FvH4_5g06590

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001697
Physical Location & Seq
Reverse (-)
3900794 .. 3903856
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06590.t1

Sequence Viewer

Length: 1521 bp
ATGAGTTCTTACCTGTCCATGTCCATGGTTCTCCCAATCTTTGTTTTTCTCATACCCTTAACTTTCTTTCTTTTGATCAAGCAAAAGAAGCACTATGCTCAACAGAAGAGGTTGCCTCCTGGTCCTAAAAGGTTACCTCTCATGGGAAACCTTCATCTTCTCTTTAATGATCTACCCCAATCTGTCCTTGAACACCTTGCTAATCAATATGGACCATTGATGTTCTTGCAATTAGGCTCAAGATCTACTTTAGTAGTCTCCTCAGCCCAAATGGCAATAGAGGTTTTCAAAACTCATGACCTCATTTTTTCAGGTAGACCAAACTTGTATTGTGTAAATAAGCTCACCTATGATTCTTTCAGCTTATCTTTTTCTCCCTATGGTGAGTACTGGAGGGAGGTTCGTAAGATTGTGATGTTGGAACTACTTGGTCCCAAGAGAGTTCAGATGTTTCGTTCTGTGAGGGATGAAGAGGTTGGAGTTATGATCGAATCTATAACTCGGAATTCTGAGGGTCTCATCAATCTAAGTGAAGCGACACTTCACTTGGCCAATAATATTGTATGTCGTTCTGCTTTTGGTAAAAAGTATGATGGTCCTGCATGTGACAACAGCAAGAGCACAATTCATGAACTGCTTGATGAAACAAGGATTTTATTAGGAAATGTCTTTCTTTCAGACTATTTACCATGGATGGGTTGGCTAAACAAGTTGAGTGGTCTTGAACAAAGGTTAGACAAGTGTTTTAAAGGTCTGGACAATATCTATGACAAAGTGATTGAGGAACACCGTGATCCTGAGAGGCCTGAACCAGAGCATGAAGATCTTGTTCATGTACTGCTTCGAGTTCAAAATGATCCAAATCAAGCAATTGCGCTCACTAATGACCAAATGAAGGGTGTCATCGCTGATATGTTTATTGGAGGGACTGATACAACCACATCGATACTGGTCTGGATTATGGCTGAGCTAATTAGGAACCCTGTGGTGTTGACGAAAGCACAAAATGAGGTGAGAGAGCTCATCAAGAACAAAGGGAAGGTTGAAGAAAGTGACCTTTCTCATCTCATGTACCTAAAGTGCGTCATCAAGGAAGGTTTCAGATTACATCCACCAGTGCCACTACTTATTCCGAGAGAAACTACACAAACTTGCACAATTGAAGGGTACGAAATCCCTGCCAAAACAATGGTGTTTGTTCATGCAAAAATGATTGGAAGGGACCCGAAATGTTGGGACAATCCAAATGCATTCTCCCCTGAAAGATTCTTGGACAGCTCGTTTGATTACAAAGGAAACCACTATGAGTTTTTACCATTTGGGGTAGGAAGGAGGCGTTGTCCCGGTATGAACTTTGCTGTGCAGGTTGTTGAGCTTGCACTTGCTAATCTTCTTTATTGTTTCCACTGGGAACTGCCTCATGGAGTGAAAAGAGAAGACTTGGACATGAAGGAAGCAGTTGGGCTTACGGTCCAGAAGAAAGTTCATTTATGTCTAGCTGCTACACCTGTATATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

507

Amino Acids

57.85

Weight (kDa)

