Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Reverse (-)

89021935 .. 89022294

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG665000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAAGAGAGGTTTTGAAAACTTATGACCTATTTTTTTCAGGCAGACCAGCCTTGTATGTTGCAAAGAAGCTTGGCTATGGATGTGTCAATCTATCGTTTGCTCCTTATGGTGAGTATTGGAGGGAGGTAAGGAAGTTTGTGATCTTGGAACTACTTGGTCCAAAGAGGGTCCAAATGTTTCAATTTGTGAGAGATGAAGAGGTTGGAGTTATGATCGACTCAATAGCTCATAAGTGTTATGGTATTGTCAATCTCAGTGAAGTGACAGTTATCTTGGCCAACAATGTTTTGTGTCGCTGCGCTTTTGGTAACAAGTATGATGGGGAAGGTGAAATTGGCATGAGCAGAAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

119

Amino Acids

13.54

Weight (kDa)

8.36

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 108	8.3e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	19, 185
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	2 cut(s)	73, 230
AluI	AGCT	2 cut(s)	73, 230
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	161, 172
AsuHPI	GGTGA	2 cut(s)	125, 344
AvaII	GGWCC	2 cut(s)	161, 172
BalI	TGGCCA	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	317
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme18I	GGWCC	2 cut(s)	161, 172
BmgT120I	GGNCC	2 cut(s)	161, 172
BmiI	GGNNCC	1 cut(s)	173
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	144, 216
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	173
BssMI	GATC	2 cut(s)	144, 216
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	147, 219
BstMBI	GATC	2 cut(s)	144, 216
BstV1I	GCAGC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	265
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	161, 172
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	5 cut(s)	53, 73, 78, 230, 281
CviKI_1	RGCY	5 cut(s)	53, 73, 78, 230, 281
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	2 cut(s)	146, 218
DpnII	GATC	2 cut(s)	144, 216
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	161, 172
FaeI	CATG	1 cut(s)	346
FaiI	YATR	9 cut(s)	27, 60, 81, 111, 215, 234, 243, 321, 344
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	301
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	125, 344
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	144, 216
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	2 cut(s)	27, 63
Lsp1109I	GCAGC	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	265, 311
MalI	GATC	2 cut(s)	146, 218
MboI	GATC	2 cut(s)	144, 216
MboII	GAAGA	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	2 cut(s)	185, 336
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	4, 117, 121, 162, 196
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	281
NdeII	GATC	2 cut(s)	144, 216
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	2 cut(s)	161, 172
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	2 cut(s)	144, 216
Sau96I	GGNCC	2 cut(s)	161, 172
SchI	GAGTC	1 cut(s)	215
SetI	ASST	7 cut(s)	15, 33, 75, 132, 207, 232, 334
SinI	GGWCC	2 cut(s)	161, 172
Sse9I	AATT	2 cut(s)	185, 336
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	185, 336
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	2 cut(s)	161, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.