Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Reverse (-)

62798099 .. 62805065

Gene Structure 6967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0513300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCGTCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACACAATTCATTAAAGCAAGGGAGCAGCACCAGCAGCAACAACAACAACAACAACAGCAACAATCCCAGCAACCCCAACACTCACAACAACAGCAGCAGCAGCAACAGCAACAGCAACACATGCAAATGCAGCAGATTCTGATGCAAAGACATCAGCAGCAACAACAACAGCAACAACAGCAGCAACAGCAGCAACAACAACAGCAGCCACAGCAACAACAACAGCCACAGCAACAACAACAGCCACAACAGAGAAGAGATGGGGCCCATCTCTTAAATGGAAATACAAATGGGCTTGTTGGAAATGATCCTCGACAAAATCCTGGAACAGCAAATGCTATGGCTACAAAGATGTATGAGGAAAGATTAAAACTCCCTCAGAGAGATTCTTTGGATGATGCATCTCTAAAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGATATAAAGACAGAAATTAATCCTGTATTGAATCCAAGAGCTCCCGAGGGATCATTGATGGGAATTCCAGGGTCTAATCAGGGTGGTAACAATCTGACTTTGAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAATTGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCGAACTCTTTTCGAGGAAATGATCAGGTCTCAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCCCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGGCTGATATGGATCGATTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATGATGATGCAGACCCTAGAGATGCTGTTGGTCGAGGTATGGATGTCAGCAAAGGGTTCACATTTACGGAAGTAAACTCTGTTAAAGCAAGCCCAAGCAAAGTTACTAGTTGTCACTTCTCATCGGATGGAAAACTTCTTACTAGTGGCGGCCATGATAAAAAGGCTGTATTATGGTACACTGATACTCTGAAGTCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATTCCACGTCTTGCAACATCTTCATTCGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGTACATTCATGGGACATACTGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGACGACCTTATATGTTCTTGTGATGGGGATGGTGAGATACGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTGTTCAAGGGTGGGACGACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATGTTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTCGGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGGGGAATGTGTTCATGAATTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCATTGGTTGTTACCAGTCTTTGGAGCTATGGAACATGCAAGAGAACAAGACAATGACTCTATCAGCACATGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCGGCTAGTCATGATAAGTGGGTTAAGCTCTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

893

Amino Acids

98.03

Weight (kDa)

6.49

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	10 - 36	1.8e-06	LisH