6.97

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 39 - 496 1.6e-99 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1354
AccI GTMKAC 1 cut(s) 316
AclWI GGATC 2 cut(s) 788, 851
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 1 cut(s) 505
AfaI GTAC 4 cut(s) 389, 837, 1073, 1169
AfiI CCNNNNNNNGG 3 cut(s) 143, 695, 895
AgsI TTSAA 6 cut(s) 191, 289, 725, 851, 1046, 1163
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 7 cut(s) 343, 363, 970, 1021, 1278, 1375, 1499
AluI AGCT 7 cut(s) 343, 363, 970, 1021, 1278, 1375, 1499
Alw21I GWGCWC 2 cut(s) 623, 1023
Alw26I GTCTC 2 cut(s) 262, 521
AlwI GGATC 2 cut(s) 788, 851
AoxI GGCC 2 cut(s) 549, 803
ApeKI GCWGC 1 cut(s) 1499
ApoI RAATTY 1 cut(s) 505
ArsI GACNNNNNNTTYG 2 cut(s) 1265, 1297
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
AsuC2I CCSGG 1 cut(s) 1344
AsuHPI GGTGA 3 cut(s) 337, 395, 1024
AvaII GGWCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
BalI TGGCCA 1 cut(s) 551
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 1443
Bbv12I GWGCWC 2 cut(s) 623, 1023
BbvCI CCTCAGC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 1486
BccI CCATC 2 cut(s) 587, 688
BcgI CGANNNNNNTGC 2 cut(s) 1160, 1194
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 75
BcnI CCSGG 1 cut(s) 1344
BcoDI GTCTC 2 cut(s) 262, 521
BfaI CTAG 1 cut(s) 1496
BfuAI ACCTGC 1 cut(s) 1354
BglI GCCNNNNNGGC 1 cut(s) 272
BglII AGATCT 2 cut(s) 242, 823
BisI GCNGC 1 cut(s) 1500
BlpI GCTNAGC 1 cut(s) 966
BlsI GCNGC 1 cut(s) 1501
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 2 cut(s) 120, 1344
Bme18I GGWCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
BmgT120I GGNCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
BmiI GGNNCC 4 cut(s) 433, 980, 1223, 1224
BmrFI CCNGG 2 cut(s) 120, 1344
BmrI ACTGGG 1 cut(s) 1417
BmuI ACTGGG 1 cut(s) 1417
BpiI GAAGAC 1 cut(s) 1443
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BpmI CTGGAG 1 cut(s) 412
Bpu10I CCTNAGC 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 966
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 1344
Bsa29I ATCGAT 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 24, 689
BsaXI ACNNNNNCTCC 2 cut(s) 1324, 1354
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 695, 895
Bse1I ACTGG 4 cut(s) 395, 954, 1115, 1412
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 944
BseDI CCNNGG 2 cut(s) 24, 689
BseGI GGATG 3 cut(s) 472, 699, 1108
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 3 cut(s) 143, 695, 895
BseMII CTCAG 4 cut(s) 276, 501, 789, 957
BseNI ACTGG 4 cut(s) 395, 954, 1115, 1412
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 1486
BsgI GTGCAG 1 cut(s) 1382
BshFI GGCC 2 cut(s) 551, 805
BshVI ATCGAT 1 cut(s) 944
BsiHKAI GWGCWC 2 cut(s) 623, 1023
BsiSI CCGG 1 cut(s) 1344
BslFI GGGAC 5 cut(s) 417, 940, 1235, 1250, 1326
BslI CCNNNNNNNGG 3 cut(s) 143, 695, 895
BsmAI GTCTC 2 cut(s) 262, 521
BsmFI GGGAC 5 cut(s) 417, 940, 1235, 1250, 1326
BsmI GAATGC 1 cut(s) 1250
BsnI GGCC 2 cut(s) 551, 805
Bso31I GGTCTC 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 623, 1023
Bsp143I GATC 7 cut(s) 75, 169, 242, 486, 793, 823, 856
Bsp1720I GCTNAGC 1 cut(s) 966
Bsp19I CCATGG 2 cut(s) 24, 689
BspANI GGCC 2 cut(s) 551, 805
BspCNI CTCAG 4 cut(s) 275, 502, 790, 958
BspDI ATCGAT 1 cut(s) 944
BspHI TCATGA 2 cut(s) 295, 628
