Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Reverse (-)

10696372 .. 10699646

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG127000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATTGATGACATAGCCCATACTTCTAATGGTCTCATCAATCTCAATGAACTGACACATTTCTTATCCAACAGAGTCTTGTGCCGCTCGGCTTTTGGCAAAAAGTATGATGGTGCTGGAGGTGTTATTAGCAAGAACAGAATTTTTGAATTGCTTGAAGAGGCAATGAACTTGTTGGGAGGGTTCTGCATATCGGATTTTCTGCCATGGATGGGTTGGCTAAACAAGTTCAATGGTCTTGAAAAAAGGGTAGACAAGTGTTTTAAAGGGTTGGACAGTTTCTATGACAAAGTGATTGAGGAACACCTTGACCCAAAAAGGCCTACTCCGGAGCATGAAGATCTTGTCGATGTGCTACTTCGAGTTCAGAAAGATCCAAGTCAAGCAATAGCACTTACTAACGACCAAATCAAGGGTGTCATCACTGACATATTTATTGCAGGGACTGACACATCCTCAGCCACAGTGGTTTGGACAATGGCTGAGCTGATCAGGAATCCCTTAGTGATGAGGAAAGCGCAAGATGAGGTGAGAGGAGTGGTCAAGGCACAAGGGAAGGTGGAAGAAAGTGATCTTTCTGAACTCATGTACCTAAAGTTAGTTATCAAAGAAAGTTTTAGACTACATCCGCCAGTGCCATCACTAGTTCCAAGAGTAACTACCGAGAGTTGCACAATTGAAGGGTACGAAATTCCTGCCAAAACAATGGTGTTTATTCTTGCAAAAATGATTGGAAGGGACCCAAAATGTTGGGAGAATCCAAATGAATTCTTCCCTGAAAGATTCTTGGACAGCTCGATTGACTACAAGGGAAACCATTTTGAGCTTTTGCCATTTGGGGCAGGAAGGAGGGGTTGTCCTGGTATGAACTTTGCTATGCAGCTAGTTGAGCTTACACTAGCTAATCTGCTGTATCGTTTTGACTGGGAATTGCCTAATGGGATGAAAAGAGAAGACTTGAACATGGAAGAAGCTGCTGGGATTACAGTGCAGAACAAAGTTCCTTTATATCTAGCAGCTACACCAGTACATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

345

Amino Acids

38.98

Weight (kDa)

