Rw7G010540

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
9810013 .. 9813110
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010540.1

Sequence Viewer

Length: 1521 bp
ATGAGTTCTTACTTATCCTTGTCCATGGTGCTCCTACTCTTTATTTTTCTTATACCCTTTACTTTCTTGCTCTTGATGAAGCGAAGGAAGCAAAATGTTCAAGCAAAGAGATTGCCTCCTGGTCCTAGAAGGCTACCTGTAATTGGGAACCTTCACCATCTTTCTGATGATTTACCTCATTGTGCCTTTGAACACCTTTCCAGTCATTACGGACCGATCATGTTCTTGCAATTAGGCTCAAGATCTACTTTAGTAGTCTCTTCAGCCGAAATGACTAGAGAGGTTTTCAAAACTCATGACCTCATTTTTTCAGGTAGACCAGATTTCTTGTATGTTGCAAAGAGGCTTAGCTATGACTCCAGTGTATCATTTTCTCCCATTGGTAAGTATTGGAGGGAGGTTAGAAAGATTGTGATCTTGGAACTACTTAGTGCAAAGCGGATTCAAATGTTTCGTTCTGTGAGAGACGAAGAGGTTGGACATATGATTGATGACATAGCCCATACTTCTAATGGTCTCATCAATCTCAATGAACTGACACATTTCTTATCCAACAGAGTCTTGTGCCGCTCGGCTTTTGGCAAAAAGTATGATGGTGCTGGAGGTGTTATTAGCAAGAACAGAATTTTTGAATTGCTTGAAGAGGCAATGAACTTGTTGGGAGGGTTCTGCATATCGGATTTTCTGCCATGGATGGGTTGGCTAAACAAGTTCAATGGTCTTGAAAAAAGGGTAGACAAGTGTTTTAAAGGGTTGGACAGTTTCTATGACAAAGTGATTGAGGAACACCTTGACCCAAAAAGGCCTACTCCGGAGCATGAAGATCTTGTCGATGTGCTACTTCGAGTTCAGAAAGATCCAAGTCAAGCAATAGCACTTACTAACGACCAAATCAAGGGTGTCATCACTGACATATTTATTGCAGGGACTGACACATCCTCAGCCACAGTGGTTTGGACAATGGCTGAGCTGATCAGGAATCCCTTAGTGATGAGGAAAGCGCAAGATGAGGTGAGAGGAGTGGTCAAGGCACAAGGGAAGGTGGAAGAAAGTGATCTTTCTGAACTCATGTACCTAAAGTTAGTTATCAAAGAAAGTTTTAGACTACATCCGCCAGTGCCATCACTAGTTCCAAGAGTAACTACCGAGAGTTGCACAATTGAAGGGTACGAAATTCCTGCCAAAACAATGGTGTTTATTCTTGCAAAAATGATTGGAAGGGACCCAAAATGTTGGGAGAATCCAAATGAATTCTTCCCTGAAAGATTCTTGGACAGCTCGATTGACTACAAGGGAAACCATTTTGAGCTTTTGCCATTTGGGGCAGGAAGGAGGGGTTGTCCTGGTATGAACTTTGCTATGCAGCTAGTTGAGCTTACACTAGCTAATCTGCTGTATCGTTTTGACTGGGAATTGCCTAATGGGATGAAAAGAGAAGACTTGAACATGGAAGAAGCTGCTGGGATTACAGTGCAGAACAAAGTTCCTTTATATCTAGCAGCTACACCAGTACATCTATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

506

Amino Acids

57.61

Weight (kDa)