BspLI GGNNCC 4 cut(s) 433, 980, 1223, 1224
BspMI ACCTGC 1 cut(s) 1354
BspPI GGATC 2 cut(s) 788, 851
BspTNI GGTCTC 1 cut(s) 521
BsrI ACTGG 4 cut(s) 395, 954, 1115, 1412
BssECI CCNNGG 2 cut(s) 24, 689
BssMI GATC 7 cut(s) 75, 169, 242, 486, 793, 823, 856
BssT1I CCWWGG 2 cut(s) 24, 689
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 791, 1471
Bst6I CTCTTC 2 cut(s) 101, 465
BstC8I GCNNGC 1 cut(s) 1377
BstDEI CTNAG 5 cut(s) 262, 510, 527, 798, 966
BstDSI CCRYGG 2 cut(s) 24, 689
BstEII GGTNACC 1 cut(s) 132
BstF5I GGATG 3 cut(s) 472, 699, 1108
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 7 cut(s) 78, 172, 245, 489, 796, 826, 859
BstMAI GTCTC 2 cut(s) 262, 521
BstMBI GATC 7 cut(s) 75, 169, 242, 486, 793, 823, 856
BstMWI GCNNNNNNNGC 2 cut(s) 88, 272
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 606
BstPI GGTNACC 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 118, 1342
BstV1I GCAGC 1 cut(s) 1486
BstV2I GAAGAC 1 cut(s) 1443
BstX2I RGATCY 2 cut(s) 242, 823
BstXI CCANNNNNNTGG 2 cut(s) 25, 1189
BstYI RGATCY 2 cut(s) 242, 823
Bsu15I ATCGAT 1 cut(s) 944
BsuRI GGCC 2 cut(s) 551, 805
BsuTUI ATCGAT 1 cut(s) 944
BtgI CCRYGG 2 cut(s) 24, 689
BtgZI GCGATG 1 cut(s) 889
BtsCI GGATG 3 cut(s) 472, 699, 1108
BtsIMutI CAGTG 2 cut(s) 1122, 1405
BveI ACCTGC 1 cut(s) 1354
Cac8I GCNNGC 1 cut(s) 1377
CciI TCATGA 2 cut(s) 295, 628
CfoI GCGC 1 cut(s) 877
Cfr13I GGNCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
ClaI ATCGAT 1 cut(s) 944
CseI GACGC 1 cut(s) 1072
Csp6I GTAC 4 cut(s) 388, 836, 1072, 1168
CspCI CAANNNNNGTGG 2 cut(s) 697, 732
CviQI GTAC 4 cut(s) 388, 836, 1072, 1168
DdeI CTNAG 5 cut(s) 262, 510, 527, 798, 966
DpnI GATC 7 cut(s) 77, 171, 244, 488, 795, 825, 858
DpnII GATC 7 cut(s) 75, 169, 242, 486, 793, 823, 856
DraI TTTAAA 1 cut(s) 748
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 101, 465
EarI CTCTTC 2 cut(s) 101, 465
Ecl136II GAGCTC 1 cut(s) 1021
Eco130I CCWWGG 2 cut(s) 24, 689
Eco147I AGGCCT 1 cut(s) 805
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 521
Eco47I GGWCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
Eco53kI GAGCTC 1 cut(s) 1021
Eco91I GGTNACC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 1021
EcoO109I RGGNCCY 1 cut(s) 1222
EcoO65I GGTNACC 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 24, 689
EcoT22I ATGCAT 1 cut(s) 1252
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 2 cut(s) 24, 689
FalI AAGNNNNNCTT 4 cut(s) 232, 264, 525, 557
FaqI GGGAC 5 cut(s) 417, 940, 1235, 1250, 1326
FbaI TGATCA 1 cut(s) 75
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 1500
FokI GGATG 3 cut(s) 479, 706, 1095
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 1 cut(s) 1500
FspBI CTAG 1 cut(s) 1496
GlaI GCGC 1 cut(s) 876
GluI GCNGC 1 cut(s) 1500
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 2 cut(s) 551, 805
HapII CCGG 1 cut(s) 1344
HgaI GACGC 1 cut(s) 1072
HhaI GCGC 1 cut(s) 877
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HincII GTYRAC 1 cut(s) 993
HindII GTYRAC 1 cut(s) 993
HinfI GANTC 3 cut(s) 353, 491, 1266
HpaII CCGG 1 cut(s) 1344
HphI GGTGA 3 cut(s) 337, 395, 1024
Hpy166II GTNNAC 2 cut(s) 317, 993
Hpy188I TCNGA 6 cut(s) 447, 504, 511, 679, 1103, 1134
Hpy188III TCNNGA 9 cut(s) 240, 296, 629, 722, 755, 797, 955, 1027, 1474
Hpy8I GTNNAC 2 cut(s) 317, 993
HpyAV CCTTC 8 cut(s) 161, 889, 1033, 1088, 1157, 1212, 1323, 1444
