Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0021426

Physical Location & Seq

Genomic Coordinates Reverse (-)

17912601 .. 17913983

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0192000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCGGTAGCAGAAGATCTACCCGAAGATATTATAGTTAACATCCTTACTTGGTTGCCCGTCAAGTCCTTAATCCGATTCACCTCCGTTTCGAAACGCCTGCATTCCATTATATTGTCCGATCCCAAATTCGCCCAATCCCAATTGAAAGCAGCTCGTCAGCAGAAAACCCTCAGCCGCAGACTCCTCGTCTCCACCGACGCCCGTCAACTCGAATCCCTACACTTGGATCATACGCCGTCGTTTGGAGAGCCTTCCTCCGTTAGAAAGTTCAGTTTCCCTTTCCAGCCACAATGGTCTGGTATGTCAAGTTATTTCAAGTTACTAGGCTCCTGCAATGGTCTTGTATTTGTAGCTGTTGATGAGGCATTGTTTTATATCTGGAACCCATCCATTGGATTCTTGAAGCAATTACCTGACCCAGGTTTTTCCTTGAATAAAAATGTGCTGGCATATTATGGTGTGGGCTATTTGTCCGCTACTGATGACTACAAAGTTTTGGTAGCCTCCTATAGCTTTCGTGAAGGGGGGTTACAGGTCCAGGTGTTCTCATTGACAACTCATCTTTGGCAGAGGATTGAACCCCCTGGCGGCTCCGATATTGAACTCGATCTTCAGGGGACTCTTTCGAATGATGCACTTCATTGGCTAAACTACTCCGTCGACGAGGATGAAATTGTTTCTTTTGACTTGGCTGTGCAGGAGTTCCGGAGAATGCGACTGCCTAATTTCGACCATGATGGTAAGAGTTTCAGCTATCTTGGGGTTTGTGGAGGGTGCCTGTGTGCGTCGCGTTATCTGGACGGTGCTTGTGACTCTATTGATTTCTGGGTCATGAAAGAATATGACGTGAGTGACTCGTGGACTATGCTCTTTAGCTTAAAGCTCTCCCATCCACCTGAGTTAAACTCGTGTTCCACAGAATTCTTGGTTGTGGAAAGTAGCACAGTTGCCGCGAATTGGACTGCCGAGGGGTTTGAGTTGATAAGGATTGACCATAAAGAAGATGAGAAGCTTGGGCAGTATATGCTTAAGGGGAATCAGATTTGTATGATTGAGTATGAAGAGAGTCTACTTTGGATTAGTAGTTATTATCTAGAACAAGAGAAAAAGCAGGTCAAGATACTCGAAACCCATCAGAAGGCCTCACAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

385

Amino Acids

43.74

Weight (kDa)

