Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Reverse (-)

30326281 .. 30327471

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1162700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTGGGAGGATATGGTGTATCAGACTTCCGACCGTGGATAAGTTGGCTAAACAAGTTCAATGGCCTTGATCAAAAGATAGAAAAGTGTTTTAAAGGCTTGGACAATCTCTATGACAGAGTGATTGAAGAACACCTTGATCTGAAAAGGCCTAAACCGGAGCATGAAGATCTTTTTGACGTACTCCTTCGAGTTCAGAACGATCCCAGTCAAACAATCGTCCTCACTTCTGACCAAGCCCTCACTTCTGACCAAATTAAGCGTGTTCTAACCGTATGTTGCATTTTCTTTCTTCTGGCATTTGAAGATATGTTACTTAATTGGGTGCCAGGGGCTGATACTTCCACAGCCACACTGGTATGGACAATGGTTGAATTGATTCGGAACCCCCGCGCATTGAGCAAAGCACAAGACGAGGTGAGAGAAGTTTTGAAGGGAAAACAGGTGGTGGAAGAAAGTGATCTGCCCAAACTCATGCACCTAGAGTTGGTCATGAAGGAGAGTTTTAGACTACACCCACCGGTGCCATTACTAGTTCCAAGAGAAACATTACAGAGTTGCATGATAGAAGGGTTCGAAATTCCTGCCAATACAATGGTGTTTGTGCATGCAAAAATGATAAGAAATGACCCGAAATGTTGGGAGAATCCAAAAGAATTCTTGCCTGAGAGATTCATGGACAGCTCAATTGACTACAAAGGAAACCATTTTGAACTTTTACCATTTGGCGCCAGAAGGAGGGGTTGTCCTGGTATCAACTTTGGTGTGAAACTGATTGAGCTTGCGCTCGCGAATCTGCTTTATTGTTTCGACTGGGAACTACCTCACGGGGTGAGAATAGAAGACTTGGACATGGGAGAGGCTACTGGCCTTGTTGTGCCTTGGCCCGTTCGTCAGTGCGGAAACGAGATTCAGATTACAACCTCACCAAATCACACTCAGTTGAGCAAAATAAAATACAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

323

Amino Acids

37.05

Weight (kDa)

