Rroxscaffold_3G00263300

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
57257401 .. 57257810
410 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00263300.1

Sequence Viewer

Length: 357 bp
ATGGACAATGGCCGAGCTTATGCGGAACCCTCTCTGTGTTTGAAGAAAGCACAAAATGAGGTGAGAAGAGTGGTAAAGGGAAAAGCGAAGGTGGAAGAAAGTGATCTTTCTGAACTAATGTACCTAAAAGAAACCTCCGAGACTAGCACAATTGAAGGGTATGTAATTCCAGCCAAAACAATGGTGTTTGTCCTTGCAAAAATGATAGGAAGAGACCCTAAATGTTGGGAGAATCCAAACGAGTTCTTTCCTGGAAGATTCTTAGACAGCGGGATTGATTACAAAGGAAAGAATTATGAGCTTTTACCATTTGGGGCAGGAAGGAGGGGTTGTCCTGGAATGAACTTCGGTGTATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.23

Weight (kDa)

8.42

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 44 - 117 6.4e-23 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 270
AcoI YGGCCR 1 cut(s) 10
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 2 cut(s) 43, 155
AjnI CCWGG 2 cut(s) 250, 334
AluBI AGCT 2 cut(s) 17, 301
AluI AGCT 2 cut(s) 17, 301
Alw26I GTCTC 2 cut(s) 134, 207
AoxI GGCC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 73
BaeI ACNNNNGTAYC 2 cut(s) 104, 137
BciT130I CCWGG 2 cut(s) 252, 336
BcoDI GTCTC 2 cut(s) 134, 207
BfaI CTAG 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 252, 336
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 252, 336
BsaI GGTCTC 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
BseBI CCWGG 2 cut(s) 252, 336
BshFI GGCC 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 134, 207
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 23, 270
BspANI GGCC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 207
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 252, 336
Bst6I CTCTTC 2 cut(s) 61, 205
BstDEI CTNAG 1 cut(s) 262
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 2 cut(s) 134, 207
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 252, 336
BstSCI CCNGG 2 cut(s) 250, 334
BstXI CCANNNNNNTGG 1 cut(s) 181
BsuRI GGCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 4 cut(s) 12, 17, 173, 301
CviKI_1 RGCY 4 cut(s) 12, 17, 173, 301
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 262
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 61, 205
EarI CTCTTC 2 cut(s) 61, 205
Eco31I GGTCTC 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 250, 334
FaiI YATR 4 cut(s) 21, 162, 297, 355
FauI CCCGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 12
HinfI GANTC 2 cut(s) 232, 258
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 112, 139
HpyAV CCTTC 3 cut(s) 82, 149, 315
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 183, 237, 264, 303, 321, 348
MaeI CTAG 1 cut(s) 144
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 5 cut(s) 55, 78, 107, 222, 267
MfeI CAATTG 1 cut(s) 150
MluCI AATT 3 cut(s) 150, 165, 292
MnlI CCTC 4 cut(s) 40, 52, 145, 318
MspA1I CMGCKG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 252, 336
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 2 cut(s) 252, 336
NdeII GATC 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 27
NmeAIII GCCGAG 1 cut(s) 38
PfeI GAWTC 2 cut(s) 232, 258
PfoI TCCNGGA 2 cut(s) 250, 334
Psp6I CCWGG 2 cut(s) 250, 334
PspGI CCWGG 2 cut(s) 250, 334
PspN4I GGNNCC 1 cut(s) 27
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
Sau3AI GATC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 252, 336
SetI ASST 6 cut(s) 19, 63, 93, 126, 137, 303
Sse9I AATT 3 cut(s) 150, 165, 292
SsiI CCGC 2 cut(s) 23, 270
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 250, 334
TasI AATT 3 cut(s) 150, 165, 292
TfiI GAWTC 2 cut(s) 232, 258
TspDTI ATGAA 1 cut(s) 356
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.