Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Forward (+)

58992733 .. 58993392

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004396

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCTCAGGCAAAGAGGTAGACCAGCCTTGTACGTCGCGAAGAAGCTTAGCTATGACTGTGTCAATTTATCATTTGGTCCTTATGGTAAGTACTGGAGGGAGGTGAGGAAGATTGCTATCTTAGAACTACTTAGTGCAAAGAGGGTTCAAATGTTTCGTTCTGTAAGGGATGAAGAGGTTGCAATCATGATTGACTCTATAGCTCATAACTCCGAGGTTCTCATCAACCTCAGTGATGTGACACTTTGTTTGACCAACAATGTTTTGTGTCGATCAGCTTTCGGTAAAAAGTATGAGGAAGAAGGTGAGATTAGCAAGAGCAGAATTCATGAGCTGCTTGAAGAATCGATGGACCGGCCTGTTAGGGAGGTTCTGCATATCAGACTTTTTACCTTGGTTGGGATGGTTAAACAAGTTCAGTGGTCTGGAAGAAAGGGTAAACAAGTGTTTCAAAGGATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

9.6

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	28 - 116	1.4e-06	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AccII	CGCG	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	2 cut(s)	32, 92
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	149, 341, 452
AluBI	AGCT	5 cut(s)	46, 51, 203, 278, 334
AluI	AGCT	5 cut(s)	46, 51, 203, 278, 334
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AspS9I	GGNCC	2 cut(s)	77, 352
AsuHPI	GGTGA	2 cut(s)	115, 317
AvaII	GGWCC	2 cut(s)	77, 352
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	343, 397
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	335
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	336
BmcAI	AGTACT	1 cut(s)	92
Bme18I	GGWCC	2 cut(s)	77, 352
BmgT120I	GGNCC	2 cut(s)	77, 352
BpmI	CTGGAG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	5
Bpu1102I	GCTNAGC	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	213, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	213, 393
BseGI	GGATG	2 cut(s)	175, 408
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	19, 244
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	399
BsnI	GGCC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	272
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp68I	TCGCGA	1 cut(s)	38
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	2 cut(s)	18, 243
BspDI	ATCGAT	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	2 cut(s)	186, 328
BsrFI	RCCGGY	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	213, 393
BssMI	GATC	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	168
BstDEI	CTNAG	5 cut(s)	5, 47, 121, 131, 230
BstF5I	GGATG	2 cut(s)	175, 408
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	175, 408
BtsIMutI	CAGTG	2 cut(s)	238, 425
BtuMI	TCGCGA	1 cut(s)	38
CciI	TCATGA	2 cut(s)	186, 328
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	77, 352
ClaI	ATCGAT	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	31, 91
CspCI	CAANNNNNGTGG	2 cut(s)	401, 436
CviAII	CATG	2 cut(s)	187, 329
CviJI	RGCY	7 cut(s)	26, 46, 51, 203, 278, 334, 358
CviKI_1	RGCY	7 cut(s)	26, 46, 51, 203, 278, 334, 358
CviQI	GTAC	2 cut(s)	31, 91
DdeI	CTNAG	5 cut(s)	5, 47, 121, 131, 230
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	77, 352
EcoRI	GAATTC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	2 cut(s)	190, 332
FaiI	YATR	8 cut(s)	54, 84, 188, 200, 207, 294, 330, 378
FatI	CATG	2 cut(s)	186, 328
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	2 cut(s)	182, 415
Fsp4HI	GCNGC	1 cut(s)	335
GluI	GCNGC	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	355
Hin1II	CATG	2 cut(s)	190, 332
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	194, 344
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	2 cut(s)	115, 317
Hpy166II	GTNNAC	2 cut(s)	20, 440
Hpy188I	TCNGA	2 cut(s)	214, 383
Hpy188III	TCNNGA	4 cut(s)	37, 187, 329, 426
Hpy8I	GTNNAC	2 cut(s)	20, 440
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	137, 182, 376
HpyF3I	CTNAG	5 cut(s)	5, 47, 121, 131, 230
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	190, 332
Kzo9I	GATC	1 cut(s)	272
LpnPI	CCDG	5 cut(s)	36, 79, 368, 372, 411
Lsp1109I	GCAGC	1 cut(s)	321
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	274
MboI	GATC	1 cut(s)	272
MboII	GAAGA	6 cut(s)	52, 121, 185, 311, 353, 441
MluCI	AATT	2 cut(s)	64, 324
MlyI	GAGTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	408
MspI	CCGG	1 cut(s)	355
MvnI	CGCG	1 cut(s)	38
NdeII	GATC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	190, 332
NmuCI	GTSAC	1 cut(s)	238
NruI	TCGCGA	1 cut(s)	38
PagI	TCATGA	2 cut(s)	186, 328
PfeI	GAWTC	1 cut(s)	344
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	77, 352
PsyI	GACNNNGTC	1 cut(s)	59
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	2 cut(s)	32, 92
RsaNI	GTAC	2 cut(s)	31, 91
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	2 cut(s)	77, 352
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	77, 352
Sse9I	AATT	2 cut(s)	64, 324
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	271, 347
TasI	AATT	2 cut(s)	64, 324
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	2 cut(s)	238, 425
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	186, 317
TspRI	CASTG	2 cut(s)	238, 425
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	77, 352
XapI	RAATTY	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	19
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.