Rw7G010530

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001697
Physical Location & Seq
Forward (+)
9786092 .. 9792739
6648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010530.1

Sequence Viewer

Length: 1191 bp
ATGCTCAACGTACTGAAGAGGTTGCCTCCTGGTCCTAGAAGGTTACCTCTCATTGGGAACCTTCATCTTCTCTTTAATGATTTACCCCAATCTGTCCTTGAACACGTTACCAATAAATATGGACCATTCATGTTCTTGCAATTAGGCTCAAAATATACTTTAGTAGTATCCTCAGCCCAAACGGCAAGAGTTATGGCAAGAGAGGTTTTCAAAACTCATGACCTAATTTTTTCAGGTAGACCAAGCTTGTATGGTGGAAATAAGCTCACCTATGACTCTGTCAGCTTATCTTTTTCTCCTTATGGTGAGTACTGGAGATTCATTCTTTTCTACTCCTACTTGGTCCCAAGAGAGTTCCAAGTGTTTCGTTCTGTGAGGGATGAAGAGGTTGCAGTTATGATCGACTTTATAACCCGCAATTCTAAGGGTCTCATCAATCTCAATTATTCACCATGGATGGGTTGGCTAAACAAGTTGAGTGATCTTGAACAAAGGGCAGACAAGTTTCAAAAAGATCCAAATCAAGCAATTGCCCTCACTAATGACCAAATGAAGGGTGTTATTACTGATATGTTTATTGGAGGAACTGATACAACCACATCGACACTGGTGTGGACAATGGCTGAGCTGATTAGGAACCCTGTGGCGTTGACGAAAGCACAAAATGAGGTGAGAGAACTCATCAAGAACAAAGGGAAGGTTGAAGAAATCATCAAGGAAGGTCTTCGATTACATCCGCCATTGCCATTACAAATTTCAAGACAAACCACAGAGAATTGCACAATTGAAGAGTACCACATTCCTGCCAACACAATGGTGTTTGTTCATGCAAAAATGATTGGAAGGGACCCGAAATGTTGGGAGAATCCAAATGAATTCTTCCCTGACAGATTCTCGAACAGCTCAGTTGATTACAATGGAAATCACTATGAGTTTTTACCATTTGGGGTAGGAAGGAGGGGTTGTCCTAGTATGAACTTTGCTGTGCAGGTTATTGAGCTTGCACTTGCTAATCTTCTCTATTGTTTTGACTGGGAACTGCCTCATGGGGTGAAAAGAGAAGACTTGGACATGAAAGAAGCTGTTGGGCTTACAGTGCAAAAGAAAGTTCATTTATGTCTAGCTGCTACCCCTGAAAATTTAGTTAGAACCATACAAATTCTTGTATGGATCATGTTAAAGCTTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

396

Amino Acids

45.42

Weight (kDa)