WD40_Gbeta	PF25391	600 - 743	1.8e-10	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	602 - 665	1.6e-07	THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	602 - 806	1.8e-12	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	608 - 807	6.2e-17	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	611 - 743	1.5e-19	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	612 - 728	2.4e-20	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	612 - 732	1.7e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	612 - 744	7.5e-27	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	614 - 686	5.9e-09	WDHD1 first WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	615 - 686	2e-06	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	615 - 685	2.5e-06	EIF3I
Beta-prop_TEP1_2nd	PF25047	643 - 742	4.3e-07	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	644 - 806	1.6e-17	CDC20/Fizzy WD40 domain
WD40	PF00400	647 - 683	1.9e-07	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	654 - 893	6.5e-38	THOC3 beta-propeller domain
WD40	PF00400	689 - 727	2.8e-06	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	691 - 739	4.8e-07	WDHD1 first WD40 domain
WDR55	PF24796	698 - 863	4.2e-07	WDR55
WD40_Gbeta	PF25391	711 - 892	8.5e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	713 - 852	8e-15	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	719 - 812	9.5e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	740 - 892	1.1e-24	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	741 - 826	2.6e-10	WDHD1 first WD40 domain
WD40_Prp19	PF24814	742 - 892	2.1e-17	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	751 - 892	2.8e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	752 - 886	7.2e-08	WDR36/Utp21 first beta-propeller
WD40	PF00400	772 - 806	1.7e-07	WD domain, G-beta repeat
Beta-prop_EIPR1	PF23609	775 - 863	4e-06	EIPR1 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2033
AccB7I	CCANNNNNTGG	2 cut(s)	679, 2542
AciI	CCGC	1 cut(s)	1893
AcoI	YGGCCR	2 cut(s)	926, 1894
AcsI	RAATTY	4 cut(s)	879, 1063, 1156, 2477
AcuI	CTGAAG	6 cut(s)	123, 717, 950, 1286, 1467, 1955
AfaI	GTAC	5 cut(s)	754, 1648, 1654, 1922, 2077
AfiI	CCNNNNNNNGG	8 cut(s)	679, 935, 1184, 1604, 2128, 2249, 2398, 2542
AhlI	ACTAGT	2 cut(s)	1850, 1886
AjiI	CACGTC	1 cut(s)	2006
AjnI	CCWGG	6 cut(s)	562, 802, 883, 1450, 1567, 2059
AjuI	GAANNNNNNNTTGG	4 cut(s)	1238, 1270, 2494, 2526
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	4 cut(s)	9, 63, 233, 1441
AlwNI	CAGNNNCTG	6 cut(s)	379, 722, 799, 1490, 2043, 2273
Ama87I	CYCGRG	2 cut(s)	860, 1531
AoxI	GGCC	6 cut(s)	504, 670, 926, 1147, 1486, 1894
ApaI	GGGCCC	1 cut(s)	508
ApoI	RAATTY	4 cut(s)	879, 1063, 1156, 2477
AseI	ATTAAT	2 cut(s)	834, 2349
Asp700I	GAANNNNTTC	1 cut(s)	2448
AspS9I	GGNCC	6 cut(s)	198, 504, 505, 670, 1487, 1523