5.07

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	5 - 41	5.6e-07	F-box-like
F-box	PF00646	6 - 43	2.1e-09	F-box domain
FBA_3	PF08268	87 - 289	6.8e-16	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0022831
rosa_rugosa	Rorug02G0192000 Rorug02G0192100 Rorug06G0513300
rosa_samantha	Rh5CG175300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1105
AccB1I	GGYRCC	1 cut(s)	777
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccI	GTMKAC	2 cut(s)	663, 1072
AccII	CGCG	2 cut(s)	793, 956
AccIII	TCCGGA	1 cut(s)	708
AciI	CCGC	5 cut(s)	5, 178, 477, 591, 954
AclWI	GGATC	2 cut(s)	116, 237
AcsI	RAATTY	2 cut(s)	128, 923
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	7 cut(s)	226, 245, 395, 422, 590, 960, 1141
AflII	CTTAAG	1 cut(s)	1031
AgsI	TTSAA	6 cut(s)	148, 319, 406, 436, 581, 605
AhdI	GACNNNNNGTC	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	850
AjnI	CCWGG	3 cut(s)	421, 540, 586
AluBI	AGCT	8 cut(s)	155, 356, 516, 756, 879, 886, 1015, 1155
AluI	AGCT	8 cut(s)	155, 356, 516, 756, 879, 886, 1015, 1155
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	116, 237
Aor13HI	TCCGGA	1 cut(s)	708
AoxI	GGCC	1 cut(s)	1143
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	2 cut(s)	128, 923
AspS9I	GGNCC	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	73
AsuII	TTCGAA	2 cut(s)	92, 629
AvaII	GGWCC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	777
BarI	GAAGNNNNNNTAC	4 cut(s)	516, 548, 1056, 1088
BauI	CACGAG	2 cut(s)	859, 910
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	4 cut(s)	397, 734, 900, 1143
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	4 cut(s)	82, 116, 169, 203
BciT130I	CCWGG	3 cut(s)	423, 542, 588
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	2 cut(s)	326, 1097
BfmI	CTRYAG	1 cut(s)	511
BfrI	CTTAAG	1 cut(s)	1031
BfuAI	ACCTGC	1 cut(s)	1105
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	4 cut(s)	153, 178, 592, 954
BlsI	GCNGC	4 cut(s)	154, 179, 593, 955
Bme1390I	CCNGG	3 cut(s)	423, 542, 588
Bme18I	GGWCC	1 cut(s)	538
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmgBI	CACGTC	1 cut(s)	850
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	4 cut(s)	331, 386, 595, 779
BmrFI	CCNGG	3 cut(s)	423, 542, 588
BmsI	GCATC	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	204
BplI	GAGNNNNNCTC	4 cut(s)	242, 274, 893, 925
Bpu10I	CCTNAGC	1 cut(s)	173
Bpu14I	TTCGAA	2 cut(s)	92, 629
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	421, 586, 969
BsaWI	WCCGGW	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	7 cut(s)	226, 245, 395, 422, 590, 960, 1141
Bse3DI	GCAATG	1 cut(s)	343
BseAI	TCCGGA	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	423, 542, 588
BseDI	CCNNGG	3 cut(s)	421, 586, 969
BseGI	GGATG	4 cut(s)	42, 389, 676, 892
BseLI	CCNNNNNNNGG	7 cut(s)	226, 245, 395, 422, 590, 960, 1141
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	187, 891
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	719
Bsh1236I	CGCG	2 cut(s)	793, 956
BshFI	GGCC	1 cut(s)	1145
BshNI	GGYRCC	1 cut(s)	777
BsiSI	CCGG	1 cut(s)	709
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	7 cut(s)	226, 245, 395, 422, 590, 960, 1141
BsmAI	GTCTC	1 cut(s)	196
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	634
BsmI	GAATGC	2 cut(s)	103, 720
BsnI	GGCC	1 cut(s)	1145
Bsp119I	TTCGAA	2 cut(s)	92, 629
