RLG00000004401

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001697
Physical Location & Seq
Forward (+)
59051576 .. 59055814
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004401

Sequence Viewer

Length: 1020 bp
ATGCACCGCTCTTCTTCCTCCTCAAAAGATCGAGCTGAAAGAAGCTCCCAATTTCAGACTAGTTCTGTCCCTCCACAATGGAAAGAAGAGCATGCAACTTCTCCGATGGCTGCTATTCTTGTTTACATTGCAGTTTTCGTGGTTGCTGCTTATTGTTCTTCATCTGTTTCTTCTGGCTATACTTACCCGGTTTTTGTAGGTTTACTGAGATATATTGGAGGTGCAGTTCCTTACCGACCAGCTGAGGGTTTGGCATTTTCAGTTGCGAAGTTTATACAAAAGGGTGGATCATTCATTAACTATTATATGTCAAATGTTTATAAGTGGTGTAAGCCAAGTGGGGAGTTATTCCTGAATTTTGCTAGAGCTATCAGATTCACCCTTATTGCCTTCCGGGGAATGTTTGGTTATGCGGAACCCTCTGGTATTGAAAAAGCACAAAATGAGGTGAGAAGGGTGGTAAAGGGAAAAGCGAAGGTGGAAGAAAGTGATCTTTCTCAACTAATGTACCTAAAGTTAGTCATCAAAGAAAGTTTAAGAGTACATCCACCTACACCACTACTAGTTCCAAGAGAAACCTCCGAGACTAGCACAATTGAAGGGTATGTAATTCCAGCCAAAACAATGGTGTTTGTCCTTGCAAAAATGATCGGAAGATACCCTAAATGTTGGGAGAATCCAAATGAGTTCTTTCCTGAAAGGTTCTTAGACAGCGAGATTGATTACAAAGGAAAGAATTATGAGCTTTTACCATTTGGAGCAGGAAGGAGGGGTTGTCCTGGTATGAACTTCGATGTACAGGTAGTTGAGCTTGCACTCGCCAATTTGCTTTATTGTTTTGAATGGGAACTGCCTGATGGGGTAAGAGGGGATGACTTGGATAAAAGGAAGCTGCTGGCTTTACAGTGCAGAAGAAAGTTCCTCTTATGTTTAGCTGCTAGTAAACTAATAAGTTTGAAAGTACTAATGCATCAGTGGCAGTACGTATTTATGTTATGCAACTCAGCAACAATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

340

Amino Acids

38.36

Weight (kDa)