8.45

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 140 5.9e-09 Cytochrome P450
p450 PF00067 167 - 371 3.8e-54 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 979
AccI GTMKAC 1 cut(s) 238
AciI CCGC 2 cut(s) 415, 737
AclWI GGATC 2 cut(s) 509, 1178
AcsI RAATTY 4 cut(s) 753, 875, 1138, 1158
AcuI CTGAAG 1 cut(s) 35
AfaI GTAC 3 cut(s) 12, 311, 794
AfiI CCNNNNNNNGG 3 cut(s) 53, 458, 553
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 7 cut(s) 101, 211, 488, 509, 704, 759, 788
AjnI CCWGG 1 cut(s) 28
AleI CACNNNNGTG 2 cut(s) 610, 815
AluBI AGCT 9 cut(s) 246, 265, 285, 628, 903, 1000, 1082, 1124, 1183
AluI AGCT 9 cut(s) 246, 265, 285, 628, 903, 1000, 1082, 1124, 1183
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 2 cut(s) 509, 1178
ApeKI GCWGC 1 cut(s) 1124
ApoI RAATTY 4 cut(s) 753, 875, 1138, 1158
Asp700I GAANNNNTTC 1 cut(s) 723
AspS9I GGNCC 4 cut(s) 32, 122, 343, 847
AsuHPI GGTGA 5 cut(s) 259, 317, 441, 682, 1063
AvaII GGWCC 4 cut(s) 32, 122, 343, 847
BbsI GAAGAC 2 cut(s) 716, 1068
BbvCI CCTCAGC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 1111
BccI CCATC 1 cut(s) 451
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 3 cut(s) 36, 969, 1121
BfuAI ACCTGC 1 cut(s) 979
BfuI GTATCC 1 cut(s) 178
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 1 cut(s) 1125
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 1126
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 4 cut(s) 32, 122, 343, 847
BmgT120I GGNCC 4 cut(s) 32, 122, 343, 847
BmiI GGNNCC 5 cut(s) 59, 345, 638, 848, 849
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 1042
BmuI ACTGGG 1 cut(s) 1042
BpiI GAAGAC 2 cut(s) 716, 1068
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 1188
BsaBI GATNNNNATC 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 949, 979
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 458, 553
Bse1I ACTGG 3 cut(s) 317, 612, 1037
Bse3DI GCAATG 1 cut(s) 740
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 3 cut(s) 385, 462, 733
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 3 cut(s) 53, 458, 553
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 3 cut(s) 186, 615, 918
BseNI ACTGG 3 cut(s) 317, 612, 1037
BseXI GCAGC 1 cut(s) 1111
BsgI GTGCAG 1 cut(s) 1007
BslFI GGGAC 2 cut(s) 329, 860
BslI CCNNNNNNNGG 3 cut(s) 53, 458, 553
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 2 cut(s) 329, 860
Bso31I GGTCTC 1 cut(s) 434
Bsp143I GATC 4 cut(s) 399, 481, 514, 1170
Bsp1720I GCTNAGC 1 cut(s) 624
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 2 cut(s) 415, 737
BspCNI CTCAG 3 cut(s) 185, 616, 917
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 5 cut(s) 59, 345, 638, 848, 849
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 2 cut(s) 509, 1178
BspTNI GGTCTC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 740
BsrI ACTGG 3 cut(s) 317, 612, 1037
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 4 cut(s) 399, 481, 514, 1170
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 1096
Bst6I CTCTTC 3 cut(s) 11, 378, 783
BstBAI YACGTR 1 cut(s) 1188
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 4 cut(s) 172, 423, 624, 904
BstDSI CCRYGG 1 cut(s) 452
BstEII GGTNACC 1 cut(s) 42
BstF5I GGATG 3 cut(s) 385, 462, 733
BstKTI GATC 4 cut(s) 402, 484, 517, 1173
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 4 cut(s) 399, 481, 514, 1170
BstMWI GCNNNNNNNGC 2 cut(s) 182, 1096
BstNI CCWGG 1 cut(s) 30
BstPI GGTNACC 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 1111
BstV2I GAAGAC 2 cut(s) 716, 1068
BstX2I RGATCY 1 cut(s) 514
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 1 cut(s) 514
BsuI GTATCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 3 cut(s) 385, 462, 733
BtsIMutI CAGTG 2 cut(s) 605, 1101
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 1 cut(s) 1002
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 4 cut(s) 32, 122, 343, 847
Csp6I GTAC 3 cut(s) 11, 310, 793
CviAII CATG 7 cut(s) 130, 218, 453, 827, 1046, 1072, 1174
CviQI GTAC 3 cut(s) 11, 310, 793
