Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Forward (+)

3898071 .. 3899606

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGTTCTTACTTATCCTTGTCCATGGTGCTCCTCCTCATCATTTTTCTCGTATCCTTTACTTTCTTGTTCTTGATGATGAAGCAGAGGAAGCAAAATGCTGAAGCAAAGAGGTTGCCTCCTGGTCCTAGAAGGTTACCTCTAATTGGTAACCTTCACCATCTTTCTGATGATTTACCTCATTGTGCCCTTGAACAGCTTTCCAGTCAATACGGACCGCTCATGTTCTTGCAATTAGGCTCAAGATCTACTTTAGTAGTCTCTTCAGCAGAAATGGCAAGAGAGGTTTTCAAAACTCATGACCTCATTTTTTCAAGCAGACCAGATTTCTTGTATGTTGCAAAGAGGCTTGGCTATGACTCCAGTATATCATTTGCTCCCTATGGTGAGTATTGGAGGGAGGTTAGGAAGATTGTGATATTGGAACTACTTAGTGCAAAGCGGATTCAGATGTTTCGTTCCGTGAGAGATGAAGAGGTTGGAAATATGATTGATGATATAGCCCGTACTTCTAATGGTCTCATCAATCTCAATGAACAGTCACATTTCTTATCCATCAGTGTCTTGTGCCGCTCAGCTTTTGGCAAAAAGTATGGTGGTGATGGAGGTGTTACTAGCAAGACCAGAATTCTTGAATCGCTTGAAGAGGCAACTGATAAAGTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

223

Amino Acids

25.13

Weight (kDa)

9.07

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	40 - 199	1.2e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	220, 573
AciI	CCGC	3 cut(s)	218, 442, 571
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	123, 249
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	5 cut(s)	194, 292, 315, 635, 644
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	2 cut(s)	199, 578
AluI	AGCT	2 cut(s)	199, 578
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	265, 524
ApoI	RAATTY	1 cut(s)	627
AspS9I	GGNCC	2 cut(s)	125, 215
AsuHPI	GGTGA	3 cut(s)	149, 398, 611
AvaII	GGWCC	2 cut(s)	125, 215
BaeGI	GKGCMC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	3 cut(s)	168, 563, 596
BciT130I	CCWGG	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	265, 524
BfaI	CTAG	3 cut(s)	129, 615, 667
BfuI	GTATCC	1 cut(s)	64
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	1 cut(s)	571
BlpI	GCTNAGC	1 cut(s)	574
BlsI	GCNGC	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	2 cut(s)	125, 215
BmgT120I	GGNCC	2 cut(s)	125, 215
BmrFI	CCNGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	574
BpuEI	CTTGAG	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	204, 363
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	2 cut(s)	204, 363
BseRI	GAGGAG	2 cut(s)	23, 26
BseSI	GKGCMC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	265, 524
Bso31I	GGTCTC	1 cut(s)	524
Bsp1286I	GDGCHC	2 cut(s)	33, 190
Bsp143I	GATC	1 cut(s)	245
Bsp1720I	GCTNAGC	1 cut(s)	574
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	218, 442, 571
BspCNI	CTCAG	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	524
BsrBI	CCGCTC	2 cut(s)	220, 573
BsrI	ACTGG	2 cut(s)	204, 363
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	3 cut(s)	268, 468, 639
BstDEI	CTNAG	2 cut(s)	431, 574
BstDSI	CCRYGG	1 cut(s)	24
BstEII	GGTNACC	2 cut(s)	135, 149
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	2 cut(s)	265, 524
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 275
BstNI	CCWGG	1 cut(s)	123
BstPI	GGTNACC	2 cut(s)	135, 149
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	565
CciI	TCATGA	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	125, 215
CpoI	CGGWCCG	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	507
CspI	CGGWCCG	1 cut(s)	215
CviAII	CATG	3 cut(s)	25, 223, 299
CviJI	RGCY	6 cut(s)	199, 240, 349, 354, 503, 578
CviKI_1	RGCY	6 cut(s)	199, 240, 349, 354, 503, 578
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	2 cut(s)	431, 574
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
Eam1104I	CTCTTC	3 cut(s)	268, 468, 639
EarI	CTCTTC	3 cut(s)	268, 468, 639
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	125, 215
Eco57I	CTGAAG	2 cut(s)	123, 249
Eco91I	GGTNACC	2 cut(s)	135, 149
EcoO65I	GGTNACC	2 cut(s)	135, 149
EcoRI	GAATTC	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	28, 226, 302
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	3 cut(s)	24, 222, 298
Fnu4HI	GCNGC	1 cut(s)	571
Fsp4HI	GCNGC	1 cut(s)	571
FspBI	CTAG	3 cut(s)	129, 615, 667
GluI	GCNGC	1 cut(s)	571
GsuI	CTGGAG	1 cut(s)	346
Hin1II	CATG	3 cut(s)	28, 226, 302
HinfI	GANTC	3 cut(s)	359, 445, 635
HphI	GGTGA	3 cut(s)	149, 398, 611
Hpy188I	TCNGA	2 cut(s)	169, 450
Hpy188III	TCNNGA	4 cut(s)	73, 243, 299, 632
HpyAV	CCTTC	2 cut(s)	126, 164
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	3 cut(s)	232, 341, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 275
HpyF3I	CTNAG	2 cut(s)	431, 574
Hsp92II	CATG	3 cut(s)	28, 226, 302
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	36, 382
LpnPI	CCDG	6 cut(s)	108, 135, 217, 336, 376, 637
MaeI	CTAG	3 cut(s)	129, 615, 667
MaeIII	GTNAC	4 cut(s)	135, 149, 540, 610
MalI	GATC	1 cut(s)	247
MbiI	CCGCTC	2 cut(s)	220, 573
MboI	GATC	1 cut(s)	245
MboII	GAAGA	4 cut(s)	255, 421, 485, 656
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	2 cut(s)	33, 190
MluCI	AATT	3 cut(s)	144, 233, 627
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	460
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	91, 275
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	28, 226, 302
NmuCI	GTSAC	1 cut(s)	540
PagI	TCATGA	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	445, 635
PkrI	GCNGC	1 cut(s)	572
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	121
PspEI	GGTNACC	2 cut(s)	135, 149
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	125, 215
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
Rsr2I	CGGWCCG	1 cut(s)	215
RsrII	CGGWCCG	1 cut(s)	215
SatI	GCNGC	1 cut(s)	571
Sau3AI	GATC	1 cut(s)	245
Sau96I	GGNCC	2 cut(s)	125, 215
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	33, 190
SinI	GGWCC	2 cut(s)	125, 215
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	3 cut(s)	144, 233, 627
SsiI	CCGC	3 cut(s)	218, 442, 571
SspMI	CTAG	3 cut(s)	129, 615, 667
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	540
TasI	AATT	3 cut(s)	144, 233, 627
TauI	GCSGC	1 cut(s)	573
TfiI	GAWTC	2 cut(s)	445, 635
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	540
Tsp45I	GTSAC	1 cut(s)	540
TspDTI	ATGAA	3 cut(s)	95, 486, 549
TspGWI	ACGGA	2 cut(s)	228, 451
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	125, 215
XapI	RAATTY	1 cut(s)	627
XspI	CTAG	3 cut(s)	129, 615, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.