Rmu_sc0002164.1_g000024

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002164.1
OG0001697
Physical Location & Seq
Forward (+)
95959 .. 97598
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002164.1_g000024.1.cds

Sequence Viewer

Length: 1014 bp
atgaagcgaaggaagcaaaatgttcaagcaaagagattgcctcctggtcctagaaggctacctgtaattgggaaccttcaccatctttctgatgatttacctcattgtgcctttgaacacctttccagtagaccagatttcttgtatgttgcaaagaggcttagctatgactccagtgtatcattttctcccatcggtaagtattggagggaggttagaaagattgtgatcttggaactacttagtgcaaagcggattcaaatgtttcgttctgtgagagacgaagaggttggacatatgattgatgacatagctcatacttctactggtctcatcaatctcaatgaactgacacatttcttatccaacagtgtcttgtgccgctcggcttttggcaaaaagtatgatggtgctggagggactgacacatcctcagccacagtggtttggacaatggctgagctgatcaggaatcccttagtgatgaggaaagcgcaagatgaggtgagaggagtggtcaaggcacaagggaaggtggaagaaagtgatctttctgaactcatgtacctaaagttagttatcaaagaaagttttagactacatccgccagtgccatcactagttccaagagtaactaccgagagttgcacaattgaagggtacgaaattcctgccaaaacaatggtgtttattcttgcaaaaatgattggaagggacccaaaatgttgggagaatccaaatgaattcttccctgaaagattcttggacagctcgattgactacaagggaaaccattttgagcttttgccatttggggcaggaaggaggggttgtcctggtatgaactttgctatgcagctagttgagcttacactagctaatctgctgtatcgttttgactgggaattgcctaatgggatgaaaagagaagacttgaacatggaagaagctgctgggattacagtgcagaagaaagttcctttatatctagcagctacaccagtacatctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

337

Amino Acids

38.27

Weight (kDa)

