MD06G1224800.v1.1

Cytochrome p450

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
35544320 .. 35546085
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1224800.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGGCTTCACAACTCCTACTCTTTGTTTTCCTCATACCCTTTATTTTCTTGCTCTTGGTTAAACACAAAAGGAAAAGTATTGCTTCTCAAGCAAGGAGGCTGCCTCTTAGTCCTAGGAGGATGCCTCTCATTGGCAACCTTCACAAGCTCTCCAATGGCGGCTTACTCCATCACACCCTTGAGCGCCTAGCTGCCAAATATGGAGATCTCATGTTTTTACAACTAGGCTTAGTATCCACTCTAGTGGTCTCCTCGTCTCATATTGCAAAAGAGATCTTCAAAACTCACGACCTCGCTTTTTCAGGTAGGCCGGCCTTGTATACTCCAAAGAACCTTAGTTATGACTCTGCTGATCTGATAATTTCTCCCTATGGAGAGTATTGGAGGGAGGTAAAAAAGATTGTGATCTTGAAACTGCTTAGTGCAAAGAGGGTTAAAATGTTTCAATCTGTGAGGGATGAAGAGGTCGGACTTATGCTAGAATCTATCAAATATTTTAAGGGTCCGGTCAATATCAGTGAACTCACACTTTTCTTGGCAAACAATGTTTTGTGTTATTCAGCATTTGGTAAAAAGTATGATGATGGGGGAGAGATTGGAAAGAGCAGGATTCCTGAGTTGCTTGAAGAGACAAGGGCCCTGTTGGGAAGATTTTGCATGTCAGACTTCCTACCAGTGATTGAGGAACACCTTGATCCGAAAAGGCTTAAACCGGAATATGAAGATCTTGTTGATGTACTCCTTCGAGTTCAGAAAGATCCAAATCAAACAATCGCCCTCACTAAGGACCAAATTAAGGGTGTTTTAATCGACATGTTTATTGCAGGGACTGATACTTCCGCAACCACACTGGTATGGACAATGGTTGAATTGATTAGGAATCCCCGAATATTGAGGAAAGCACAAGACGAGGTGAGAGAAGTTTTGAAGGGAAAACGAAAGGTGGAAGAAACTGATCTGTCTGAACTCGTGTACCTAAAGTTGGTCTTGAAGAAGAGTTTTAGACTACATCCATCGGCACCATTACTAGTTCCAAGAGAAACCTTAGAGAGTTGCACAATTGAAGGGTACGAAATTCCTGCCAACACAATGGTGTTTGTGCATGCAAAAATGATAGGAAATGACCTGAAATGTTGGGAGAATCCAAAAGAATTCTTGCCTGAGAGATCCATGGACAGCTCAGTTGACTACAAAGGAAACCATTTTGAACTTTTACCATTTGGTGCCGGAATGAGGGGTTGTCCTGGTATCAACTTTGGTGTGAAGCTGATTGAACTTGCGCTAGCGAATCTTCTTTATTGTTTCGACTGGGAACTGCATCACGGGGTGAGAAGAGAAAACTTGGACATGGAAGAGGCTGCTGGCATTACAGTTGGCAAGAAAGTTCCTCTATTTCTAACTGCTCGACCTGCATATCCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

53.68

Weight (kDa)

8.86

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 225 1.6e-16 Cytochrome P450
p450 PF00067 226 - 456 2.1e-58 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1417
AccB1I GGYRCC 2 cut(s) 1018, 1223
AccI GTMKAC 1 cut(s) 320
AciI CCGC 2 cut(s) 159, 840
AclWI GGATC 3 cut(s) 689, 752, 1161
AcsI RAATTY 2 cut(s) 1074, 1151
AdeI CACNNNGTG 1 cut(s) 1327
AfaI GTAC 3 cut(s) 738, 974, 1070
AfiI CCNNNNNNNGG 5 cut(s) 131, 784, 796, 982, 1233
AflIII ACRYGT 1 cut(s) 813
AhlI ACTAGT 1 cut(s) 1027
AjnI CCWGG 1 cut(s) 1243
AleI CACNNNNGTG 2 cut(s) 242, 1091
AluBI AGCT 4 cut(s) 148, 191, 1179, 1267
AluI AGCT 4 cut(s) 148, 191, 1179, 1267
Alw26I GTCTC 3 cut(s) 253, 261, 623
AlwI GGATC 3 cut(s) 689, 752, 1161
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 3 cut(s) 308, 312, 636