7.23

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 39 - 491 1.4e-98 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 570
AccI GTMKAC 2 cut(s) 316, 735
AccIII TCCGGA 1 cut(s) 811
AciI CCGC 3 cut(s) 439, 568, 1112
AclWI GGATC 1 cut(s) 851
AcsI RAATTY 3 cut(s) 624, 1173, 1250
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 3 cut(s) 1073, 1169, 1512
AfiI CCNNNNNNNGG 3 cut(s) 143, 695, 895
AhlI ACTAGT 1 cut(s) 1126
AjnI CCWGG 2 cut(s) 118, 1342
AluBI AGCT 9 cut(s) 351, 970, 1278, 1309, 1366, 1375, 1385, 1457, 1502
AluI AGCT 9 cut(s) 351, 970, 1278, 1309, 1366, 1375, 1385, 1457, 1502
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 3 cut(s) 262, 459, 521
AlwI GGATC 1 cut(s) 851
AlwNI CAGNNNCTG 1 cut(s) 929
Aor13HI TCCGGA 1 cut(s) 811
AoxI GGCC 1 cut(s) 803
ApeKI GCWGC 3 cut(s) 1363, 1457, 1499
ApoI RAATTY 3 cut(s) 624, 1173, 1250
AspLEI GCGC 1 cut(s) 1003
AspS9I GGNCC 3 cut(s) 122, 212, 1222
AsuHPI GGTGA 2 cut(s) 146, 1024
AvaII GGWCC 3 cut(s) 122, 212, 1222
BaeI ACNNNNGTAYC 2 cut(s) 1055, 1088
BbsI GAAGAC 1 cut(s) 1443
Bbv12I GWGCWC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 940
BbvI GCAGC 3 cut(s) 1375, 1444, 1511
BccI CCATC 4 cut(s) 165, 587, 688, 1129
BcgI CGANNNNNNTGC 2 cut(s) 1160, 1194
BciT130I CCWGG 2 cut(s) 120, 1344
BclI TGATCA 1 cut(s) 972
BcoDI GTCTC 3 cut(s) 262, 459, 521
BcuI ACTAGT 1 cut(s) 1126
BfaI CTAG 6 cut(s) 126, 276, 1127, 1367, 1382, 1496
BglII AGATCT 2 cut(s) 242, 823
BisI GCNGC 4 cut(s) 568, 1364, 1458, 1500
BlpI GCTNAGC 2 cut(s) 347, 966
BlsI GCNGC 4 cut(s) 569, 1365, 1459, 1501
Bme1390I CCNGG 2 cut(s) 120, 1344
Bme18I GGWCC 3 cut(s) 122, 212, 1222
BmgT120I GGNCC 3 cut(s) 122, 212, 1222
BmiI GGNNCC 3 cut(s) 149, 1223, 1224
BmrFI CCNGG 2 cut(s) 120, 1344
BmrI ACTGGG 1 cut(s) 1417
BmuI ACTGGG 1 cut(s) 1417
BpiI GAAGAC 1 cut(s) 1443
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BpmI CTGGAG 2 cut(s) 343, 621
Bpu10I CCTNAGC 1 cut(s) 940
Bpu1102I GCTNAGC 2 cut(s) 347, 966
BpuEI CTTGAG 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 24, 689
BsaWI WCCGGW 1 cut(s) 811
BsaXI ACNNNNNCTCC 2 cut(s) 1324, 1354
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 695, 895
Bse1I ACTGG 5 cut(s) 201, 360, 1115, 1412, 1508
Bse3DI GCAATG 1 cut(s) 654
Bse8I GATNNNNATC 1 cut(s) 413
BseAI TCCGGA 1 cut(s) 811
BseBI CCWGG 2 cut(s) 120, 1344
BseDI CCNNGG 2 cut(s) 24, 689
BseGI GGATG 4 cut(s) 699, 935, 1108, 1431
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 3 cut(s) 143, 695, 895