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	8 cut(s)	671, 1182, 1583, 1651, 1656, 2174, 2242, 2387
AsuNHI	GCTAGC	1 cut(s)	1400
AvaI	CYCGRG	2 cut(s)	860, 1531
AvaII	GGWCC	2 cut(s)	198, 1523
BaeGI	GKGCMC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	928
BamHI	GGATCC	1 cut(s)	2365
BanII	GRGCYC	2 cut(s)	508, 859
BauI	CACGAG	1 cut(s)	1221
BbsI	GAAGAC	1 cut(s)	1105
Bbv12I	GWGCWC	1 cut(s)	859
BciT130I	CCWGG	6 cut(s)	564, 804, 885, 1452, 1569, 2061
BclI	TGATCA	1 cut(s)	1429
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	4 cut(s)	9, 63, 233, 1441
BcuI	ACTAGT	2 cut(s)	1850, 1886
BfaI	CTAG	7 cut(s)	59, 195, 1401, 1761, 1851, 1887, 2649
BfmI	CTRYAG	4 cut(s)	714, 1203, 1265, 2265
BglI	GCCNNNNNGGC	1 cut(s)	736
BlpI	GCTNAGC	1 cut(s)	1323
Bme1390I	CCNGG	7 cut(s)	144, 564, 804, 885, 1452, 1569, 2061
Bme18I	GGWCC	2 cut(s)	198, 1523
BmeT110I	CYCGRG	2 cut(s)	860, 1531
BmgBI	CACGTC	1 cut(s)	2006
BmgT120I	GGNCC	6 cut(s)	198, 504, 505, 670, 1487, 1523
BmiI	GGNNCC	4 cut(s)	505, 506, 1612, 2367
BmrFI	CCNGG	7 cut(s)	144, 564, 804, 885, 1452, 1569, 2061
BmrI	ACTGGG	1 cut(s)	25
BmtI	GCTAGC	1 cut(s)	1404
BmuI	ACTGGG	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	1105
BpmI	CTGGAG	1 cut(s)	2197
Bpu1102I	GCTNAGC	1 cut(s)	1323
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	1693
BsaBI	GATNNNNATC	2 cut(s)	687, 1689
BsaI	GGTCTC	1 cut(s)	1441
BsaJI	CCNNGG	3 cut(s)	861, 884, 1451
BsaXI	ACNNNNNCTCC	2 cut(s)	1549, 1579
Bsc4I	CCNNNNNNNGG	8 cut(s)	679, 935, 1184, 1604, 2128, 2249, 2398, 2542
Bse118I	RCCGGY	1 cut(s)	758
Bse1I	ACTGG	8 cut(s)	20, 1083, 1472, 1654, 1683, 2180, 2298, 2536
Bse8I	GATNNNNATC	2 cut(s)	687, 1689
BseBI	CCWGG	6 cut(s)	564, 804, 885, 1452, 1569, 2061
BseCI	ATCGAT	1 cut(s)	1693
BseDI	CCNNGG	3 cut(s)	861, 884, 1451
BseJI	GATNNNNATC	2 cut(s)	687, 1689
BseLI	CCNNNNNNNGG	8 cut(s)	679, 935, 1184, 1604, 2128, 2249, 2398, 2542
BseMII	CTCAG	6 cut(s)	20, 632, 1337, 2240, 2265, 2384
BseNI	ACTGG	8 cut(s)	20, 1083, 1472, 1654, 1683, 2180, 2298, 2536
BseSI	GKGCMC	1 cut(s)	508
BseYI	CCCAGC	4 cut(s)	306, 996, 1056, 2361
BshFI	GGCC	6 cut(s)	506, 672, 928, 1149, 1488, 1896
BshVI	ATCGAT	1 cut(s)	1693
BsiHKAI	GWGCWC	1 cut(s)	859
BsiHKCI	CYCGRG	2 cut(s)	860, 1531
BsiSI	CCGG	3 cut(s)	143, 759, 815
BslFI	GGGAC	3 cut(s)	2100, 2233, 2346
BslI	CCNNNNNNNGG	8 cut(s)	679, 935, 1184, 1604, 2128, 2249, 2398, 2542
BsmAI	GTCTC	4 cut(s)	9, 63, 233, 1441
BsmFI	GGGAC	3 cut(s)	2100, 2233, 2346
BsmI	GAATGC	4 cut(s)	211, 1113, 1998, 2320
BsnI	GGCC	6 cut(s)	506, 672, 928, 1149, 1488, 1896
Bso31I	GGTCTC	1 cut(s)	1441