HpyCH4III ACNGT 2 cut(s) 791, 1471
HpyCH4V TGCA 7 cut(s) 229, 602, 1155, 1205, 1250, 1363, 1379
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 272
HpyF3I CTNAG 5 cut(s) 262, 510, 527, 798, 966
HspAI GCGC 1 cut(s) 875
KflI GGGWCCC 1 cut(s) 1222
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 7 cut(s) 75, 169, 242, 486, 793, 823, 856
Lsp1109I GCAGC 1 cut(s) 1486
MaeI CTAG 1 cut(s) 1496
MaeIII GTNAC 3 cut(s) 132, 605, 1052
MalI GATC 7 cut(s) 77, 171, 244, 488, 795, 825, 858
MboI GATC 7 cut(s) 75, 169, 242, 486, 793, 823, 856
MboII GAAGA 8 cut(s) 118, 149, 482, 833, 1058, 1382, 1448, 1489
MfeI CAATTG 2 cut(s) 870, 1158
MflI RGATCY 2 cut(s) 242, 823
MhlI GDGCHC 2 cut(s) 623, 1023
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 6 cut(s) 230, 505, 624, 870, 972, 1158
MluNI TGGCCA 1 cut(s) 551
MmeI TCCRAC 2 cut(s) 399, 457
Mox20I TGGCCA 1 cut(s) 551
Mph1103I ATGCAT 1 cut(s) 1252
MscI TGGCCA 1 cut(s) 551
MseI TTAA 4 cut(s) 59, 165, 747, 1519
MslI CAYNNNNRTG 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 1 cut(s) 1344
MspR9I CCNGG 2 cut(s) 120, 1344
MunI CAATTG 2 cut(s) 870, 1158
Mva1269I GAATGC 1 cut(s) 1250
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 88, 272
NciI CCSGG 1 cut(s) 1344
NcoI CCATGG 2 cut(s) 24, 689
NdeII GATC 7 cut(s) 75, 169, 242, 486, 793, 823, 856
NlaIV GGNNCC 4 cut(s) 433, 980, 1223, 1224
NmuCI GTSAC 2 cut(s) 605, 1052
NsiI ATGCAT 1 cut(s) 1252
NspI RCATGY 1 cut(s) 606
PagI TCATGA 2 cut(s) 295, 628
PceI AGGCCT 1 cut(s) 805
PctI GAATGC 1 cut(s) 1250
PfeI GAWTC 3 cut(s) 353, 491, 1266
PkrI GCNGC 1 cut(s) 1501
PpuMI RGGWCCY 1 cut(s) 1222
Psp124BI GAGCTC 1 cut(s) 1023
Psp5II RGGWCCY 1 cut(s) 1222
Psp6I CCWGG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 4 cut(s) 433, 980, 1223, 1224
PspPI GGNCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
PspPPI RGGWCCY 1 cut(s) 1222
PsuI RGATCY 2 cut(s) 242, 823
RsaI GTAC 4 cut(s) 389, 837, 1073, 1169
RsaNI GTAC 4 cut(s) 388, 836, 1072, 1168
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 1023
SaqAI TTAA 4 cut(s) 59, 165, 747, 1519
SatI GCNGC 1 cut(s) 1500
Sau3AI GATC 7 cut(s) 75, 169, 242, 486, 793, 823, 856
Sau96I GGNCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
ScaI AGTACT 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 120, 1344
SduI GDGCHC 2 cut(s) 623, 1023
SinI GGWCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 6 cut(s) 230, 505, 624, 870, 972, 1158
SseBI AGGCCT 1 cut(s) 805
SspI AATATT 1 cut(s) 559
SspMI CTAG 1 cut(s) 1496
SstI GAGCTC 1 cut(s) 1023
StuI AGGCCT 1 cut(s) 805
StyD4I CCNGG 2 cut(s) 118, 1342
StyI CCWWGG 2 cut(s) 24, 689
TaaI ACNGT 2 cut(s) 791, 1471
TaqI TCGA 3 cut(s) 489, 844, 944
TasI AATT 6 cut(s) 230, 505, 624, 870, 972, 1158
TatI WGTACW 2 cut(s) 387, 835
TfiI GAWTC 3 cut(s) 353, 491, 1266
Tru1I TTAA 4 cut(s) 59, 165, 747, 1519
Tru9I TTAA 4 cut(s) 59, 165, 747, 1519
TscAI CASTG 2 cut(s) 1122, 1412
TseFI GTSAC 2 cut(s) 605, 1052
TseI GCWGC 1 cut(s) 1499
Tsp45I GTSAC 2 cut(s) 605, 1052
TspRI CASTG 2 cut(s) 1122, 1412
VpaK11BI GGWCC 6 cut(s) 122, 212, 431, 596, 1222, 1471
XapI RAATTY 1 cut(s) 505
XceI RCATGY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 2 cut(s) 696, 946
XmiI GTMKAC 1 cut(s) 316
XspI CTAG 1 cut(s) 1496
ZrmI AGTACT 1 cut(s) 389
Zsp2I ATGCAT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.