ApaI GGGCCC 1 cut(s) 640
ApeKI GCWGC 3 cut(s) 100, 191, 1358
ApoI RAATTY 2 cut(s) 1074, 1151
AspA2I CCTAGG 1 cut(s) 113
AspLEI GCGC 2 cut(s) 186, 1282
AspS9I GGNCC 4 cut(s) 503, 636, 637, 787
AsuHPI GGTGA 2 cut(s) 925, 1339
AsuNHI GCTAGC 1 cut(s) 1282
AvaII GGWCC 2 cut(s) 503, 787
AvrII CCTAGG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 640
BaeI ACNNNNGTAYC 2 cut(s) 956, 989
BanI GGYRCC 2 cut(s) 1018, 1223
BanII GRGCYC 1 cut(s) 640
BauI CACGAG 1 cut(s) 968
BbvI GCAGC 3 cut(s) 87, 178, 1345
BccI CCATC 3 cut(s) 177, 578, 1021
BcgI CGANNNNNNTGC 2 cut(s) 1061, 1095
BciT130I CCWGG 1 cut(s) 1245
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 3 cut(s) 253, 261, 623
BcuI ACTAGT 1 cut(s) 1027
BfaI CTAG 7 cut(s) 114, 188, 224, 242, 479, 1028, 1283
BfoI RGCGCY 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 1417
BfuI GTATCC 1 cut(s) 244
BglII AGATCT 3 cut(s) 205, 273, 724
BisI GCNGC 4 cut(s) 101, 160, 192, 1359
BlnI CCTAGG 1 cut(s) 113
BlsI GCNGC 4 cut(s) 102, 161, 193, 1360
Bme1390I CCNGG 1 cut(s) 1245
Bme18I GGWCC 2 cut(s) 503, 787
BmgT120I GGNCC 4 cut(s) 503, 636, 637, 787
BmiI GGNNCC 4 cut(s) 504, 638, 1020, 1225
BmrFI CCNGG 1 cut(s) 1245
BmrI ACTGGG 1 cut(s) 1318
BmsI GCATC 2 cut(s) 111, 1327
BmtI GCTAGC 1 cut(s) 1286
BmuI ACTGGG 1 cut(s) 1318
BplI GAGNNNNNCTC 4 cut(s) 88, 120, 109, 141
BpuEI CTTGAG 2 cut(s) 72, 200
BsaBI GATNNNNATC 2 cut(s) 404, 762
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 113, 1170
BsaWI WCCGGW 2 cut(s) 505, 712
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 784, 796, 982, 1233
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 3 cut(s) 674, 855, 1313
Bse8I GATNNNNATC 2 cut(s) 404, 762
BseBI CCWGG 1 cut(s) 1245
BseDI CCNNGG 2 cut(s) 113, 1170
BseGI GGATG 3 cut(s) 126, 463, 1009
BseJI GATNNNNATC 2 cut(s) 404, 762
BseLI CCNNNNNNNGG 5 cut(s) 131, 784, 796, 982, 1233
BseMII CTCAG 3 cut(s) 606, 1152, 1194
BseNI ACTGG 3 cut(s) 674, 855, 1313
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 3 cut(s) 87, 178, 1345
BshFI GGCC 3 cut(s) 310, 314, 638
BshNI GGYRCC 2 cut(s) 1018, 1223
BsiSI CCGG 4 cut(s) 311, 506, 713, 1227
BslFI GGGAC 1 cut(s) 841
BslI CCNNNNNNNGG 5 cut(s) 131, 784, 796, 982, 1233
BsmAI GTCTC 3 cut(s) 253, 261, 623
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 841
BsnI GGCC 3 cut(s) 310, 314, 638
Bso31I GGTCTC 1 cut(s) 253
Bsp120I GGGCCC 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 9 cut(s) 205, 273, 352, 405, 694, 724, 757, 955, 1166
Bsp19I CCATGG 1 cut(s) 1170
BspACI CCGC 2 cut(s) 159, 840