Bsp13I	TCCGGA	1 cut(s)	708
Bsp143I	GATC	4 cut(s)	16, 121, 229, 610
BspACI	CCGC	5 cut(s)	5, 178, 477, 591, 954
BspANI	GGCC	1 cut(s)	1145
BspCNI	CTCAG	2 cut(s)	186, 892
BspEI	TCCGGA	1 cut(s)	708
BspFNI	CGCG	2 cut(s)	793, 956
BspHI	TCATGA	1 cut(s)	834
BspLI	GGNNCC	4 cut(s)	331, 386, 595, 779
BspMI	ACCTGC	1 cut(s)	1105
BspPI	GGATC	2 cut(s)	116, 237
BspT104I	TTCGAA	2 cut(s)	92, 629
BspT107I	GGYRCC	1 cut(s)	777
BspTI	CTTAAG	1 cut(s)	1031
BsrDI	GCAATG	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	421, 586, 969
BssMI	GATC	4 cut(s)	16, 121, 229, 610
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	2 cut(s)	859, 910
Bst2BI	CACGAG	2 cut(s)	859, 910
Bst2UI	CCWGG	3 cut(s)	423, 542, 588
Bst4CI	ACNGT	2 cut(s)	806, 949
Bst6I	CTCTTC	1 cut(s)	1059
BstACI	GRCGYC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	1031
BstAPI	GCANNNNNTGC	1 cut(s)	1027
BstBI	TTCGAA	2 cut(s)	92, 629
BstC8I	GCNNGC	2 cut(s)	101, 450
BstDEI	CTNAG	2 cut(s)	173, 900
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	4 cut(s)	42, 389, 676, 892
BstFNI	CGCG	2 cut(s)	793, 956
BstKTI	GATC	4 cut(s)	19, 124, 232, 613
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	4 cut(s)	16, 121, 229, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	1027
BstNI	CCWGG	3 cut(s)	423, 542, 588
BstPAI	GACNNNNGTC	1 cut(s)	204
BstSCI	CCNGG	3 cut(s)	421, 540, 586
BstSFI	CTRYAG	1 cut(s)	511
BstUI	CGCG	2 cut(s)	793, 956
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	1145
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	4 cut(s)	42, 389, 676, 892
BveI	ACCTGC	1 cut(s)	1105
Cac8I	GCNNGC	2 cut(s)	101, 450
CciI	TCATGA	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	538
CseI	GACGC	2 cut(s)	209, 777
CviAII	CATG	2 cut(s)	737, 835
DdeI	CTNAG	2 cut(s)	173, 900
DpnI	GATC	4 cut(s)	18, 123, 231, 612
DpnII	GATC	4 cut(s)	16, 121, 229, 610
DriI	GACNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	1059
Eam1105I	GACNNNNNGTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	1059
Eco147I	AGGCCT	1 cut(s)	1145
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	923
EcoRII	CCWGG	3 cut(s)	421, 540, 586
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	2 cut(s)	740, 838
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	2 cut(s)	736, 834
FblI	GTMKAC	2 cut(s)	663, 1072
Fnu4HI	GCNGC	4 cut(s)	153, 178, 592, 954
FokI	GGATG	4 cut(s)	29, 376, 683, 879
Fsp4HI	GCNGC	4 cut(s)	153, 178, 592, 954
FspBI	CTAG	2 cut(s)	326, 1097
GluI	GCNGC	4 cut(s)	153, 178, 592, 954
HaeIII	GGCC	1 cut(s)	1145
HapII	CCGG	1 cut(s)	709
HgaI	GACGC	2 cut(s)	209, 777
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	740, 838
HincII	GTYRAC	3 cut(s)	40, 209, 664
HindII	GTYRAC	3 cut(s)	40, 209, 664
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	9 cut(s)	78, 183, 215, 399, 622, 815, 857, 1039, 1069
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	709
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	5 cut(s)	40, 209, 664, 864, 1073
Hpy188I	TCNGA	5 cut(s)	77, 121, 598, 1044, 1140
Hpy188III	TCNNGA	8 cut(s)	382, 403, 521, 709, 800, 835, 1097, 1120
Hpy8I	GTNNAC	5 cut(s)	40, 209, 664, 864, 1073
Hpy99I	CGWCG	5 cut(s)	203, 244, 665, 668, 793
HpyAV	CCTTC	3 cut(s)	264, 518, 1135
HpyCH4III	ACNGT	2 cut(s)	806, 949
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	4 cut(s)	103, 336, 638, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1027