5.41

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	13 - 330	8.3e-76	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	2 cut(s)	85, 629
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	3 cut(s)	141, 690, 767
AfaI	GTAC	3 cut(s)	590, 686, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	212, 412
AgsI	TTSAA	6 cut(s)	149, 158, 232, 242, 680, 961
AhlI	ACTAGT	1 cut(s)	643
AjnI	CCWGG	1 cut(s)	859
AluBI	AGCT	8 cut(s)	487, 795, 826, 883, 892, 902, 974, 1019
AluI	AGCT	8 cut(s)	487, 795, 826, 883, 892, 902, 974, 1019
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	446
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	3 cut(s)	880, 974, 1016
ApoI	RAATTY	3 cut(s)	141, 690, 767
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	739
AsuHPI	GGTGA	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	572, 605
BbsI	GAAGAC	1 cut(s)	960
BbvCI	CCTCAGC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	892, 961, 1028
BccI	CCATC	3 cut(s)	104, 205, 646
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	1 cut(s)	861
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	38
BcuI	ACTAGT	1 cut(s)	643
BfaI	CTAG	4 cut(s)	644, 884, 899, 1013
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	4 cut(s)	85, 881, 975, 1017
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	4 cut(s)	86, 882, 976, 1018
Bme1390I	CCNGG	1 cut(s)	861
Bme18I	GGWCC	1 cut(s)	739
BmgT120I	GGNCC	1 cut(s)	739
BmiI	GGNNCC	2 cut(s)	740, 741
BmrFI	CCNGG	1 cut(s)	861
BmrI	ACTGGG	1 cut(s)	934
BmuI	ACTGGG	1 cut(s)	934
BpiI	GAAGAC	1 cut(s)	960
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	457
Bpu1102I	GCTNAGC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 412
Bse1I	ACTGG	3 cut(s)	632, 929, 1025
Bse3DI	GCAATG	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	4 cut(s)	216, 452, 625, 948
BseLI	CCNNNNNNNGG	2 cut(s)	212, 412
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	471, 474
BseNI	ACTGG	3 cut(s)	632, 929, 1025
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	3 cut(s)	892, 961, 1028
BseYI	CCCAGC	1 cut(s)	977
BsgI	GTGCAG	1 cut(s)	1010
BshFI	GGCC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	2 cut(s)	457, 752
BslI	CCNNNNNNNGG	2 cut(s)	212, 412
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	457, 752
BsnI	GGCC	1 cut(s)	322
Bso31I	GGTCTC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	4 cut(s)	340, 373, 489, 571
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	2 cut(s)	85, 629
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	2 cut(s)	470, 475
BspEI	TCCGGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	740, 741
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	3 cut(s)	632, 929, 1025
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	4 cut(s)	340, 373, 489, 571
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	3 cut(s)	278, 466, 988
Bst6I	CTCTTC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	457, 483, 502
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	4 cut(s)	216, 452, 625, 948
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	4 cut(s)	343, 376, 492, 574
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	4 cut(s)	340, 373, 489, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	889
BstNI	CCWGG	1 cut(s)	861
BstSCI	CCNGG	1 cut(s)	859
BstV1I	GCAGC	3 cut(s)	892, 961, 1028
BstV2I	GAAGAC	1 cut(s)	960
BstX2I	RGATCY	2 cut(s)	340, 373
BstXI	CCANNNNNNTGG	2 cut(s)	706, 750
BstYI	RGATCY	2 cut(s)	340, 373
BsuRI	GGCC	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	4 cut(s)	216, 452, 625, 948
BtsIMutI	CAGTG	4 cut(s)	423, 471, 639, 993
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	589, 685, 1028
CviAII	CATG	4 cut(s)	207, 335, 586, 964
CviQI	GTAC	3 cut(s)	589, 685, 1028
DdeI	CTNAG	3 cut(s)	457, 483, 502
DpnI	GATC	4 cut(s)	342, 375, 491, 573
DpnII	GATC	4 cut(s)	340, 373, 489, 571
DraI	TTTAAA	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	206
Eco147I	AGGCCT	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	739
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	4 cut(s)	210, 338, 589, 967
FaqI	GGGAC	2 cut(s)	457, 752
FatI	CATG	4 cut(s)	206, 334, 585, 963
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	85, 881, 975, 1017
FokI	GGATG	4 cut(s)	223, 439, 612, 955
Fsp4HI	GCNGC	4 cut(s)	85, 881, 975, 1017
FspBI	CTAG	4 cut(s)	644, 884, 899, 1013
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	4 cut(s)	85, 881, 975, 1017
GsaI	CCCAGC	1 cut(s)	981
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	1 cut(s)	329
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	4 cut(s)	210, 338, 589, 967
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HinfI	GANTC	4 cut(s)	75, 496, 757, 783
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	196, 369, 580
Hpy188III	TCNNGA	3 cut(s)	239, 329, 493
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	4 cut(s)	550, 674, 729, 840
HpyCH4III	ACNGT	3 cut(s)	278, 466, 988
HpyCH4V	TGCA	6 cut(s)	189, 440, 672, 722, 880, 991
HpyF10VI	GCNNNNNNNGC	1 cut(s)	889
HpyF3I	CTNAG	3 cut(s)	457, 483, 502
Hsp92II	CATG	4 cut(s)	210, 338, 589, 967
HspAI	GCGC	1 cut(s)	518
KflI	GGGWCCC	1 cut(s)	739
Kpn2I	TCCGGA	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	340, 373, 489, 571
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	3 cut(s)	892, 961, 1028
MaeI	CTAG	4 cut(s)	644, 884, 899, 1013
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	4 cut(s)	342, 375, 491, 573
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	4 cut(s)	340, 373, 489, 571
MboII	GAAGA	6 cut(s)	170, 350, 575, 763, 965, 980
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	340, 373
MluCI	AATT	6 cut(s)	141, 149, 675, 690, 767, 929
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	93, 252
MnlI	CCTC	9 cut(s)	113, 154, 173, 292, 466, 504, 520, 527, 843
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	861
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	861
MwoI	GCNNNNNNNGC	1 cut(s)	889
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	4 cut(s)	340, 373, 489, 571
NlaIII	CATG	4 cut(s)	210, 338, 589, 967
NlaIV	GGNNCC	2 cut(s)	740, 741
NmeAIII	GCCGAG	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	496, 757, 783
PkrI	GCNGC	4 cut(s)	86, 882, 976, 1018
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	739
Psp5II	RGGWCCY	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	859
PspFI	CCCAGC	1 cut(s)	977
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	2 cut(s)	740, 741
PspPI	GGNCC	1 cut(s)	739
PspPPI	RGGWCCY	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	340, 373
RsaI	GTAC	3 cut(s)	590, 686, 1029
RsaNI	GTAC	3 cut(s)	589, 685, 1028
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	85, 881, 975, 1017
Sau3AI	GATC	4 cut(s)	340, 373, 489, 571
Sau96I	GGNCC	1 cut(s)	739
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	861
SinI	GGWCC	1 cut(s)	739
SpeI	ACTAGT	1 cut(s)	643
Sse9I	AATT	6 cut(s)	141, 149, 675, 690, 767, 929
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	2 cut(s)	85, 629
SspMI	CTAG	4 cut(s)	644, 884, 899, 1013
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	859
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	278, 466, 988
TaqI	TCGA	3 cut(s)	348, 361, 797
TasI	AATT	6 cut(s)	141, 149, 675, 690, 767, 929
TatI	WGTACW	1 cut(s)	1027
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	3 cut(s)	496, 757, 783
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	4 cut(s)	430, 471, 639, 993
TseI	GCWGC	3 cut(s)	880, 974, 1016
TspDTI	ATGAA	6 cut(s)	63, 182, 351, 780, 881, 959
TspRI	CASTG	4 cut(s)	430, 471, 639, 993
VpaK11BI	GGWCC	1 cut(s)	739
XapI	RAATTY	3 cut(s)	141, 690, 767
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 213
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	4 cut(s)	644, 884, 899, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.