9.18

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 139 - 302 1.3e-46 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AccBSI CCGCTC 1 cut(s) 9
AciI CCGC 2 cut(s) 7, 413
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 355
AfaI GTAC 5 cut(s) 509, 543, 798, 963, 983
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 4 cut(s) 431, 599, 842, 958
AhlI ACTAGT 2 cut(s) 59, 562
AjnI CCWGG 1 cut(s) 778
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 8 cut(s) 35, 45, 242, 368, 745, 811, 892, 935
AluI AGCT 8 cut(s) 35, 45, 242, 368, 745, 811, 892, 935
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 1 cut(s) 295
ApeKI GCWGC 4 cut(s) 110, 146, 892, 935
ApoI RAATTY 1 cut(s) 355
AsuC2I CCSGG 2 cut(s) 188, 395
AsuHPI GGTGA 2 cut(s) 370, 460
BaeI ACNNNNGTAYC 2 cut(s) 491, 524
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 4 cut(s) 97, 133, 879, 922
BccI CCATC 2 cut(s) 100, 851
BciT130I CCWGG 1 cut(s) 780
BcnI CCSGG 2 cut(s) 188, 395
BcoDI GTCTC 1 cut(s) 578
BcuI ACTAGT 2 cut(s) 59, 562
BfaI CTAG 5 cut(s) 60, 363, 563, 588, 939
BisI GCNGC 4 cut(s) 111, 147, 893, 936
BlsI GCNGC 4 cut(s) 112, 148, 894, 937
BmcAI AGTACT 1 cut(s) 963
Bme1390I CCNGG 3 cut(s) 188, 395, 780
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 3 cut(s) 188, 395, 780
BmsI GCATC 1 cut(s) 979
Bpu10I CCTNAGC 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 188, 395
BsaAI YACGTR 1 cut(s) 985
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 760, 790
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 544, 877
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 3 cut(s) 197, 234, 1017
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 4 cut(s) 97, 133, 879, 922
BsgI GTGCAG 2 cut(s) 243, 928
BsiSI CCGG 2 cut(s) 188, 394
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 4 cut(s) 28, 287, 490, 648
BspACI CCGC 2 cut(s) 7, 413
BspCNI CTCAG 3 cut(s) 198, 235, 1016
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 1 cut(s) 295
BspQI GCTCTTC 2 cut(s) 16, 81
BsrBI CCGCTC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 796
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 28, 287, 490, 648
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 1 cut(s) 906
Bst6I CTCTTC 2 cut(s) 16, 81
BstAUI TGTACA 1 cut(s) 796
BstBAI YACGTR 1 cut(s) 985
BstC8I GCNNGC 3 cut(s) 93, 813, 897
BstDEI CTNAG 4 cut(s) 206, 243, 706, 1003
BstF5I GGATG 2 cut(s) 544, 877
BstKTI GATC 4 cut(s) 31, 290, 493, 651
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 4 cut(s) 28, 287, 490, 648
BstMWI GCNNNNNNNGC 1 cut(s) 976
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 3 cut(s) 186, 393, 778
BstSNI TACGTA 1 cut(s) 985
BstV1I GCAGC 4 cut(s) 97, 133, 879, 922
BstXI CCANNNNNNTGG 1 cut(s) 625
BtsCI GGATG 2 cut(s) 544, 877
BtsIMutI CAGTG 2 cut(s) 911, 980
Cac8I GCNNGC 3 cut(s) 93, 813, 897
Csp6I GTAC 5 cut(s) 508, 542, 797, 962, 982
CviAII CATG 1 cut(s) 92
CviQI GTAC 5 cut(s) 508, 542, 797, 962, 982
DdeI CTNAG 4 cut(s) 206, 243, 706, 1003
DpnI GATC 4 cut(s) 30, 289, 492, 650
DpnII GATC 4 cut(s) 28, 287, 490, 648
Eam1104I CTCTTC 2 cut(s) 16, 81
EarI CTCTTC 2 cut(s) 16, 81
Eco105I TACGTA 1 cut(s) 985
EcoRII CCWGG 1 cut(s) 778
