Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011279.1

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Forward (+)

4415 .. 10981

Gene Structure 6567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011279.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgatggtgagcttcgtctccggaagatggaagccatcaccgaatcttaggtttcttcttcaatccaagagaaacccaaaggaggagaaattatgcagtttcgcggctctcctggtattgccaaacccaaagatgtcgaggctgtttgagatagagacgagcccagttgctggaagcatgtggacgtggccgagaccagccttgtatgttgcaaagaagcttagctatggatgtgtcaatctatcgtttgctccttacggtgagtattggagggaggtaaggaagtttgtgatcttggaactacttggtccaaagagggtccaaatgtttcagtctatgagggatgaagaggttggagttatgattgactcaatagctcataagtgttatggtattgtcaatctcagtgaagtgacagttaccttggccaacaatgttttgtgtcgctgcacttttggtaacaagtgtgatggggaaggtgaaattggcatgagcagaagtcatgagttgcttaaagagtcggtggtccttttgggaggactctatgtatcagattttctactatggatcagctggataaacaagttcaatgagttcaagcctcctcatgatagcaagacatgggtatttattgtggtgggagcttcggttttgtgcctcattctgttgattttaagcattctttggtggcaagcctgtctggataagaagacatcaagagaagaagctctgagaggactggatctgcaaactggctttttcaccttcaagcaaataaaagctgccactaataactttgatcctgtaaacaaaattggggaaggtggttttggatctgtgtacaagggaatactactggatggtactataattgcagtaaagcaattatctgcaaaatcaaagcaaggaaatcgagaacttgtgaacgaaataggcatgatttctggtttacagcgtccaaatgtcgtgagattgtatggatgttgtattgaagcaaatcagttacttttggtatatgaatacatggagaacaatagccttgcacatgatttgtttggtaagcttatcatccctaggaacaatattgaaatcatgtattacaaactgtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

370

Amino Acids

41.98

Weight (kDa)