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 2 cut(s) 954, 957
BseNI ACTGG 5 cut(s) 201, 360, 1115, 1412, 1508
BseRI GAGGAG 1 cut(s) 1032
BseXI GCAGC 3 cut(s) 1375, 1444, 1511
BseYI CCCAGC 1 cut(s) 1460
BsgI GTGCAG 1 cut(s) 1493
BshFI GGCC 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 812
BslFI GGGAC 2 cut(s) 940, 1235
BslI CCNNNNNNNGG 3 cut(s) 143, 695, 895
BsmAI GTCTC 3 cut(s) 262, 459, 521
BsmBI CGTCTC 1 cut(s) 459
BsmFI GGGAC 2 cut(s) 940, 1235
BsnI GGCC 1 cut(s) 805
Bso31I GGTCTC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 33
Bsp13I TCCGGA 1 cut(s) 811
Bsp143I GATC 7 cut(s) 216, 242, 414, 823, 856, 972, 1054
Bsp1720I GCTNAGC 2 cut(s) 347, 966
Bsp19I CCATGG 2 cut(s) 24, 689
BspACI CCGC 3 cut(s) 439, 568, 1112
BspANI GGCC 1 cut(s) 805
BspCNI CTCAG 2 cut(s) 953, 958
BspEI TCCGGA 1 cut(s) 811
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 149, 1223, 1224
BspPI GGATC 1 cut(s) 851
BspTNI GGTCTC 1 cut(s) 521
BsrBI CCGCTC 1 cut(s) 570
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 5 cut(s) 201, 360, 1115, 1412, 1508
BssECI CCNNGG 2 cut(s) 24, 689
BssMI GATC 7 cut(s) 216, 242, 414, 823, 856, 972, 1054
BssT1I CCWWGG 2 cut(s) 24, 689
Bst2UI CCWGG 2 cut(s) 120, 1344
Bst4CI ACNGT 3 cut(s) 761, 949, 1471
Bst6I CTCTTC 3 cut(s) 265, 465, 636
BstDEI CTNAG 5 cut(s) 347, 428, 940, 966, 985
BstDSI CCRYGG 2 cut(s) 24, 689
BstF5I GGATG 4 cut(s) 699, 935, 1108, 1431
BstHHI GCGC 1 cut(s) 1003
BstKTI GATC 7 cut(s) 219, 245, 417, 826, 859, 975, 1057
BstMAI GTCTC 3 cut(s) 262, 459, 521
BstMBI GATC 7 cut(s) 216, 242, 414, 823, 856, 972, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 88, 1372
BstNI CCWGG 2 cut(s) 120, 1344
BstSCI CCNGG 2 cut(s) 118, 1342
BstV1I GCAGC 3 cut(s) 1375, 1444, 1511
BstV2I GAAGAC 1 cut(s) 1443
BstX2I RGATCY 3 cut(s) 242, 823, 856
BstXI CCANNNNNNTGG 2 cut(s) 1189, 1233
BstYI RGATCY 3 cut(s) 242, 823, 856
BsuRI GGCC 1 cut(s) 805
BtgI CCRYGG 2 cut(s) 24, 689
BtsCI GGATG 4 cut(s) 699, 935, 1108, 1431
BtsIMutI CAGTG 5 cut(s) 367, 906, 954, 1122, 1476
CaiI CAGNNNCTG 1 cut(s) 929
CciI TCATGA 1 cut(s) 295
CfoI GCGC 1 cut(s) 1003
Cfr13I GGNCC 3 cut(s) 122, 212, 1222
CpoI CGGWCCG 1 cut(s) 212
Csp6I GTAC 3 cut(s) 1072, 1168, 1511
CspI CGGWCCG 1 cut(s) 212
CviAII CATG 7 cut(s) 25, 220, 296, 690, 818, 1069, 1447
CviQI GTAC 3 cut(s) 1072, 1168, 1511
DdeI CTNAG 5 cut(s) 347, 428, 940, 966, 985
DpnI GATC 7 cut(s) 218, 244, 416, 825, 858, 974, 1056
DpnII GATC 7 cut(s) 216, 242, 414, 823, 856, 972, 1054
DraI TTTAAA 1 cut(s) 748
Eam1104I CTCTTC 3 cut(s) 265, 465, 636