DdeI CTNAG 4 cut(s) 172, 423, 624, 904
DpnI GATC 4 cut(s) 401, 483, 516, 1172
DpnII GATC 4 cut(s) 399, 481, 514, 1170
Eam1104I CTCTTC 3 cut(s) 11, 378, 783
EarI CTCTTC 3 cut(s) 11, 378, 783
EciI GGCGGA 1 cut(s) 726
Eco130I CCWWGG 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 4 cut(s) 32, 122, 343, 847
Eco57I CTGAAG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 847
EcoO65I GGTNACC 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 7 cut(s) 133, 221, 456, 830, 1049, 1075, 1177
FaqI GGGAC 2 cut(s) 329, 860
FatI CATG 7 cut(s) 129, 217, 452, 826, 1045, 1071, 1173
FauI CCCGC 1 cut(s) 422
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 1125
FokI GGATG 3 cut(s) 392, 469, 720
Fsp4HI GCNGC 1 cut(s) 1125
FspBI CTAG 3 cut(s) 36, 969, 1121
GluI GCNGC 1 cut(s) 1125
GsuI CTGGAG 1 cut(s) 334
Hin1II CATG 7 cut(s) 133, 221, 456, 830, 1049, 1075, 1177
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 2 cut(s) 244, 1181
HinfI GANTC 4 cut(s) 275, 318, 865, 891
HphI GGTGA 5 cut(s) 259, 317, 441, 682, 1063
Hpy166II GTNNAC 3 cut(s) 239, 615, 651
Hpy188III TCNNGA 5 cut(s) 218, 485, 685, 759, 895
Hpy8I GTNNAC 3 cut(s) 239, 615, 651
HpyAV CCTTC 7 cut(s) 33, 71, 547, 691, 713, 837, 948
HpyCH4III ACNGT 1 cut(s) 1096
HpyCH4IV ACGT 3 cut(s) 9, 105, 1187
HpyCH4V TGCA 7 cut(s) 139, 392, 780, 830, 988, 1004, 1099
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 1096
HpyF3I CTNAG 4 cut(s) 172, 423, 624, 904
HpySE526I ACGT 3 cut(s) 9, 105, 1187
Hsp92II CATG 7 cut(s) 133, 221, 456, 830, 1049, 1075, 1177
KflI GGGWCCC 1 cut(s) 847
Kzo9I GATC 4 cut(s) 399, 481, 514, 1170
Lsp1109I GCAGC 1 cut(s) 1111
MaeI CTAG 3 cut(s) 36, 969, 1121
MaeII ACGT 3 cut(s) 9, 105, 1187
MaeIII GTNAC 2 cut(s) 42, 106
MalI GATC 4 cut(s) 401, 483, 516, 1172
MboI GATC 4 cut(s) 399, 481, 514, 1170
MboII GAAGA 9 cut(s) 28, 59, 395, 716, 716, 800, 871, 1007, 1073
MfeI CAATTG 2 cut(s) 528, 783
MflI RGATCY 1 cut(s) 514
MlyI GAGTC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 2 cut(s) 75, 1178
MslI CAYNNNNRTG 2 cut(s) 610, 815
MspR9I CCNGG 1 cut(s) 30
MunI CAATTG 2 cut(s) 528, 783
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 182, 1096
NcoI CCATGG 1 cut(s) 452
NdeII GATC 4 cut(s) 399, 481, 514, 1170
NlaIII CATG 7 cut(s) 133, 221, 456, 830, 1049, 1075, 1177
NlaIV GGNNCC 5 cut(s) 59, 345, 638, 848, 849
OliI CACNNNNGTG 2 cut(s) 610, 815
PagI TCATGA 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 3 cut(s) 318, 865, 891
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 1126
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 1188
PpuMI RGGWCCY 1 cut(s) 847
PsiI TTATAA 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 847
Psp6I CCWGG 1 cut(s) 28
PspEI GGTNACC 1 cut(s) 42
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 5 cut(s) 59, 345, 638, 848, 849
PspPI GGNCC 4 cut(s) 32, 122, 343, 847
PspPPI RGGWCCY 1 cut(s) 847
PsuI RGATCY 1 cut(s) 514
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 3 cut(s) 12, 311, 794
RsaNI GTAC 3 cut(s) 11, 310, 793
RseI CAYNNNNRTG 2 cut(s) 610, 815
SaqAI TTAA 2 cut(s) 75, 1178
SatI GCNGC 1 cut(s) 1125
Sau3AI GATC 4 cut(s) 399, 481, 514, 1170
Sau96I GGNCC 4 cut(s) 32, 122, 343, 847
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 30
SinI GGWCC 4 cut(s) 32, 122, 343, 847
SmiMI CAYNNNNRTG 2 cut(s) 610, 815
SsiI CCGC 2 cut(s) 415, 737
SspMI CTAG 3 cut(s) 36, 969, 1121
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 1096
TaiI ACGT 3 cut(s) 12, 108, 1190
TaqI TCGA 4 cut(s) 402, 602, 727, 896
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 3 cut(s) 318, 865, 891
Tru1I TTAA 2 cut(s) 75, 1178
Tru9I TTAA 2 cut(s) 75, 1178
TscAI CASTG 2 cut(s) 612, 1101
TseI GCWGC 1 cut(s) 1124
TspRI CASTG 2 cut(s) 612, 1101
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 4 cut(s) 32, 122, 343, 847
XapI RAATTY 4 cut(s) 753, 875, 1138, 1158
XcmI CCANNNNNNNNNTGG 2 cut(s) 459, 604
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 3 cut(s) 36, 969, 1121
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.