EcoT22I ATGCAT 1 cut(s) 972
FaeI CATG 1 cut(s) 95
FalI AAGNNNNNCTT 2 cut(s) 908, 940
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 4 cut(s) 111, 147, 893, 936
FokI GGATG 2 cut(s) 531, 884
Fsp4HI GCNGC 4 cut(s) 111, 147, 893, 936
FspBI CTAG 5 cut(s) 60, 363, 563, 588, 939
GluI GCNGC 4 cut(s) 111, 147, 893, 936
HapII CCGG 2 cut(s) 188, 394
Hin1II CATG 1 cut(s) 95
HinfI GANTC 2 cut(s) 375, 676
HpaII CCGG 2 cut(s) 188, 394
HphI GGTGA 2 cut(s) 370, 460
Hpy166II GTNNAC 3 cut(s) 124, 203, 944
Hpy188I TCNGA 5 cut(s) 57, 105, 374, 583, 653
Hpy188III TCNNGA 2 cut(s) 352, 695
Hpy8I GTNNAC 3 cut(s) 124, 203, 944
HpyAV CCTTC 5 cut(s) 400, 447, 469, 593, 759
HpyCH4III ACNGT 1 cut(s) 906
HpyCH4IV ACGT 1 cut(s) 984
HpyCH4V TGCA 9 cut(s) 4, 95, 131, 224, 641, 815, 909, 970, 999
HpyF10VI GCNNNNNNNGC 1 cut(s) 976
HpyF3I CTNAG 4 cut(s) 206, 243, 706, 1003
HpySE526I ACGT 1 cut(s) 984
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 4 cut(s) 28, 287, 490, 648
LguI GCTCTTC 2 cut(s) 16, 81
LmnI GCTCC 2 cut(s) 50, 758
Lsp1109I GCAGC 4 cut(s) 97, 133, 879, 922
LweI GCATC 1 cut(s) 979
MaeI CTAG 5 cut(s) 60, 363, 563, 588, 939
MaeII ACGT 1 cut(s) 984
MalI GATC 4 cut(s) 30, 289, 492, 650
MbiI CCGCTC 1 cut(s) 9
MboI GATC 4 cut(s) 28, 287, 490, 648
MboII GAAGA 8 cut(s) 3, 6, 98, 150, 162, 494, 666, 924
MfeI CAATTG 1 cut(s) 594
MluCI AATT 6 cut(s) 50, 355, 594, 609, 736, 823
Mph1103I ATGCAT 1 cut(s) 972
MseI TTAA 2 cut(s) 297, 536
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 2 cut(s) 188, 394
MspR9I CCNGG 3 cut(s) 188, 395, 780
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 780
MwoI GCNNNNNNNGC 1 cut(s) 976
NciI CCSGG 2 cut(s) 188, 395
NdeII GATC 4 cut(s) 28, 287, 490, 648
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 417
NsiI ATGCAT 1 cut(s) 972
NspI RCATGY 1 cut(s) 95
PaeI GCATGC 1 cut(s) 95
PciSI GCTCTTC 2 cut(s) 16, 81
PfeI GAWTC 2 cut(s) 375, 676
PkrI GCNGC 4 cut(s) 112, 148, 894, 937
Ppu21I YACGTR 1 cut(s) 985
PsiI TTATAA 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 417
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 5 cut(s) 509, 543, 798, 963, 983
RsaNI GTAC 5 cut(s) 508, 542, 797, 962, 982
SapI GCTCTTC 2 cut(s) 16, 81
SaqAI TTAA 2 cut(s) 297, 536
SatI GCNGC 4 cut(s) 111, 147, 893, 936
Sau3AI GATC 4 cut(s) 28, 287, 490, 648
ScaI AGTACT 1 cut(s) 963
ScrFI CCNGG 3 cut(s) 188, 395, 780
SfaNI GCATC 1 cut(s) 979
SnaBI TACGTA 1 cut(s) 985
SpeI ACTAGT 2 cut(s) 59, 562
SphI GCATGC 1 cut(s) 95
Sse9I AATT 6 cut(s) 50, 355, 594, 609, 736, 823
SsiI CCGC 2 cut(s) 7, 413
SspI AATATT 1 cut(s) 1014
SspMI CTAG 5 cut(s) 60, 363, 563, 588, 939
StyD4I CCNGG 3 cut(s) 186, 393, 778
TaaI ACNGT 1 cut(s) 906
TaiI ACGT 1 cut(s) 987
TaqI TCGA 2 cut(s) 31, 792
TasI AATT 6 cut(s) 50, 355, 594, 609, 736, 823
TatI WGTACW 3 cut(s) 541, 796, 961
TfiI GAWTC 2 cut(s) 375, 676
Tru1I TTAA 2 cut(s) 297, 536
Tru9I TTAA 2 cut(s) 297, 536
TscAI CASTG 2 cut(s) 911, 980
TseI GCWGC 4 cut(s) 110, 146, 892, 935
TspDTI ATGAA 3 cut(s) 150, 283, 800
TspRI CASTG 2 cut(s) 911, 980
XapI RAATTY 1 cut(s) 355
XceI RCATGY 1 cut(s) 95
XspI CTAG 5 cut(s) 60, 363, 563, 588, 939
ZrmI AGTACT 1 cut(s) 963
Zsp2I ATGCAT 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.