EarI CTCTTC 3 cut(s) 265, 465, 636
EciI GGCGGA 1 cut(s) 1101
Eco130I CCWWGG 2 cut(s) 24, 689
Eco147I AGGCCT 1 cut(s) 805
Eco31I GGTCTC 1 cut(s) 521
Eco47I GGWCC 3 cut(s) 122, 212, 1222
Eco57I CTGAAG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 1222
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 2 cut(s) 118, 1342
EcoT14I CCWWGG 2 cut(s) 24, 689
ErhI CCWWGG 2 cut(s) 24, 689
Esp3I CGTCTC 1 cut(s) 459
FaeI CATG 7 cut(s) 28, 223, 299, 693, 821, 1072, 1450
FalI AAGNNNNNCTT 2 cut(s) 232, 264
FaqI GGGAC 2 cut(s) 940, 1235
FatI CATG 7 cut(s) 24, 219, 295, 689, 817, 1068, 1446
FauNDI CATATG 1 cut(s) 483
FbaI TGATCA 1 cut(s) 972
FblI GTMKAC 2 cut(s) 316, 735
Fnu4HI GCNGC 4 cut(s) 568, 1364, 1458, 1500
FokI GGATG 4 cut(s) 706, 922, 1095, 1438
Fsp4HI GCNGC 4 cut(s) 568, 1364, 1458, 1500
FspBI CTAG 6 cut(s) 126, 276, 1127, 1367, 1382, 1496
GlaI GCGC 1 cut(s) 1002
GluI GCNGC 4 cut(s) 568, 1364, 1458, 1500
GsaI CCCAGC 1 cut(s) 1464
GsuI CTGGAG 2 cut(s) 343, 621
HaeIII GGCC 1 cut(s) 805
HapII CCGG 1 cut(s) 812
HhaI GCGC 1 cut(s) 1003
Hin1II CATG 7 cut(s) 28, 223, 299, 693, 821, 1072, 1450
Hin6I GCGC 1 cut(s) 1001
HinP1I GCGC 1 cut(s) 1001
HinfI GANTC 6 cut(s) 356, 442, 558, 979, 1240, 1266
HpaII CCGG 1 cut(s) 812
HphI GGTGA 2 cut(s) 146, 1024
Hpy166II GTNNAC 2 cut(s) 317, 736
Hpy188I TCNGA 4 cut(s) 166, 679, 852, 1063
Hpy188III TCNNGA 6 cut(s) 73, 240, 296, 722, 812, 976
Hpy8I GTNNAC 2 cut(s) 317, 736
HpyAV CCTTC 7 cut(s) 78, 123, 161, 1033, 1157, 1212, 1323
HpyCH4III ACNGT 3 cut(s) 761, 949, 1471
HpyCH4V TGCA 9 cut(s) 229, 338, 434, 672, 923, 1155, 1205, 1363, 1474
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 1372
HpyF3I CTNAG 5 cut(s) 347, 428, 940, 966, 985
Hsp92II CATG 7 cut(s) 28, 223, 299, 693, 821, 1072, 1450
HspAI GCGC 1 cut(s) 1001
KflI GGGWCCC 1 cut(s) 1222
Kpn2I TCCGGA 1 cut(s) 811
Ksp22I TGATCA 1 cut(s) 972
Kzo9I GATC 7 cut(s) 216, 242, 414, 823, 856, 972, 1054
LmnI GCTCC 2 cut(s) 36, 814
Lsp1109I GCAGC 3 cut(s) 1375, 1444, 1511
MaeI CTAG 6 cut(s) 126, 276, 1127, 1367, 1382, 1496
MaeIII GTNAC 1 cut(s) 1138
MalI GATC 7 cut(s) 218, 244, 416, 825, 858, 974, 1056
MbiI CCGCTC 1 cut(s) 570
MboI GATC 7 cut(s) 216, 242, 414, 823, 856, 972, 1054
MboII GAAGA 8 cut(s) 252, 482, 653, 833, 1058, 1246, 1448, 1463
MfeI CAATTG 1 cut(s) 1158
MflI RGATCY 3 cut(s) 242, 823, 856
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 8 cut(s) 141, 230, 624, 632, 1158, 1173, 1250, 1412
MlyI GAGTC 2 cut(s) 350, 567
MmeI TCCRAC 3 cut(s) 457, 576, 735
MroI TCCGGA 1 cut(s) 811