HpyF3I	CTNAG	2 cut(s)	173, 900
HpySE526I	ACGT	1 cut(s)	849
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	740, 838
Kpn2I	TCCGGA	1 cut(s)	708
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	16, 121, 229, 610
LmnI	GCTCC	2 cut(s)	335, 599
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	326, 1097
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	4 cut(s)	321, 531, 812, 854
MalI	GATC	4 cut(s)	18, 123, 231, 612
MboI	GATC	4 cut(s)	16, 121, 229, 610
MboII	GAAGA	5 cut(s)	26, 38, 605, 1016, 1076
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	7 cut(s)	128, 143, 410, 675, 727, 923, 958
MlyI	GAGTC	5 cut(s)	177, 616, 809, 851, 1078
MroI	TCCGGA	1 cut(s)	708
MseI	TTAA	5 cut(s)	39, 71, 881, 905, 1032
MspCI	CTTAAG	1 cut(s)	1031
MspI	CCGG	1 cut(s)	709
MspR9I	CCNGG	3 cut(s)	423, 542, 588
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	2 cut(s)	103, 720
MvaI	CCWGG	3 cut(s)	423, 542, 588
MvnI	CGCG	2 cut(s)	793, 956
MwoI	GCNNNNNNNGC	1 cut(s)	1027
NdeII	GATC	4 cut(s)	16, 121, 229, 610
NlaIII	CATG	2 cut(s)	740, 838
NlaIV	GGNNCC	4 cut(s)	331, 386, 595, 779
NmeAIII	GCCGAG	1 cut(s)	994
NmuCI	GTSAC	2 cut(s)	812, 854
NspV	TTCGAA	2 cut(s)	92, 629
PagI	TCATGA	1 cut(s)	834
PceI	AGGCCT	1 cut(s)	1145
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	2 cut(s)	103, 720
PfeI	GAWTC	4 cut(s)	78, 215, 399, 1039
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	154, 179, 593, 955
PleI	GAGTC	5 cut(s)	177, 616, 809, 851, 1077
PpsI	GAGTC	5 cut(s)	177, 616, 809, 851, 1077
PshAI	GACNNNNGTC	1 cut(s)	204
Psp6I	CCWGG	3 cut(s)	421, 540, 586
PspGI	CCWGG	3 cut(s)	421, 540, 586
PspN4I	GGNNCC	4 cut(s)	331, 386, 595, 779
PspPI	GGNCC	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	16
SalI	GTCGAC	1 cut(s)	662
SaqAI	TTAA	5 cut(s)	39, 71, 881, 905, 1032
SatI	GCNGC	4 cut(s)	153, 178, 592, 954
Sau3AI	GATC	4 cut(s)	16, 121, 229, 610
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	5 cut(s)	177, 616, 809, 851, 1078
ScrFI	CCNGG	3 cut(s)	423, 542, 588
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	511
SfuI	TTCGAA	2 cut(s)	92, 629
SgrDI	CGTCGACG	1 cut(s)	662
SinI	GGWCC	1 cut(s)	538
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
Sse9I	AATT	7 cut(s)	128, 143, 410, 675, 727, 923, 958
SseBI	AGGCCT	1 cut(s)	1145
SsiI	CCGC	5 cut(s)	5, 178, 477, 591, 954
SspMI	CTAG	2 cut(s)	326, 1097
StuI	AGGCCT	1 cut(s)	1145
StyD4I	CCNGG	3 cut(s)	421, 540, 586
TaaI	ACNGT	2 cut(s)	806, 949
TaiI	ACGT	1 cut(s)	852
TaqI	TCGA	7 cut(s)	92, 213, 609, 629, 663, 732, 1128
TasI	AATT	7 cut(s)	128, 143, 410, 675, 727, 923, 958
TauI	GCSGC	3 cut(s)	180, 594, 956
TfiI	GAWTC	4 cut(s)	78, 215, 399, 1039
Tru1I	TTAA	5 cut(s)	39, 71, 881, 905, 1032
Tru9I	TTAA	5 cut(s)	39, 71, 881, 905, 1032
TseFI	GTSAC	2 cut(s)	812, 854
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	2 cut(s)	812, 854
TspDTI	ATGAA	4 cut(s)	632, 687, 851, 1077
TspGWI	ACGGA	3 cut(s)	76, 250, 649
Van91I	CCANNNNNTGG	1 cut(s)	395
Vha464I	CTTAAG	1 cut(s)	1031
VpaK11BI	GGWCC	1 cut(s)	538
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	2 cut(s)	128, 923
XbaI	TCTAGA	1 cut(s)	1096
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XmiI	GTMKAC	2 cut(s)	663, 1072
XspI	CTAG	2 cut(s)	326, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.