BspANI GGCC 3 cut(s) 310, 314, 638
BspCNI CTCAG 3 cut(s) 607, 1153, 1193
BspLI GGNNCC 4 cut(s) 504, 638, 1020, 1225
BspMI ACCTGC 1 cut(s) 1417
BspOI GCTAGC 1 cut(s) 1286
BspPI GGATC 3 cut(s) 689, 752, 1161
BspT107I GGYRCC 2 cut(s) 1018, 1223
BspTNI GGTCTC 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 3 cut(s) 674, 855, 1313
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 113, 1170
BssMI GATC 9 cut(s) 205, 273, 352, 405, 694, 724, 757, 955, 1166
BssNAI GTATAC 1 cut(s) 321
BssSI CACGAG 1 cut(s) 968
BssT1I CCWWGG 2 cut(s) 113, 1170
Bst1107I GTATAC 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 968
Bst2UI CCWGG 1 cut(s) 1245
Bst4CI ACNGT 1 cut(s) 1372
Bst6I CTCTTC 5 cut(s) 456, 621, 989, 1327, 1347
BstC8I GCNNGC 4 cut(s) 312, 1104, 1284, 1363
BstDEI CTNAG 9 cut(s) 107, 229, 335, 419, 615, 783, 1045, 1161, 1180
BstDSI CCRYGG 1 cut(s) 1170
BstENI CCTNNNNNAGG 1 cut(s) 782
BstF5I GGATG 3 cut(s) 126, 463, 1009
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 186, 1282
BstKTI GATC 9 cut(s) 208, 276, 355, 408, 697, 727, 760, 958, 1169
BstMAI GTCTC 3 cut(s) 253, 261, 623
BstMBI GATC 9 cut(s) 205, 273, 352, 405, 694, 724, 757, 955, 1166
BstMWI GCNNNNNNNGC 2 cut(s) 89, 1409
BstNI CCWGG 1 cut(s) 1245
BstNSI RCATGY 3 cut(s) 661, 817, 1106
BstSCI CCNGG 1 cut(s) 1243
BstSLI GKGCMC 1 cut(s) 640
BstV1I GCAGC 3 cut(s) 87, 178, 1345
BstX2I RGATCY 5 cut(s) 205, 273, 724, 757, 1166
BstXI CCANNNNNNTGG 2 cut(s) 244, 1090
BstYI RGATCY 5 cut(s) 205, 273, 724, 757, 1166
BstZ17I GTATAC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 3 cut(s) 310, 314, 638
BtgI CCRYGG 1 cut(s) 1170
BtsCI GGATG 3 cut(s) 126, 463, 1009
BtsIMutI CAGTG 3 cut(s) 523, 681, 848
BveI ACCTGC 1 cut(s) 1417
Cac8I GCNNGC 4 cut(s) 312, 1104, 1284, 1363
CaiI CAGNNNCTG 1 cut(s) 830
CfoI GCGC 2 cut(s) 186, 1282
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 4 cut(s) 503, 636, 637, 787
Csp6I GTAC 3 cut(s) 737, 973, 1069
CviAII CATG 6 cut(s) 211, 658, 814, 1103, 1171, 1348
CviQI GTAC 3 cut(s) 737, 973, 1069
DdeI CTNAG 9 cut(s) 107, 229, 335, 419, 615, 783, 1045, 1161, 1180
DpnI GATC 9 cut(s) 207, 275, 354, 407, 696, 726, 759, 957, 1168
DpnII GATC 9 cut(s) 205, 273, 352, 405, 694, 724, 757, 955, 1166
DraIII CACNNNGTG 1 cut(s) 1327
Eam1104I CTCTTC 5 cut(s) 456, 621, 989, 1327, 1347
EarI CTCTTC 5 cut(s) 456, 621, 989, 1327, 1347
Eco130I CCWWGG 2 cut(s) 113, 1170
Eco24I GRGCYC 1 cut(s) 640
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 503, 787
EcoNI CCTNNNNNAGG 1 cut(s) 782
