RseI	CAYNNNNRTG	2 cut(s)	447, 882
SaqAI	TTAA	2 cut(s)	735, 1134
SatI	GCNGC	3 cut(s)	708, 790, 799
Sau3AI	GATC	9 cut(s)	130, 208, 286, 355, 374, 981, 1077, 1266, 1380
Sau96I	GGNCC	1 cut(s)	1184
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	672, 1502
SduI	GDGCHC	1 cut(s)	1509
SfaNI	GCATC	1 cut(s)	1042
SinI	GGWCC	1 cut(s)	1184
SmiMI	CAYNNNNRTG	2 cut(s)	447, 882
Sse9I	AATT	9 cut(s)	55, 212, 435, 467, 717, 736, 1122, 1302, 1400
SsiI	CCGC	1 cut(s)	1182
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	902, 1190
StyD4I	CCNGG	2 cut(s)	670, 1500
StyI	CCWWGG	2 cut(s)	489, 1260
TaaI	ACNGT	7 cut(s)	29, 234, 260, 381, 585, 760, 853
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	1010
TasI	AATT	9 cut(s)	55, 212, 435, 467, 717, 736, 1122, 1302, 1400
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	7 cut(s)	14, 20, 71, 119, 275, 344, 887
Tru1I	TTAA	2 cut(s)	735, 1134
Tru9I	TTAA	2 cut(s)	735, 1134
TscAI	CASTG	4 cut(s)	384, 590, 858, 984
TseI	GCWGC	3 cut(s)	707, 789, 798
TspDTI	ATGAA	9 cut(s)	192, 297, 402, 480, 604, 900, 1301, 1353, 1412
TspRI	CASTG	4 cut(s)	384, 590, 858, 984
VneI	GTGCAC	1 cut(s)	1505
VpaK11BI	GGWCC	1 cut(s)	1184
XapI	RAATTY	2 cut(s)	717, 1302
XmiI	GTMKAC	1 cut(s)	1254
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	2 cut(s)	902, 1190
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.