MseI TTAA 1 cut(s) 747
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 2 cut(s) 120, 1344
MunI CAATTG 1 cut(s) 1158
MvaI CCWGG 2 cut(s) 120, 1344
MwoI GCNNNNNNNGC 2 cut(s) 88, 1372
NcoI CCATGG 2 cut(s) 24, 689
NdeI CATATG 1 cut(s) 483
NdeII GATC 7 cut(s) 216, 242, 414, 823, 856, 972, 1054
NlaIII CATG 7 cut(s) 28, 223, 299, 693, 821, 1072, 1450
NlaIV GGNNCC 3 cut(s) 149, 1223, 1224
NmeAIII GCCGAG 1 cut(s) 551
PagI TCATGA 1 cut(s) 295
PceI AGGCCT 1 cut(s) 805
PfeI GAWTC 4 cut(s) 442, 979, 1240, 1266
PkrI GCNGC 4 cut(s) 569, 1365, 1459, 1501
PleI GAGTC 2 cut(s) 350, 566
PpsI GAGTC 2 cut(s) 350, 566
PpuMI RGGWCCY 1 cut(s) 1222
Psp5II RGGWCCY 1 cut(s) 1222
Psp6I CCWGG 2 cut(s) 118, 1342
PspFI CCCAGC 1 cut(s) 1460
PspGI CCWGG 2 cut(s) 118, 1342
PspN4I GGNNCC 3 cut(s) 149, 1223, 1224
PspPI GGNCC 3 cut(s) 122, 212, 1222
PspPPI RGGWCCY 1 cut(s) 1222
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 3 cut(s) 242, 823, 856
RsaI GTAC 3 cut(s) 1073, 1169, 1512
RsaNI GTAC 3 cut(s) 1072, 1168, 1511
Rsr2I CGGWCCG 1 cut(s) 212
RsrII CGGWCCG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 747
SatI GCNGC 4 cut(s) 568, 1364, 1458, 1500
Sau3AI GATC 7 cut(s) 216, 242, 414, 823, 856, 972, 1054
Sau96I GGNCC 3 cut(s) 122, 212, 1222
SchI GAGTC 2 cut(s) 350, 567
ScrFI CCNGG 2 cut(s) 120, 1344
SduI GDGCHC 1 cut(s) 33
SinI GGWCC 3 cut(s) 122, 212, 1222
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SpeI ACTAGT 1 cut(s) 1126
Sse9I AATT 8 cut(s) 141, 230, 624, 632, 1158, 1173, 1250, 1412
SseBI AGGCCT 1 cut(s) 805
SsiI CCGC 3 cut(s) 439, 568, 1112
SspMI CTAG 6 cut(s) 126, 276, 1127, 1367, 1382, 1496
StuI AGGCCT 1 cut(s) 805
StyD4I CCNGG 2 cut(s) 118, 1342
StyI CCWWGG 2 cut(s) 24, 689
TaaI ACNGT 3 cut(s) 761, 949, 1471
TaqI TCGA 3 cut(s) 831, 844, 1280
TaqII GACCGA 1 cut(s) 229
TasI AATT 8 cut(s) 141, 230, 624, 632, 1158, 1173, 1250, 1412
TatI WGTACW 1 cut(s) 1510
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 4 cut(s) 442, 979, 1240, 1266
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TscAI CASTG 5 cut(s) 367, 913, 954, 1122, 1476
TseI GCWGC 3 cut(s) 1363, 1457, 1499
TspDTI ATGAA 7 cut(s) 92, 546, 665, 834, 1263, 1364, 1442
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 5 cut(s) 367, 913, 954, 1122, 1476
VpaK11BI GGWCC 3 cut(s) 122, 212, 1222
XapI RAATTY 3 cut(s) 624, 1173, 1250
XcmI CCANNNNNNNNNTGG 2 cut(s) 509, 696
XmiI GTMKAC 2 cut(s) 316, 735
XspI CTAG 6 cut(s) 126, 276, 1127, 1367, 1382, 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.