BsoBI	CYCGRG	2 cut(s)	860, 1531
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	2 cut(s)	508, 859
Bsp1720I	GCTNAGC	1 cut(s)	1323
BspACI	CCGC	1 cut(s)	1893
BspANI	GGCC	6 cut(s)	506, 672, 928, 1149, 1488, 1896
BspCNI	CTCAG	6 cut(s)	19, 631, 1336, 2239, 2266, 2385
BspDI	ATCGAT	1 cut(s)	1693
BspHI	TCATGA	3 cut(s)	1744, 2452, 2653
BspLI	GGNNCC	4 cut(s)	505, 506, 1612, 2367
BspMAI	CTGCAG	3 cut(s)	718, 1207, 2269
BspOI	GCTAGC	1 cut(s)	1404
BspTNI	GGTCTC	1 cut(s)	1441
BsrFI	RCCGGY	1 cut(s)	758
BsrI	ACTGG	8 cut(s)	20, 1083, 1472, 1654, 1683, 2180, 2298, 2536
BssAI	RCCGGY	1 cut(s)	758
BssECI	CCNNGG	3 cut(s)	861, 884, 1451
BssSI	CACGAG	1 cut(s)	1221
Bst2BI	CACGAG	1 cut(s)	1221
Bst2UI	CCWGG	6 cut(s)	564, 804, 885, 1452, 1569, 2061
Bst4CI	ACNGT	2 cut(s)	2035, 2626
Bst6I	CTCTTC	3 cut(s)	490, 1200, 1454
BstAPI	GCANNNNNTGC	2 cut(s)	361, 745
BstC8I	GCNNGC	8 cut(s)	674, 1053, 1207, 1311, 1381, 1402, 1590, 1834
BstDEI	CTNAG	8 cut(s)	6, 618, 1103, 1323, 1617, 2226, 2274, 2393
BstENI	CCTNNNNNAGG	1 cut(s)	2396
BstMAI	GTCTC	4 cut(s)	9, 63, 233, 1441
BstNI	CCWGG	6 cut(s)	564, 804, 885, 1452, 1569, 2061
BstNSI	RCATGY	4 cut(s)	364, 1313, 1408, 2560
BstSCI	CCNGG	7 cut(s)	142, 562, 802, 883, 1450, 1567, 2059
BstSFI	CTRYAG	4 cut(s)	714, 1203, 1265, 2265
BstSLI	GKGCMC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	1105
BstX2I	RGATCY	3 cut(s)	806, 1709, 2365
BstXI	CCANNNNNNTGG	2 cut(s)	1568, 1607
BstYI	RGATCY	3 cut(s)	806, 1709, 2365
Bsu15I	ATCGAT	1 cut(s)	1693
BsuRI	GGCC	6 cut(s)	506, 672, 928, 1149, 1488, 1896
BsuTUI	ATCGAT	1 cut(s)	1693
BtgZI	GCGATG	1 cut(s)	1182
BtrI	CACGTC	1 cut(s)	2006
BtsI	GCAGTG	1 cut(s)	2513
BtsIMutI	CAGTG	6 cut(s)	1090, 1479, 1676, 1923, 2106, 2513
Cac8I	GCNNGC	8 cut(s)	674, 1053, 1207, 1311, 1381, 1402, 1590, 1834
CaiI	CAGNNNCTG	6 cut(s)	379, 722, 799, 1490, 2043, 2273
CciI	TCATGA	3 cut(s)	1744, 2452, 2653
Cfr10I	RCCGGY	1 cut(s)	758
Cfr13I	GGNCC	6 cut(s)	198, 504, 505, 670, 1487, 1523
ClaI	ATCGAT	1 cut(s)	1693
Csp6I	GTAC	5 cut(s)	753, 1647, 1653, 1921, 2076
CviQI	GTAC	5 cut(s)	753, 1647, 1653, 1921, 2076
DdeI	CTNAG	8 cut(s)	6, 618, 1103, 1323, 1617, 2226, 2274, 2393
DrdI	GACNNNNNNGTC	1 cut(s)	2033
DseDI	GACNNNNNNGTC	1 cut(s)	2033
EaeI	YGGCCR	2 cut(s)	926, 1894
Eam1104I	CTCTTC	3 cut(s)	490, 1200, 1454
EarI	CTCTTC	3 cut(s)	490, 1200, 1454
Ecl136II	GAGCTC	1 cut(s)	857
Eco24I	GRGCYC	2 cut(s)	508, 859
Eco31I	GGTCTC	1 cut(s)	1441
Eco32I	GATATC	1 cut(s)	2258
Eco47I	GGWCC	2 cut(s)	198, 1523
Eco53kI	GAGCTC	1 cut(s)	857
Eco57I	CTGAAG	6 cut(s)	123, 717, 950, 1286, 1467, 1955
Eco88I	CYCGRG	2 cut(s)	860, 1531