5.7

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	20 - 293	7.4e-53	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	325, 523, 728
AccII	CGCG	2 cut(s)	393, 791
AciI	CCGC	2 cut(s)	391, 900
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	579, 656
AcyI	GRCGYC	1 cut(s)	729
AdeI	CACNNNGTG	1 cut(s)	832
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	487, 738
AgeI	ACCGGT	1 cut(s)	520
AgsI	TTSAA	6 cut(s)	61, 128, 305, 374, 433, 713
AhlI	ACTAGT	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	328, 748
AluBI	AGCT	2 cut(s)	684, 781
AluI	AGCT	2 cut(s)	684, 781
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	4 cut(s)	64, 149, 868, 884
ApoI	RAATTY	2 cut(s)	579, 656
AsiGI	ACCGGT	1 cut(s)	520
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	3 cut(s)	395, 731, 787
AspS9I	GGNCC	1 cut(s)	885
AsuHPI	GGTGA	3 cut(s)	430, 844, 918
AsuII	TTCGAA	1 cut(s)	576
BanI	GGYRCC	3 cut(s)	325, 523, 728
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbsI	GAAGAC	1 cut(s)	849
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	2 cut(s)	330, 750
BclI	TGATCA	1 cut(s)	70
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	2 cut(s)	482, 533
BfoI	RGCGCY	1 cut(s)	732
BglII	AGATCT	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	330, 750
BmgT120I	GGNCC	1 cut(s)	885
BmiI	GGNNCC	4 cut(s)	327, 386, 525, 730
BmrFI	CCNGG	2 cut(s)	330, 750
BmrI	ACTGGG	2 cut(s)	201, 823
BmuI	ACTGGG	2 cut(s)	201, 823
BpiI	GAAGAC	1 cut(s)	849
Bpu14I	TTCGAA	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	729
BsaJI	CCNNGG	3 cut(s)	35, 329, 881
BsaWI	WCCGGW	2 cut(s)	157, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 738
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	4 cut(s)	207, 360, 818, 871
BseBI	CCWGG	2 cut(s)	330, 750
BseDI	CCNNGG	3 cut(s)	35, 329, 881
BseLI	CCNNNNNNNGG	2 cut(s)	487, 738
BseMII	CTCAG	2 cut(s)	657, 953
BseNI	ACTGG	4 cut(s)	207, 360, 818, 871
Bsh1236I	CGCG	2 cut(s)	393, 791
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	4 cut(s)	66, 151, 870, 886
BshNI	GGYRCC	3 cut(s)	325, 523, 728
BshTI	ACCGGT	1 cut(s)	520
BsiEI	CGRYCG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	158, 521
BslI	CCNNNNNNNGG	2 cut(s)	487, 738
BsnI	GGCC	4 cut(s)	66, 151, 870, 886
Bsp119I	TTCGAA	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	70, 139, 169, 202, 460
Bsp68I	TCGCGA	1 cut(s)	791
BspACI	CCGC	2 cut(s)	391, 900
BspANI	GGCC	4 cut(s)	66, 151, 870, 886
BspCNI	CTCAG	2 cut(s)	658, 952
BspFNI	CGCG	2 cut(s)	393, 791
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	4 cut(s)	327, 386, 525, 730
BspPI	GGATC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	576
BspT107I	GGYRCC	3 cut(s)	325, 523, 728
BsrFI	RCCGGY	1 cut(s)	520
BsrI	ACTGG	4 cut(s)	207, 360, 818, 871
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	3 cut(s)	35, 329, 881
BssMI	GATC	5 cut(s)	70, 139, 169, 202, 460
BssNI	GRCGYC	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	881
Bst2UI	CCWGG	2 cut(s)	330, 750
Bst4CI	ACNGT	2 cut(s)	36, 274
BstACI	GRCGYC	1 cut(s)	729
BstBI	TTCGAA	1 cut(s)	576
BstC8I	GCNNGC	3 cut(s)	609, 783, 789
BstDEI	CTNAG	2 cut(s)	666, 939
BstDSI	CCRYGG	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	393, 791
BstH2I	RGCGCY	1 cut(s)	732
BstHHI	GCGC	3 cut(s)	395, 731, 787
BstKTI	GATC	5 cut(s)	73, 142, 172, 205, 463
BstMBI	GATC	5 cut(s)	70, 139, 169, 202, 460
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNI	CCWGG	2 cut(s)	330, 750
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	328, 748
BstUI	CGCG	2 cut(s)	393, 791
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	4 cut(s)	66, 151, 870, 886
BtgI	CCRYGG	1 cut(s)	35
BtsIMutI	CAGTG	2 cut(s)	353, 902
BtuMI	TCGCGA	1 cut(s)	791
Cac8I	GCNNGC	3 cut(s)	609, 783, 789
CaiI	CAGNNNCTG	1 cut(s)	335
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	3 cut(s)	395, 731, 787
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	885
Csp6I	GTAC	1 cut(s)	182
CspAI	ACCGGT	1 cut(s)	520
CviAII	CATG	7 cut(s)	164, 475, 493, 562, 608, 676, 853
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	2 cut(s)	666, 939
DinI	GGCGCC	1 cut(s)	730
DpnI	GATC	5 cut(s)	72, 141, 171, 204, 462
DpnII	GATC	5 cut(s)	70, 139, 169, 202, 460
