RchiOBHm_Chr7g0192101

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001697
Physical Location & Seq
Forward (+)
10683798 .. 10684295
498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17167

Sequence Viewer

Length: 498 bp
ATGTACCTAAAGTCAGTCATCAAGGAAGGTCTTCGATTACATCCGCCATTGCCATTACAAATTTCAAGACAAACCACAGAGAATTGCACAATTGAAGAGTACCACATTCCTGCCAACACAATGGTGTTTGTTCATGCAAAAATGATTGGAAGGGACCCGAAATGTTGGGAGAATCCAAATGAATTCTTCCCTGACAGATTCTCGAACAGCTCAGTTGATTACAATGGAAATCACTATGAGTTTTTACCATTTGGGGTAGGAAGGAGGGGTTGTCCTGGTATGAACTTTGCTGTGCAGGTTATTGAGCTTGCACTTGCTAATCTTCTCTATTGTTTTGACTGGGAACTGCCTCATGGGGTGAAAAGAGAAGACTTGGACATGAAAGAAGCTGTTGGGCTTACAGTGCAAAAGAAAGTTCATTTATGTCTAGCTGCTACCCCTGAAAATTTAGTTAGAACCATACAAATTCTTGTATGGATCATGTTAAAGCTTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

165

Amino Acids

18.97

Weight (kDa)

6.58

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 140 1.1e-44 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 4 cut(s) 60, 182, 445, 465
AfaI GTAC 2 cut(s) 5, 101
AgsI TTSAA 2 cut(s) 66, 95
AjnI CCWGG 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 5 cut(s) 210, 307, 389, 431, 490
AluI AGCT 5 cut(s) 210, 307, 389, 431, 490
AlwI GGATC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 4 cut(s) 60, 182, 445, 465
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 1 cut(s) 154
BbsI GAAGAC 2 cut(s) 23, 375
BbvI GCAGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 276
BfaI CTAG 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 155, 156
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 23, 375
BsaAI YACGTR 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 477
BspACI CCGC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 155, 156
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 47
BsrI ACTGG 1 cut(s) 344
BssMI GATC 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 1 cut(s) 480
BstMBI GATC 1 cut(s) 477
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 2 cut(s) 23, 375
BstXI CCANNNNNNTGG 1 cut(s) 121
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 408
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 4, 100
CviAII CATG 4 cut(s) 134, 353, 379, 481
CviJI RGCY 6 cut(s) 210, 307, 389, 397, 431, 490
CviKI_1 RGCY 6 cut(s) 210, 307, 389, 397, 431, 490
CviQI GTAC 2 cut(s) 4, 100
DdeI CTNAG 1 cut(s) 211
DpnI GATC 1 cut(s) 479
DpnII GATC 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 4 cut(s) 137, 356, 382, 484
FaiI YATR 9 cut(s) 135, 237, 281, 354, 380, 424, 461, 475, 482
FaqI GGGAC 1 cut(s) 167
FatI CATG 4 cut(s) 133, 352, 378, 480
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 1 cut(s) 428
GluI GCNGC 1 cut(s) 432
Hin1II CATG 4 cut(s) 137, 356, 382, 484
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 172, 198
HphI GGTGA 1 cut(s) 370
Hpy188III TCNNGA 2 cut(s) 66, 202
HpyAV CCTTC 3 cut(s) 20, 144, 255
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 5 cut(s) 87, 137, 295, 311, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 4 cut(s) 137, 356, 382, 484
KflI GGGWCCC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 477
LpnPI CCDG 7 cut(s) 123, 204, 261, 281, 288, 325, 453
Lsp1109I GCAGC 1 cut(s) 418
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 494
MalI GATC 1 cut(s) 479
MboI GATC 1 cut(s) 477
MboII GAAGA 5 cut(s) 23, 107, 178, 314, 380
MfeI CAATTG 1 cut(s) 90
MluCI AATT 6 cut(s) 60, 82, 90, 182, 445, 465
MnlI CCTC 2 cut(s) 258, 360
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 1 cut(s) 485
MslI CAYNNNNRTG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 403
NdeII GATC 1 cut(s) 477
NlaIII CATG 4 cut(s) 137, 356, 382, 484
NlaIV GGNNCC 2 cut(s) 155, 156
OliI CACNNNNGTG 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 172, 198
PkrI GCNGC 1 cut(s) 433
Ppu21I YACGTR 1 cut(s) 495
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 155, 156
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
RsaI GTAC 2 cut(s) 5, 101
RsaNI GTAC 2 cut(s) 4, 100
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 1 cut(s) 477
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 276
SetI ASST 9 cut(s) 9, 31, 212, 300, 309, 391, 433, 492, 497
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 6 cut(s) 60, 82, 90, 182, 445, 465
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 1 cut(s) 497
TaqI TCGA 2 cut(s) 34, 203
TasI AATT 6 cut(s) 60, 82, 90, 182, 445, 465
TfiI GAWTC 2 cut(s) 172, 198
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TscAI CASTG 1 cut(s) 408
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 5 cut(s) 122, 195, 296, 395, 407
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 4 cut(s) 60, 182, 445, 465
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.