EcoICRI	GAGCTC	1 cut(s)	857
EcoNI	CCTNNNNNAGG	1 cut(s)	2396
EcoO109I	RGGNCCY	2 cut(s)	504, 1487
EcoRI	GAATTC	1 cut(s)	879
EcoRII	CCWGG	6 cut(s)	562, 802, 883, 1450, 1567, 2059
EcoRV	GATATC	1 cut(s)	2258
EcoT22I	ATGCAT	1 cut(s)	643
EcoT38I	GRGCYC	2 cut(s)	508, 859
FaqI	GGGAC	3 cut(s)	2100, 2233, 2346
FbaI	TGATCA	1 cut(s)	1429
FriOI	GRGCYC	2 cut(s)	508, 859
FspBI	CTAG	7 cut(s)	59, 195, 1401, 1761, 1851, 1887, 2649
GsaI	CCCAGC	4 cut(s)	310, 1000, 1060, 2365
GsuI	CTGGAG	1 cut(s)	2197
HaeIII	GGCC	6 cut(s)	506, 672, 928, 1149, 1488, 1896
HapII	CCGG	3 cut(s)	143, 759, 815
HincII	GTYRAC	1 cut(s)	2622
HindII	GTYRAC	1 cut(s)	2622
HindIII	AAGCTT	1 cut(s)	90
HpaII	CCGG	3 cut(s)	143, 759, 815
HphI	GGTGA	8 cut(s)	671, 1182, 1583, 1651, 1656, 2174, 2242, 2387
Hpy166II	GTNNAC	4 cut(s)	1803, 1819, 1923, 2622
Hpy8I	GTNNAC	4 cut(s)	1803, 1819, 1923, 2622
HpyAV	CCTTC	9 cut(s)	98, 103, 741, 1536, 1554, 1563, 2379, 2432, 2588
HpyCH4III	ACNGT	2 cut(s)	2035, 2626
HpyCH4IV	ACGT	1 cut(s)	2005
HpyF3I	CTNAG	8 cut(s)	6, 618, 1103, 1323, 1617, 2226, 2274, 2393
HpySE526I	ACGT	1 cut(s)	2005
Ksp22I	TGATCA	1 cut(s)	1429
LmnI	GCTCC	4 cut(s)	262, 862, 997, 2545
MaeI	CTAG	7 cut(s)	59, 195, 1401, 1761, 1851, 1887, 2649
MaeII	ACGT	1 cut(s)	2005
MaeIII	GTNAC	6 cut(s)	902, 1846, 1856, 2304, 2531, 2626
MboII	GAAGA	9 cut(s)	507, 956, 1110, 1187, 1471, 1473, 1967, 2010, 2265
MflI	RGATCY	3 cut(s)	806, 1709, 2365
MhlI	GDGCHC	2 cut(s)	508, 859
MlsI	TGGCCA	1 cut(s)	928
MluCI	AATT	9 cut(s)	245, 831, 879, 1063, 1156, 1253, 2350, 2456, 2477
MluNI	TGGCCA	1 cut(s)	928
MlyI	GAGTC	7 cut(s)	763, 1739, 2049, 2218, 2312, 2396, 2572
MmeI	TCCRAC	3 cut(s)	520, 2263, 2525
Mox20I	TGGCCA	1 cut(s)	928
Mph1103I	ATGCAT	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	2448
MscI	TGGCCA	1 cut(s)	928
MslI	CAYNNNNRTG	5 cut(s)	365, 1391, 1605, 1749, 2487
Msp20I	TGGCCA	1 cut(s)	928
MspA1I	CMGCKG	5 cut(s)	713, 722, 1520, 2196, 2273
MspI	CCGG	3 cut(s)	143, 759, 815
MspR9I	CCNGG	7 cut(s)	144, 564, 804, 885, 1452, 1569, 2061
Mva1269I	GAATGC	4 cut(s)	211, 1113, 1998, 2320
MvaI	CCWGG	6 cut(s)	564, 804, 885, 1452, 1569, 2061
NciI	CCSGG	1 cut(s)	144
NheI	GCTAGC	1 cut(s)	1400
NlaIV	GGNNCC	4 cut(s)	505, 506, 1612, 2367
NmuCI	GTSAC	2 cut(s)	1856, 2304
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	4 cut(s)	364, 1313, 1408, 2560
PaeI	GCATGC	1 cut(s)	1313
PagI	TCATGA	3 cut(s)	1744, 2452, 2653
PctI	GAATGC	4 cut(s)	211, 1113, 1998, 2320
PdmI	GAANNNNTTC	1 cut(s)	2448
PfeI	GAWTC	4 cut(s)	376, 626, 847, 2235
PflFI	GACNNNGTC	1 cut(s)	2405
PflMI	CCANNNNNTGG	2 cut(s)	679, 2542