DraI	TTTAAA	1 cut(s)	94
DraIII	CACNNNGTG	1 cut(s)	832
Eco130I	CCWWGG	1 cut(s)	881
Eco147I	AGGCCT	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	328, 748
EcoT14I	CCWWGG	1 cut(s)	881
EgeI	GGCGCC	1 cut(s)	730
EheI	GGCGCC	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	881
FaeI	CATG	7 cut(s)	167, 478, 496, 565, 611, 679, 856
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	7 cut(s)	163, 474, 492, 561, 607, 675, 852
FauI	CCCGC	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	70
FspBI	CTAG	2 cut(s)	482, 533
GlaI	GCGC	3 cut(s)	394, 730, 786
HaeII	RGCGCY	1 cut(s)	732
HaeIII	GGCC	4 cut(s)	66, 151, 870, 886
HapII	CCGG	2 cut(s)	158, 521
HhaI	GCGC	3 cut(s)	395, 731, 787
Hin1I	GRCGYC	1 cut(s)	729
Hin1II	CATG	7 cut(s)	167, 478, 496, 565, 611, 679, 856
Hin6I	GCGC	3 cut(s)	393, 729, 785
HinP1I	GCGC	3 cut(s)	393, 729, 785
HinfI	GANTC	5 cut(s)	379, 646, 672, 793, 910
HpaII	CCGG	2 cut(s)	158, 521
HphI	GGTGA	3 cut(s)	430, 844, 918
Hpy188I	TCNGA	8 cut(s)	25, 32, 144, 198, 232, 250, 384, 915
Hpy188III	TCNNGA	2 cut(s)	493, 790
HpyAV	CCTTC	5 cut(s)	197, 427, 490, 563, 729
HpyCH4III	ACNGT	2 cut(s)	36, 274
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	282, 478, 561, 607, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	2 cut(s)	666, 939
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	729
Hsp92II	CATG	7 cut(s)	167, 478, 496, 565, 611, 679, 856
HspAI	GCGC	3 cut(s)	393, 729, 785
KasI	GGCGCC	1 cut(s)	728
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	70, 139, 169, 202, 460
LmnI	GCTCC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	482, 533
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	5 cut(s)	72, 141, 171, 204, 462
MboI	GATC	5 cut(s)	70, 139, 169, 202, 460
MboII	GAAGA	6 cut(s)	140, 179, 284, 317, 464, 854
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	6 cut(s)	255, 319, 374, 579, 656, 687
Mly113I	GGCGCC	1 cut(s)	729
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	233, 251, 409, 732, 834, 853, 934
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	3 cut(s)	93, 258, 318
MslI	CAYNNNNRTG	1 cut(s)	358
MspI	CCGG	2 cut(s)	158, 521
MspR9I	CCNGG	2 cut(s)	330, 750
MunI	CAATTG	1 cut(s)	687
MvaI	CCWGG	2 cut(s)	330, 750
MvnI	CGCG	2 cut(s)	393, 791
MwoI	GCNNNNNNNGC	1 cut(s)	399
NarI	GGCGCC	1 cut(s)	729
NdeII	GATC	5 cut(s)	70, 139, 169, 202, 460
NlaIII	CATG	7 cut(s)	167, 478, 496, 565, 611, 679, 856
NlaIV	GGNNCC	4 cut(s)	327, 386, 525, 730
NruI	TCGCGA	1 cut(s)	791
NspI	RCATGY	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	576
PaeI	GCATGC	1 cut(s)	611
PagI	TCATGA	1 cut(s)	492
PceI	AGGCCT	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	5 cut(s)	379, 646, 672, 793, 910
PinAI	ACCGGT	1 cut(s)	520
PluTI	GGCGCC	1 cut(s)	732
Psp6I	CCWGG	2 cut(s)	328, 748
PspGI	CCWGG	2 cut(s)	328, 748
PspN4I	GGNNCC	4 cut(s)	327, 386, 525, 730
PspPI	GGNCC	1 cut(s)	885
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	169
RruI	TCGCGA	1 cut(s)	791
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	93, 258, 318
Sau3AI	GATC	5 cut(s)	70, 139, 169, 202, 460
Sau96I	GGNCC	1 cut(s)	885
ScrFI	CCNGG	2 cut(s)	330, 750
SetI	ASST	9 cut(s)	138, 183, 420, 447, 483, 686, 783, 826, 926
SfoI	GGCGCC	1 cut(s)	730
SfuI	TTCGAA	1 cut(s)	576
SgrAI	CRCCGGYG	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	358
SpeI	ACTAGT	1 cut(s)	532
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	6 cut(s)	255, 319, 374, 579, 656, 687
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	2 cut(s)	391, 900
SspDI	GGCGCC	1 cut(s)	728
SspMI	CTAG	2 cut(s)	482, 533
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	328, 748
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	2 cut(s)	36, 274
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	190, 576, 810
TasI	AATT	6 cut(s)	255, 319, 374, 579, 656, 687
TfiI	GAWTC	5 cut(s)	379, 646, 672, 793, 910
Tru1I	TTAA	3 cut(s)	93, 258, 318
Tru9I	TTAA	3 cut(s)	93, 258, 318
TscAI	CASTG	2 cut(s)	360, 902
TspDTI	ATGAA	3 cut(s)	180, 509, 664
TspRI	CASTG	2 cut(s)	360, 902
XapI	RAATTY	2 cut(s)	579, 656
XceI	RCATGY	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	2 cut(s)	482, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.