Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Reverse (-)

79300860 .. 79304204

Gene Structure 3345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG617400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACGAGGCTGCTTGAGACAGAGACGAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGACTAGTAAGGGTAATATGGGCCAATCATGTTCTTGCAATTAGGCTCGAAGCCTACTTTAGTAGTCTCCTCAGCCAAAATGGCAAGAGAGGCAGACCAGCCTTGTATGTTGCAAAGAAGCTTGGCTATGGATGTGTCAATCTATCGTTTGCTCCTTATGGTGAGTATTGGAGGGAGGTAAGGAAGTTTGTGATCTTGGAACTACTTGGTCCAAAGAGGGTCCAAATGTTTCAATTTGTGAGAGATGAAGAGGTTGGAGTTATGATCGACTCAATAGCTCATAAGTGTTATGGTATTGTCAATCTCAGTGAAGTGACAGTTATCTTGGCCAACAATGTTTTGTGTCGCTGCGCTTTTGGTAACAAGTATGATGGGGAAGGTGAAATTGGCATGAGCAGAAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

155

Amino Acids

17.6

Weight (kDa)

9.14

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	38
AcoI	YGGCCR	2 cut(s)	56, 387
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	293
AhlI	ACTAGT	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	2 cut(s)	181, 338
AluI	AGCT	2 cut(s)	181, 338
Alw26I	GTCTC	4 cut(s)	11, 17, 55, 131
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	3 cut(s)	56, 81, 387
ApeKI	GCWGC	2 cut(s)	10, 408
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	81, 269, 280
AsuHPI	GGTGA	2 cut(s)	233, 452
AvaII	GGWCC	2 cut(s)	269, 280
BalI	TGGCCA	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	425
BcoDI	GTCTC	4 cut(s)	11, 17, 55, 131
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	2 cut(s)	11, 409
BlsI	GCNGC	2 cut(s)	12, 410
Bme18I	GGWCC	2 cut(s)	269, 280
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	3 cut(s)	81, 269, 280
BmiI	GGNNCC	1 cut(s)	281
BmrI	ACTGGG	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	145, 379
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	395
BshFI	GGCC	3 cut(s)	58, 83, 389
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	4 cut(s)	11, 17, 55, 131
BsmBI	CGTCTC	1 cut(s)	17
BsnI	GGCC	3 cut(s)	58, 83, 389
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	252, 324
BspANI	GGCC	3 cut(s)	58, 83, 389
BspCNI	CTCAG	2 cut(s)	144, 378
BspLI	GGNNCC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	252, 324
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	131, 365
BstF5I	GGATG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	2 cut(s)	255, 327
BstMAI	GTCTC	4 cut(s)	11, 17, 55, 131
BstMBI	GATC	2 cut(s)	252, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 150
BstNSI	RCATGY	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	58, 83, 389
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	81, 269, 280
CviAII	CATG	3 cut(s)	46, 89, 451
DdeI	CTNAG	2 cut(s)	131, 365
DpnI	GATC	2 cut(s)	254, 326
DpnII	GATC	2 cut(s)	252, 324
EaeI	YGGCCR	2 cut(s)	56, 387
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	269, 280
EcoT38I	GRGCYC	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	3 cut(s)	49, 92, 454
FatI	CATG	3 cut(s)	45, 88, 450
Fnu4HI	GCNGC	2 cut(s)	11, 409
FokI	GGATG	1 cut(s)	204
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	11, 409
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	2 cut(s)	11, 409
HaeIII	GGCC	3 cut(s)	58, 83, 389
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	49, 92, 454
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	2 cut(s)	233, 452
Hpy166II	GTNNAC	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	98, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 150
HpyF3I	CTNAG	2 cut(s)	131, 365
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	49, 92, 454
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	252, 324
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	24, 45, 171
Lsp1109I	GCAGC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	373, 419
MalI	GATC	2 cut(s)	254, 326
MboI	GATC	2 cut(s)	252, 324
MboII	GAAGA	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	3 cut(s)	99, 293, 444
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	140, 143, 225, 229, 270, 304
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	141, 150
NdeII	GATC	2 cut(s)	252, 324
NlaIII	CATG	3 cut(s)	49, 92, 454
NlaIV	GGNNCC	1 cut(s)	281
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	12, 410
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	3 cut(s)	81, 269, 280
PstNI	CAGNNNCTG	1 cut(s)	38
SatI	GCNGC	2 cut(s)	11, 409
Sau3AI	GATC	2 cut(s)	252, 324
Sau96I	GGNCC	3 cut(s)	81, 269, 280
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	6 cut(s)	56, 183, 240, 315, 340, 442
SinI	GGWCC	2 cut(s)	269, 280
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	3 cut(s)	99, 293, 444
SspMI	CTAG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	108, 327
TasI	AATT	3 cut(s)	99, 293, 444
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	2 cut(s)	10, 408
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	373
Van91I	CCANNNNNTGG	1 cut(s)	38
VpaK11BI	GGWCC	2 cut(s)	269, 280
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.