Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Reverse (-)

85931224 .. 85931559

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGACCTATTTTTTTTCAGGCAGACCAGCCTTGTATGTTGCAAAGAAGATTGGCTATGGATGTGTCAATCTATCGTTTGCTCCTTATGGTGAGTATTGGAGGGAGGTAAGGAAGTTTGTGATCTTGGAACTACTTGGTCCAAAGAGGGTCCAAATGTTTCAATTTGTGAGAGATGAAGAGGTTGGAGTTATGATCGACTCAATAGCTCATAAGTGTTATGGTATTGTCAATCTCAGTGAAGTGACAGTTATCTTGGCCAACAATGTTTTGTGTCGCTGCGCTTTTGGTAACAAGTATGATGGGGAAGGTGAAATTGGCATGGGCAGAAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

111

Amino Acids

12.58

Weight (kDa)

8.37

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	5 - 100	9.1e-06	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	137, 148
AsuHPI	GGTGA	2 cut(s)	101, 320
AvaII	GGWCC	2 cut(s)	137, 148
BalI	TGGCCA	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme18I	GGWCC	2 cut(s)	137, 148
BmgT120I	GGNCC	2 cut(s)	137, 148
BmiI	GGNNCC	1 cut(s)	149
BseGI	GGATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	120, 192
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	149
BssMI	GATC	2 cut(s)	120, 192
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	2 cut(s)	123, 195
BstMBI	GATC	2 cut(s)	120, 192
BstV1I	GCAGC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	137, 148
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	4 cut(s)	29, 54, 206, 257
CviKI_1	RGCY	4 cut(s)	29, 54, 206, 257
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	2 cut(s)	122, 194
DpnII	GATC	2 cut(s)	120, 192
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	137, 148
FaeI	CATG	1 cut(s)	322
FaiI	YATR	8 cut(s)	36, 57, 87, 191, 210, 219, 297, 320
FatI	CATG	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	277
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HinfI	GANTC	1 cut(s)	197
HphI	GGTGA	2 cut(s)	101, 320
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	120, 192
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	3, 39
Lsp1109I	GCAGC	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	241, 287
MalI	GATC	2 cut(s)	122, 194
MboI	GATC	2 cut(s)	120, 192
MboII	GAAGA	2 cut(s)	58, 188
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	161, 312
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	93, 97, 138, 172
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
NdeII	GATC	2 cut(s)	120, 192
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	2 cut(s)	137, 148
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	120, 192
Sau96I	GGNCC	2 cut(s)	137, 148
SchI	GAGTC	1 cut(s)	191
SetI	ASST	5 cut(s)	8, 108, 183, 208, 310
SgeI	CNNG	8 cut(s)	30, 38, 43, 136, 146, 265, 304, 331
SinI	GGWCC	2 cut(s)	137, 148
Sse9I	AATT	2 cut(s)	161, 312
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	161, 312
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	137, 148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.