PfoI	TCCNGGA	1 cut(s)	562
PleI	GAGTC	7 cut(s)	763, 1738, 2048, 2218, 2311, 2396, 2572
PpsI	GAGTC	7 cut(s)	763, 1738, 2048, 2218, 2311, 2396, 2572
PshBI	ATTAAT	2 cut(s)	834, 2349
Psp124BI	GAGCTC	1 cut(s)	859
Psp6I	CCWGG	6 cut(s)	562, 802, 883, 1450, 1567, 2059
PspFI	CCCAGC	4 cut(s)	306, 996, 1056, 2361
PspGI	CCWGG	6 cut(s)	562, 802, 883, 1450, 1567, 2059
PspN4I	GGNNCC	4 cut(s)	505, 506, 1612, 2367
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	6 cut(s)	198, 504, 505, 670, 1487, 1523
PstI	CTGCAG	3 cut(s)	718, 1207, 2269
PstNI	CAGNNNCTG	6 cut(s)	379, 722, 799, 1490, 2043, 2273
PsuI	RGATCY	3 cut(s)	806, 1709, 2365
PsyI	GACNNNGTC	1 cut(s)	2405
PvuII	CAGCTG	5 cut(s)	713, 722, 1520, 2196, 2273
RsaI	GTAC	5 cut(s)	754, 1648, 1654, 1922, 2077
RsaNI	GTAC	5 cut(s)	753, 1647, 1653, 1921, 2076
RseI	CAYNNNNRTG	5 cut(s)	365, 1391, 1605, 1749, 2487
SacI	GAGCTC	1 cut(s)	859
Sau96I	GGNCC	6 cut(s)	198, 504, 505, 670, 1487, 1523
SchI	GAGTC	7 cut(s)	763, 1739, 2049, 2218, 2312, 2396, 2572
ScrFI	CCNGG	7 cut(s)	144, 564, 804, 885, 1452, 1569, 2061
SduI	GDGCHC	2 cut(s)	508, 859
SfcI	CTRYAG	4 cut(s)	714, 1203, 1265, 2265
SinI	GGWCC	2 cut(s)	198, 1523
SmiMI	CAYNNNNRTG	5 cut(s)	365, 1391, 1605, 1749, 2487
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SpeI	ACTAGT	2 cut(s)	1850, 1886
SphI	GCATGC	1 cut(s)	1313
Sse9I	AATT	9 cut(s)	245, 831, 879, 1063, 1156, 1253, 2350, 2456, 2477
SsiI	CCGC	1 cut(s)	1893
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	7 cut(s)	59, 195, 1401, 1761, 1851, 1887, 2649
SstI	GAGCTC	1 cut(s)	859
StyD4I	CCNGG	7 cut(s)	142, 562, 802, 883, 1450, 1567, 2059
TaaI	ACNGT	2 cut(s)	2035, 2626
TaiI	ACGT	1 cut(s)	2008
TaqI	TCGA	9 cut(s)	237, 553, 787, 1123, 1409, 1420, 1693, 1777, 2025
TaqII	GACCGA	1 cut(s)	2395
TasI	AATT	9 cut(s)	245, 831, 879, 1063, 1156, 1253, 2350, 2456, 2477
TauI	GCSGC	1 cut(s)	1896
TfiI	GAWTC	4 cut(s)	376, 626, 847, 2235
TscAI	CASTG	6 cut(s)	1090, 1479, 1683, 1930, 2106, 2520
TseFI	GTSAC	2 cut(s)	1856, 2304
Tsp45I	GTSAC	2 cut(s)	1856, 2304
TspGWI	ACGGA	2 cut(s)	1150, 1826
TspRI	CASTG	6 cut(s)	1090, 1479, 1683, 1930, 2106, 2520
Tth111I	GACNNNGTC	1 cut(s)	2405
Van91I	CCANNNNNTGG	2 cut(s)	679, 2542
VpaK11BI	GGWCC	2 cut(s)	198, 1523
VspI	ATTAAT	2 cut(s)	834, 2349
XagI	CCTNNNNNAGG	1 cut(s)	2396
XapI	RAATTY	4 cut(s)	879, 1063, 1156, 2477
XceI	RCATGY	4 cut(s)	364, 1313, 1408, 2560
XcmI	CCANNNNNNNNNTGG	2 cut(s)	515, 2246
XmnI	GAANNNNTTC	1 cut(s)	2448
XspI	CTAG	7 cut(s)	59, 195, 1401, 1761, 1851, 1887, 2649
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.