Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Forward (+)

59045231 .. 59045701

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCAAGAGAGGTTTTGAAAACTCATGACCTATTTTTTTCAGGCAGACCAGCCTTGTATGTTGCAAAGAAGCTTAGCTATGGATGTGTCAATCTATCGTTTGCTCCTTATGGTGAGTATTGGAGGGAGGTAAGGAAGTTTGTGATCTTGGAACTACTTGGTCCAAAGAGGGTCCAAATGTTTCAGTCTGTGAGGGATGAAGAGGTTGGAGTTATGATCGACTCAATAGCTCATAAGTGTAATGGTATTGTCAATCTCAGTGAAGTGACAGTTACCTTGGCCAACAATGTTTTGTGCTGCTGCGCTTTTGGTAAGAAGTATGATGGGGAAGGTGAAATTGGCATGAGCAGAAGTCATGAGTTGCTTAAAGAGTCGGTGGTCCTTTTGGGAGGACTTTATGTATCAGATTTTGTACCATGGATCAGCTGGATAAACAAGTTCAGTGGTCTTGAACAAAGAGTAGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

157

Amino Acids

17.63

Weight (kDa)

7.62

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 123	1.1e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	462
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	279
AfaI	GTAC	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	19, 452
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	4 cut(s)	73, 78, 230, 426
AluI	AGCT	4 cut(s)	73, 78, 230, 426
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	297, 300
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	3 cut(s)	161, 172, 379
AsuHPI	GGTGA	2 cut(s)	125, 344
AvaII	GGWCC	3 cut(s)	161, 172, 379
BalI	TGGCCA	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	284, 287
BccI	CCATC	1 cut(s)	317
BisI	GCNGC	2 cut(s)	298, 301
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	2 cut(s)	299, 302
Bme18I	GGWCC	3 cut(s)	161, 172, 379
BmgT120I	GGNCC	3 cut(s)	161, 172, 379
BmiI	GGNNCC	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	276, 416
BseDI	CCNNGG	2 cut(s)	276, 416
BseGI	GGATG	2 cut(s)	89, 202
BseMII	CTCAG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	284, 287
BshFI	GGCC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	144, 216, 420
Bsp1720I	GCTNAGC	1 cut(s)	74
Bsp19I	CCATGG	1 cut(s)	416
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	270
BspHI	TCATGA	2 cut(s)	25, 355
BspLI	GGNNCC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	276, 416
BssMI	GATC	3 cut(s)	144, 216, 420
BssT1I	CCWWGG	2 cut(s)	276, 416
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	74, 257
BstDSI	CCRYGG	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	89, 202
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	147, 219, 423
BstMBI	GATC	3 cut(s)	144, 216, 420
BstV1I	GCAGC	2 cut(s)	284, 287
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	89, 202
BtsIMutI	CAGTG	2 cut(s)	265, 448
CciI	TCATGA	2 cut(s)	25, 355
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	161, 172, 379
Csp6I	GTAC	1 cut(s)	413
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	4 cut(s)	26, 343, 356, 417
CviJI	RGCY	6 cut(s)	53, 73, 78, 230, 281, 426
CviKI_1	RGCY	6 cut(s)	53, 73, 78, 230, 281, 426
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	74, 257
DpnI	GATC	3 cut(s)	146, 218, 422
DpnII	GATC	3 cut(s)	144, 216, 420
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	276, 416
Eco47I	GGWCC	3 cut(s)	161, 172, 379
EcoT14I	CCWWGG	2 cut(s)	276, 416
ErhI	CCWWGG	2 cut(s)	276, 416
FaeI	CATG	4 cut(s)	29, 346, 359, 420
FatI	CATG	4 cut(s)	25, 342, 355, 416
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	298, 301
FokI	GGATG	2 cut(s)	96, 209
Fsp4HI	GCNGC	2 cut(s)	298, 301
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	2 cut(s)	298, 301
HaeIII	GGCC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	29, 346, 359, 420
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	221, 371
HphI	GGTGA	2 cut(s)	125, 344
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	3 cut(s)	26, 356, 449
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	74, 257
Hsp92II	CATG	4 cut(s)	29, 346, 359, 420
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	144, 216, 420
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	3 cut(s)	27, 63, 412
Lsp1109I	GCAGC	2 cut(s)	284, 287
MaeIII	GTNAC	2 cut(s)	265, 271
MalI	GATC	3 cut(s)	146, 218, 422
MboI	GATC	3 cut(s)	144, 216, 420
MboII	GAAGA	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	215, 380
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	7 cut(s)	4, 117, 121, 162, 186, 196, 383
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	426
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	3 cut(s)	144, 216, 420
NlaIII	CATG	4 cut(s)	29, 346, 359, 420
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	265
PagI	TCATGA	2 cut(s)	25, 355
PkrI	GCNGC	2 cut(s)	299, 302
PleI	GAGTC	2 cut(s)	215, 379
PpsI	GAGTC	2 cut(s)	215, 379
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	3 cut(s)	161, 172, 379
PvuII	CAGCTG	1 cut(s)	426
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	298, 301
Sau3AI	GATC	3 cut(s)	144, 216, 420
Sau96I	GGNCC	3 cut(s)	161, 172, 379
SchI	GAGTC	2 cut(s)	215, 380
SinI	GGWCC	3 cut(s)	161, 172, 379
Sse9I	AATT	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	276, 416
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	265, 448
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	297, 300
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	265, 448
VpaK11BI	GGWCC	3 cut(s)	161, 172, 379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.