EcoO109I RGGNCCY 2 cut(s) 636, 637
EcoRI GAATTC 1 cut(s) 1151
EcoRII CCWGG 1 cut(s) 1243
EcoT14I CCWWGG 2 cut(s) 113, 1170
EcoT38I GRGCYC 1 cut(s) 640
ErhI CCWWGG 2 cut(s) 113, 1170
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 6 cut(s) 214, 661, 817, 1106, 1174, 1351
FalI AAGNNNNNCTT 4 cut(s) 67, 99, 971, 1003
FaqI GGGAC 1 cut(s) 841
FatI CATG 6 cut(s) 210, 657, 813, 1102, 1170, 1347
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 4 cut(s) 101, 160, 192, 1359
FokI GGATG 3 cut(s) 133, 470, 996
FriOI GRGCYC 1 cut(s) 640
FseI GGCCGGCC 1 cut(s) 314
Fsp4HI GCNGC 4 cut(s) 101, 160, 192, 1359
FspBI CTAG 7 cut(s) 114, 188, 224, 242, 479, 1028, 1283
GlaI GCGC 2 cut(s) 185, 1281
GluI GCNGC 4 cut(s) 101, 160, 192, 1359
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 3 cut(s) 310, 314, 638
HapII CCGG 4 cut(s) 311, 506, 713, 1227
HhaI GCGC 2 cut(s) 186, 1282
Hin1II CATG 6 cut(s) 214, 661, 817, 1106, 1174, 1351
Hin6I GCGC 2 cut(s) 184, 1280
HinP1I GCGC 2 cut(s) 184, 1280
HincII GTYRAC 1 cut(s) 1186
HindII GTYRAC 1 cut(s) 1186
HinfI GANTC 6 cut(s) 344, 482, 610, 880, 1141, 1288
HpaII CCGG 4 cut(s) 311, 506, 713, 1227
HphI GGTGA 2 cut(s) 925, 1339
Hpy166II GTNNAC 4 cut(s) 321, 521, 973, 1186
Hpy188I TCNGA 6 cut(s) 357, 470, 664, 699, 753, 964
Hpy188III TCNNGA 4 cut(s) 287, 409, 614, 988
Hpy8I GTNNAC 4 cut(s) 321, 521, 973, 1186
HpyAV CCTTC 4 cut(s) 149, 752, 922, 1058
HpyCH4III ACNGT 1 cut(s) 1372
HpyCH4V TGCA 9 cut(s) 266, 425, 657, 824, 1056, 1102, 1106, 1318, 1412
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 1409
HpyF3I CTNAG 9 cut(s) 107, 229, 335, 419, 615, 783, 1045, 1161, 1180
Hsp92II CATG 6 cut(s) 214, 661, 817, 1106, 1174, 1351
HspAI GCGC 2 cut(s) 184, 1280
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 9 cut(s) 205, 273, 352, 405, 694, 724, 757, 955, 1166
Lsp1109I GCAGC 3 cut(s) 87, 178, 1345
LweI GCATC 2 cut(s) 111, 1327
MaeI CTAG 7 cut(s) 114, 188, 224, 242, 479, 1028, 1283
MalI GATC 9 cut(s) 207, 275, 354, 407, 696, 726, 759, 957, 1168
MboI GATC 9 cut(s) 205, 273, 352, 405, 694, 724, 757, 955, 1166
MfeI CAATTG 1 cut(s) 1059
MflI RGATCY 5 cut(s) 205, 273, 724, 757, 1166
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 6 cut(s) 360, 792, 869, 1059, 1074, 1151
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 448
MroNI GCCGGC 1 cut(s) 310
MseI TTAA 6 cut(s) 60, 435, 498, 708, 795, 806
MslI CAYNNNNRTG 3 cut(s) 242, 853, 1091
MspI CCGG 4 cut(s) 311, 506, 713, 1227
MspR9I CCNGG 1 cut(s) 1245
MunI CAATTG 1 cut(s) 1059
MvaI CCWGG 1 cut(s) 1245