8.84

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 130
AciI CCGC 3 cut(s) 253, 382, 605
AcsI RAATTY 2 cut(s) 666, 743
AfaI GTAC 3 cut(s) 566, 662, 1005
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 5 cut(s) 26, 116, 260, 656, 937
AhlI ACTAGT 1 cut(s) 619
AjnI CCWGG 2 cut(s) 43, 835
Alw26I GTCTC 2 cut(s) 273, 335
ApeKI GCWGC 3 cut(s) 856, 950, 992
ApoI RAATTY 2 cut(s) 666, 743
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 47, 715
AsuHPI GGTGA 2 cut(s) 71, 517
AvaII GGWCC 2 cut(s) 47, 715
BaeI ACNNNNGTAYC 2 cut(s) 548, 581
BbsI GAAGAC 1 cut(s) 936
BbvCI CCTCAGC 1 cut(s) 433
BbvI GCAGC 3 cut(s) 868, 937, 1004
BccI CCATC 4 cut(s) 90, 200, 401, 622
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 2 cut(s) 45, 837
BclI TGATCA 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 273, 335
BcuI ACTAGT 1 cut(s) 619
BfaI CTAG 5 cut(s) 51, 620, 860, 875, 989
BisI GCNGC 4 cut(s) 382, 857, 951, 993
BlpI GCTNAGC 2 cut(s) 161, 459
BlsI GCNGC 4 cut(s) 383, 858, 952, 994
Bme1390I CCNGG 2 cut(s) 45, 837
Bme18I GGWCC 2 cut(s) 47, 715
BmgT120I GGNCC 2 cut(s) 47, 715
BmiI GGNNCC 3 cut(s) 74, 716, 717
BmrFI CCNGG 2 cut(s) 45, 837
BmrI ACTGGG 1 cut(s) 910
BmuI ACTGGG 1 cut(s) 910
BpiI GAAGAC 1 cut(s) 936
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpmI CTGGAG 2 cut(s) 157, 435
Bpu10I CCTNAGC 1 cut(s) 433
Bpu1102I GCTNAGC 2 cut(s) 161, 459
BsaBI GATNNNNATC 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 817, 847
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 6 cut(s) 126, 174, 331, 608, 905, 1001
Bse8I GATNNNNATC 1 cut(s) 227
BseBI CCWGG 2 cut(s) 45, 837
BseGI GGATG 3 cut(s) 428, 601, 924
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 447, 450
BseNI ACTGG 6 cut(s) 126, 174, 331, 608, 905, 1001
BseRI GAGGAG 1 cut(s) 525
BseXI GCAGC 3 cut(s) 868, 937, 1004
BseYI CCCAGC 1 cut(s) 953
BsgI GTGCAG 1 cut(s) 986
BslFI GGGAC 2 cut(s) 433, 728
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 273, 335
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 2 cut(s) 433, 728
Bso31I GGTCTC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 228, 465, 547
Bsp1720I GCTNAGC 2 cut(s) 161, 459
BspACI CCGC 3 cut(s) 253, 382, 605
BspCNI CTCAG 2 cut(s) 446, 451
BspLI GGNNCC 3 cut(s) 74, 716, 717
BspTNI GGTCTC 1 cut(s) 335
BsrBI CCGCTC 1 cut(s) 384
BsrI ACTGG 6 cut(s) 126, 174, 331, 608, 905, 1001
BssMI GATC 3 cut(s) 228, 465, 547
Bst2UI CCWGG 2 cut(s) 45, 837
Bst4CI ACNGT 3 cut(s) 371, 442, 964
Bst6I CTCTTC 1 cut(s) 279
BstDEI CTNAG 5 cut(s) 161, 242, 433, 459, 478
BstF5I GGATG 3 cut(s) 428, 601, 924
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 3 cut(s) 231, 468, 550
BstMAI GTCTC 2 cut(s) 273, 335
BstMBI GATC 3 cut(s) 228, 465, 547
BstMWI GCNNNNNNNGC 2 cut(s) 13, 865
BstNI CCWGG 2 cut(s) 45, 837
BstSCI CCNGG 2 cut(s) 43, 835
BstV1I GCAGC 3 cut(s) 868, 937, 1004
BstV2I GAAGAC 1 cut(s) 936
BstXI CCANNNNNNTGG 2 cut(s) 682, 726
BtsCI GGATG 3 cut(s) 428, 601, 924
BtsIMutI CAGTG 5 cut(s) 181, 376, 447, 615, 969
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 47, 715
Csp6I GTAC 3 cut(s) 565, 661, 1004
CviAII CATG 2 cut(s) 562, 940
CviQI GTAC 3 cut(s) 565, 661, 1004
DdeI CTNAG 5 cut(s) 161, 242, 433, 459, 478
DpnI GATC 3 cut(s) 230, 467, 549
DpnII GATC 3 cut(s) 228, 465, 547
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 47, 715
EcoO109I RGGNCCY 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 743
EcoRII CCWGG 2 cut(s) 43, 835
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 2 cut(s) 565, 943
FaqI GGGAC 2 cut(s) 433, 728
FatI CATG 2 cut(s) 561, 939
FauNDI CATATG 1 cut(s) 297
FbaI TGATCA 1 cut(s) 465
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 382, 857, 951, 993
FokI GGATG 3 cut(s) 415, 588, 931
Fsp4HI GCNGC 4 cut(s) 382, 857, 951, 993
FspBI CTAG 5 cut(s) 51, 620, 860, 875, 989
GlaI GCGC 1 cut(s) 495
GluI GCNGC 4 cut(s) 382, 857, 951, 993
GsaI CCCAGC 1 cut(s) 957
GsuI CTGGAG 2 cut(s) 157, 435
HhaI GCGC 1 cut(s) 496
Hin1II CATG 2 cut(s) 565, 943
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HinfI GANTC 5 cut(s) 170, 256, 472, 733, 759
HphI GGTGA 2 cut(s) 71, 517
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 91, 556
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 7 cut(s) 3, 48, 86, 526, 650, 705, 816
HpyCH4III ACNGT 3 cut(s) 371, 442, 964
HpyCH4V TGCA 6 cut(s) 152, 248, 648, 698, 856, 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 865
HpyF3I CTNAG 5 cut(s) 161, 242, 433, 459, 478
Hsp92II CATG 2 cut(s) 565, 943
HspAI GCGC 1 cut(s) 494
KflI GGGWCCC 1 cut(s) 715
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 228, 465, 547
Lsp1109I GCAGC 3 cut(s) 868, 937, 1004
MaeI CTAG 5 cut(s) 51, 620, 860, 875, 989
MaeIII GTNAC 1 cut(s) 631
MalI GATC 3 cut(s) 230, 467, 549
MbiI CCGCTC 1 cut(s) 384
MboI GATC 3 cut(s) 228, 465, 547
MboII GAAGA 6 cut(s) 296, 551, 739, 941, 956, 982
MfeI CAATTG 1 cut(s) 651
MluCI AATT 5 cut(s) 66, 651, 666, 743, 905
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 271, 390
MspR9I CCNGG 2 cut(s) 45, 837
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 2 cut(s) 45, 837
MwoI GCNNNNNNNGC 2 cut(s) 13, 865
NdeI CATATG 1 cut(s) 297
NdeII GATC 3 cut(s) 228, 465, 547
NlaIII CATG 2 cut(s) 565, 943
NlaIV GGNNCC 3 cut(s) 74, 716, 717
NmeAIII GCCGAG 1 cut(s) 365
PfeI GAWTC 4 cut(s) 256, 472, 733, 759
PkrI GCNGC 4 cut(s) 383, 858, 952, 994
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 1 cut(s) 715
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 2 cut(s) 43, 835
PspFI CCCAGC 1 cut(s) 953
PspGI CCWGG 2 cut(s) 43, 835
PspN4I GGNNCC 3 cut(s) 74, 716, 717
PspPI GGNCC 2 cut(s) 47, 715
PspPPI RGGWCCY 1 cut(s) 715
RsaI GTAC 3 cut(s) 566, 662, 1005
RsaNI GTAC 3 cut(s) 565, 661, 1004
SatI GCNGC 4 cut(s) 382, 857, 951, 993
Sau3AI GATC 3 cut(s) 228, 465, 547
Sau96I GGNCC 2 cut(s) 47, 715
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 45, 837
SinI GGWCC 2 cut(s) 47, 715
SpeI ACTAGT 1 cut(s) 619
Sse9I AATT 5 cut(s) 66, 651, 666, 743, 905
SsiI CCGC 3 cut(s) 253, 382, 605
SspMI CTAG 5 cut(s) 51, 620, 860, 875, 989
StyD4I CCNGG 2 cut(s) 43, 835
TaaI ACNGT 3 cut(s) 371, 442, 964
TaqI TCGA 1 cut(s) 773
TasI AATT 5 cut(s) 66, 651, 666, 743, 905
TatI WGTACW 1 cut(s) 1003
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 4 cut(s) 256, 472, 733, 759
TscAI CASTG 5 cut(s) 181, 376, 447, 615, 969
TseI GCWGC 3 cut(s) 856, 950, 992
TspDTI ATGAA 5 cut(s) 17, 360, 756, 857, 935
TspRI CASTG 5 cut(s) 181, 376, 447, 615, 969
VpaK11BI GGWCC 2 cut(s) 47, 715
XapI RAATTY 2 cut(s) 666, 743
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 5 cut(s) 51, 620, 860, 875, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.