8.96

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccII	CGCG	1 cut(s)	104
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	4 cut(s)	575, 750, 794, 841
AcoI	YGGCCR	2 cut(s)	188, 426
AfaI	GTAC	3 cut(s)	842, 865, 1109
AfiI	CCNNNNNNNGG	3 cut(s)	27, 82, 170
AgsI	TTSAA	6 cut(s)	62, 589, 598, 769, 992, 1088
AjiI	CACGTC	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	111
AjuI	GAANNNNNNNTTGG	4 cut(s)	468, 500, 813, 845
AluBI	AGCT	9 cut(s)	12, 220, 225, 377, 573, 644, 728, 782, 1063
AluI	AGCT	9 cut(s)	12, 220, 225, 377, 573, 644, 728, 782, 1063
Alw26I	GTCTC	3 cut(s)	22, 149, 187
AlwI	GGATC	4 cut(s)	575, 750, 794, 841
AlwNI	CAGNNNCTG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	20
AoxI	GGCC	2 cut(s)	188, 426
ApeKI	GCWGC	2 cut(s)	447, 782
AspA2I	CCTAGG	1 cut(s)	1073
AspS9I	GGNCC	3 cut(s)	308, 319, 526
AsuHPI	GGTGA	5 cut(s)	19, 30, 272, 491, 754
AvaII	GGWCC	3 cut(s)	308, 319, 526
AvrII	CCTAGG	1 cut(s)	1073
BalI	TGGCCA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	434, 769
BccI	CCATC	4 cut(s)	21, 43, 464, 854
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	3 cut(s)	22, 149, 187
BfaI	CTAG	1 cut(s)	1074
BisI	GCNGC	3 cut(s)	105, 448, 783
BlnI	CCTAGG	1 cut(s)	1073
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	3 cut(s)	106, 449, 784
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	3 cut(s)	308, 319, 526
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	3 cut(s)	308, 319, 526
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	158
BmuI	ACTGGG	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	716
Bpu1102I	GCTNAGC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	423, 1073
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 82, 170
Bse1I	ACTGG	4 cut(s)	164, 744, 757, 861
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	423, 1073
BseGI	GGATG	5 cut(s)	236, 349, 865, 986, 1068
BseLI	CCNNNNNNNGG	3 cut(s)	27, 82, 170
BseMII	CTCAG	2 cut(s)	418, 722
BseNI	ACTGG	4 cut(s)	164, 744, 757, 861
BseRI	GAGGAG	2 cut(s)	98, 594
BseXI	GCAGC	2 cut(s)	434, 769
BsgI	GTGCAG	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	190, 428
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	27, 82, 170
BsmAI	GTCTC	3 cut(s)	22, 149, 187
BsmBI	CGTCTC	2 cut(s)	22, 149
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	2 cut(s)	190, 428
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp13I	TCCGGA	1 cut(s)	20
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	5 cut(s)	291, 567, 742, 799, 833
Bsp1720I	GCTNAGC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	190, 428
BspCNI	CTCAG	2 cut(s)	417, 723
BspEI	TCCGGA	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	104
BspHI	TCATGA	2 cut(s)	502, 607
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	4 cut(s)	575, 750, 794, 841
BspTNI	GGTCTC	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	4 cut(s)	164, 744, 757, 861
BssECI	CCNNGG	2 cut(s)	423, 1073
BssMI	GATC	5 cut(s)	291, 567, 742, 799, 833
BssT1I	CCWWGG	2 cut(s)	423, 1073
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	3 cut(s)	260, 418, 1107
Bst6I	CTCTTC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	840
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	4 cut(s)	47, 221, 404, 731
BstF5I	GGATG	5 cut(s)	236, 349, 865, 986, 1068
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	5 cut(s)	294, 570, 745, 802, 836
BstMAI	GTCTC	3 cut(s)	22, 149, 187
BstMBI	GATC	5 cut(s)	291, 567, 742, 799, 833
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	434, 769
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	2 cut(s)	742, 833
BstYI	RGATCY	2 cut(s)	742, 833
BsuRI	GGCC	2 cut(s)	190, 428
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	5 cut(s)	236, 349, 865, 986, 1068
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	170
CciI	TCATGA	2 cut(s)	502, 607
Cfr13I	GGNCC	3 cut(s)	308, 319, 526
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	3 cut(s)	841, 864, 1108
CviAII	CATG	9 cut(s)	178, 490, 503, 608, 621, 937, 1024, 1046, 1093
CviQI	GTAC	3 cut(s)	841, 864, 1108
DdeI	CTNAG	4 cut(s)	47, 221, 404, 731
DpnI	GATC	5 cut(s)	293, 569, 744, 801, 835
DpnII	GATC	5 cut(s)	291, 567, 742, 799, 833
EaeI	YGGCCR	2 cut(s)	188, 426
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	423, 1073
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	3 cut(s)	308, 319, 526
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	2 cut(s)	423, 1073
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	2 cut(s)	423, 1073
Esp3I	CGTCTC	2 cut(s)	22, 149
FaeI	CATG	9 cut(s)	181, 493, 506, 611, 624, 940, 1027, 1049, 1096
FatI	CATG	9 cut(s)	177, 489, 502, 607, 620, 936, 1023, 1045, 1092
Fnu4HI	GCNGC	3 cut(s)	105, 448, 783
FokI	GGATG	5 cut(s)	243, 356, 872, 993, 1055
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	105, 448, 783
FspBI	CTAG	1 cut(s)	1074
GluI	GCNGC	3 cut(s)	105, 448, 783
HaeIII	GGCC	2 cut(s)	190, 428
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	944
Hin1II	CATG	9 cut(s)	181, 493, 506, 611, 624, 940, 1027, 1049, 1096
HindIII	AAGCTT	2 cut(s)	218, 1061
HinfI	GANTC	4 cut(s)	43, 368, 518, 540
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	5 cut(s)	19, 30, 272, 491, 754
Hpy166II	GTNNAC	5 cut(s)	183, 808, 841, 925, 950
Hpy188I	TCNGA	2 cut(s)	553, 732
Hpy188III	TCNNGA	7 cut(s)	21, 503, 608, 701, 717, 914, 967
Hpy8I	GTNNAC	5 cut(s)	183, 808, 841, 925, 950
HpyAV	CCTTC	3 cut(s)	470, 775, 815
HpyCH4III	ACNGT	3 cut(s)	260, 418, 1107
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	7 cut(s)	96, 212, 450, 748, 875, 893, 1043
HpyF3I	CTNAG	4 cut(s)	47, 221, 404, 731
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	9 cut(s)	181, 493, 506, 611, 624, 940, 1027, 1049, 1096
Kpn2I	TCCGGA	1 cut(s)	20
Kzo9I	GATC	5 cut(s)	291, 567, 742, 799, 833
LmnI	GCTCC	2 cut(s)	256, 641
Lsp1109I	GCAGC	2 cut(s)	434, 769
MaeI	CTAG	1 cut(s)	1074
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	4 cut(s)	412, 418, 458, 1002
MalI	GATC	5 cut(s)	293, 569, 744, 801, 835
MboI	GATC	5 cut(s)	291, 567, 742, 799, 833
MboII	GAAGA	6 cut(s)	36, 47, 50, 359, 721, 734
MflI	RGATCY	2 cut(s)	742, 833
MhlI	GDGCHC	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	5 cut(s)	89, 483, 813, 870, 884
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	3 cut(s)	362, 527, 534
MmeI	TCCRAC	1 cut(s)	334
Mox20I	TGGCCA	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	2 cut(s)	513, 674
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	104
NdeII	GATC	5 cut(s)	291, 567, 742, 799, 833
NlaIII	CATG	9 cut(s)	181, 493, 506, 611, 624, 940, 1027, 1049, 1096
NlaIV	GGNNCC	1 cut(s)	320
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	181
PagI	TCATGA	2 cut(s)	502, 607
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	106, 449, 784
PleI	GAGTC	3 cut(s)	362, 526, 534
PpsI	GAGTC	3 cut(s)	362, 526, 534
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	3 cut(s)	308, 319, 526
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	742, 833
PvuII	CAGCTG	1 cut(s)	573
RsaI	GTAC	3 cut(s)	842, 865, 1109
RsaNI	GTAC	3 cut(s)	841, 864, 1108
SaqAI	TTAA	2 cut(s)	513, 674
SatI	GCNGC	3 cut(s)	105, 448, 783
Sau3AI	GATC	5 cut(s)	291, 567, 742, 799, 833
Sau96I	GGNCC	3 cut(s)	308, 319, 526
SchI	GAGTC	3 cut(s)	362, 527, 534
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	164
SinI	GGWCC	3 cut(s)	308, 319, 526
Sse9I	AATT	5 cut(s)	89, 483, 813, 870, 884
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	1084
SspMI	CTAG	1 cut(s)	1074
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	2 cut(s)	423, 1073
TaaI	ACNGT	3 cut(s)	260, 418, 1107
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	2 cut(s)	137, 913
TasI	AATT	5 cut(s)	89, 483, 813, 870, 884
TatI	WGTACW	2 cut(s)	840, 1107
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	513, 674
Tru9I	TTAA	2 cut(s)	513, 674
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	447, 782
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	360, 1032
TspRI	CASTG	1 cut(s)	412
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	3 cut(s)	308, 319, 526
XceI	RCATGY	1 cut(s)	181
XmaJI	CCTAGG	1 cut(s)	1073
XspI	CTAG	1 cut(s)	1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.