MwoI GCNNNNNNNGC 2 cut(s) 89, 1409
NaeI GCCGGC 1 cut(s) 312
NcoI CCATGG 1 cut(s) 1170
NdeII GATC 9 cut(s) 205, 273, 352, 405, 694, 724, 757, 955, 1166
NgoMIV GCCGGC 1 cut(s) 310
NheI GCTAGC 1 cut(s) 1282
NlaIII CATG 6 cut(s) 214, 661, 817, 1106, 1174, 1351
NlaIV GGNNCC 4 cut(s) 504, 638, 1020, 1225
NspI RCATGY 3 cut(s) 661, 817, 1106
OliI CACNNNNGTG 2 cut(s) 242, 1091
PaeI GCATGC 1 cut(s) 1106
PciI ACATGT 1 cut(s) 813
PdiI GCCGGC 1 cut(s) 312
PfeI GAWTC 5 cut(s) 482, 610, 880, 1141, 1288
PkrI GCNGC 4 cut(s) 102, 161, 193, 1360
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PscI ACATGT 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 1243
PspGI CCWGG 1 cut(s) 1243
PspN4I GGNNCC 4 cut(s) 504, 638, 1020, 1225
PspOMI GGGCCC 1 cut(s) 636
PspPI GGNCC 4 cut(s) 503, 636, 637, 787
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 5 cut(s) 205, 273, 724, 757, 1166
RigI GGCCGGCC 1 cut(s) 314
RsaI GTAC 3 cut(s) 738, 974, 1070
RsaNI GTAC 3 cut(s) 737, 973, 1069
RseI CAYNNNNRTG 3 cut(s) 242, 853, 1091
SaqAI TTAA 6 cut(s) 60, 435, 498, 708, 795, 806
SatI GCNGC 4 cut(s) 101, 160, 192, 1359
Sau3AI GATC 9 cut(s) 205, 273, 352, 405, 694, 724, 757, 955, 1166
Sau96I GGNCC 4 cut(s) 503, 636, 637, 787
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 1245
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 2 cut(s) 111, 1327
SinI GGWCC 2 cut(s) 503, 787
SmiMI CAYNNNNRTG 3 cut(s) 242, 853, 1091
SmlI CTYRAG 2 cut(s) 87, 179
SmoI CTYRAG 2 cut(s) 87, 179
SpeI ACTAGT 1 cut(s) 1027
SphI GCATGC 1 cut(s) 1106
Sse9I AATT 6 cut(s) 360, 792, 869, 1059, 1074, 1151
SsiI CCGC 2 cut(s) 159, 840
SspI AATATT 2 cut(s) 494, 891
SspMI CTAG 7 cut(s) 114, 188, 224, 242, 479, 1028, 1283
StyD4I CCNGG 1 cut(s) 1243
StyI CCWWGG 2 cut(s) 113, 1170
TaaI ACNGT 1 cut(s) 1372
TaqI TCGA 4 cut(s) 745, 810, 1305, 1405
TasI AATT 6 cut(s) 360, 792, 869, 1059, 1074, 1151
TatI WGTACW 1 cut(s) 736
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 5 cut(s) 482, 610, 880, 1141, 1288
Tru1I TTAA 6 cut(s) 60, 435, 498, 708, 795, 806
Tru9I TTAA 6 cut(s) 60, 435, 498, 708, 795, 806
TscAI CASTG 3 cut(s) 523, 681, 855
TseI GCWGC 3 cut(s) 100, 191, 1358
TspDTI ATGAA 2 cut(s) 474, 735
TspRI CASTG 3 cut(s) 523, 681, 855
VpaK11BI GGWCC 2 cut(s) 503, 787
XagI CCTNNNNNAGG 1 cut(s) 782
XapI RAATTY 2 cut(s) 1074, 1151
XceI RCATGY 3 cut(s) 661, 817, 1106
XmaJI CCTAGG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 7 cut(s) 114, 188, 224, 242, 479, 1028, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.