FvH4_6g12330

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001697
Physical Location & Seq
Reverse (-)
7440482 .. 7442056
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12330.t1

Sequence Viewer

Length: 960 bp
ATGGCAAGAGAGCTCTCCTATATCTCTGTCAGCTTAGTTTTTTCTCCCTATGGTGAGCACTGGAGGGAGATTCGTAAGATTGTGATGTTAGAACTACTTGGTCCCAAGAGAATTCAAATGTTTCGTTCTGTGAGGGATGAAGAGGTTGGAGTTATGATCGACTCTATAACTCGCAATTCTAAGGGTATCATCAATCTCAATGAAGTGTCACTTCACTTAGCCAACAATATCGTGTGTCGTTGTGCTTTTGGTAGAAAGTTTGATGGTGCGGCAGGTGACAATAGCAAGAGCACAATTAATGAATTGATTGAAGAAACAAGGATGTTATTGGGAGGATTCTTTCTGTCAGACTATATACCATGGATGGGTTGGCTAGACAAGTTCAGTGGTCTTGAGAAAAGGGCAGACAAGTGTTTTGAAGGGCTCGACAACATCAGTGACACGGTGATTGAGGAACACCGTGATCCTAAAATGCTCAAACCAGAGAATGAAGATCTTGTTGCTGTCCTGCTTCGACTTCAAAACGATCCGAATCAAGCGATCACCCTCACTAATGACCAAATGAAGGCTGTTATCAATGATATGTTTATTGGCGGGACTGATACAACCACATCGACACTGGTGTGGACAATGGCTGAGCTGATCAGGCACCCTGTGGCGTTGACGAAAGCACAAAACGAGGTAAGAGAGCTCATCAAGAGCAAAGGGAAGGTTGAAGAAAGTGACCTTCATCAACTCGTGTACCTGAAGTCAGTCATCAAGGAAGGTCTACGATTACATCCACCATTGCCATTACAAATTCCAAGACAAACCACAGAGAGTTGCACAATTGGAGATTACCACATTCCTGCCAAAACAATGGTGTTTGTTCATGCAAAAATGATTGGAAGGGACCCGAAAGTTTGGGAGAATCCAAATGAATTCTGCCCTGAAAGATTCTTGGACAGCTCAGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

320

Amino Acids

36.33

Weight (kDa)

5.71

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 12 - 317 1.7e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 263
Acc36I ACCTGC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 648
AccI GTMKAC 1 cut(s) 769
AciI CCGC 2 cut(s) 269, 594
AclWI GGATC 2 cut(s) 458, 521
AcsI RAATTY 3 cut(s) 111, 798, 920
AcuI CTGAAG 1 cut(s) 767
AdeI CACNNNGTG 1 cut(s) 655
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 2 cut(s) 365, 565
AgsI TTSAA 5 cut(s) 116, 311, 419, 521, 716
AleI CACNNNNGTG 1 cut(s) 622
AluBI AGCT 5 cut(s) 13, 33, 640, 691, 948
AluI AGCT 5 cut(s) 13, 33, 640, 691, 948
Alw21I GWGCWC 4 cut(s) 15, 60, 293, 693
AlwI GGATC 2 cut(s) 458, 521
ApoI RAATTY 3 cut(s) 111, 798, 920
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AseI ATTAAT 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 101, 892
AsuHPI GGTGA 4 cut(s) 65, 287, 457, 535
AvaII GGWCC 2 cut(s) 101, 892
BaeI ACNNNNGTAYC 2 cut(s) 725, 758
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 3 cut(s) 15, 426, 693
BauI CACGAG 1 cut(s) 737
Bbv12I GWGCWC 4 cut(s) 15, 60, 293, 693
BccI CCATC 2 cut(s) 257, 358
BclI TGATCA 1 cut(s) 642
BfaI CTAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 493
BisI GCNGC 1 cut(s) 270
BlpI GCTNAGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 271
Bme18I GGWCC 2 cut(s) 101, 892
BmgT120I GGNCC 2 cut(s) 101, 892
BmiI GGNNCC 4 cut(s) 103, 650, 893, 894
BpmI CTGGAG 1 cut(s) 82
Bpu1102I GCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 565
Bse1I ACTGG 2 cut(s) 65, 624
Bse3DI GCAATG 1 cut(s) 785
Bse8I GATNNNNATC 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 4 cut(s) 142, 327, 369, 778
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 365, 565
BseMI GCAATG 1 cut(s) 785
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 2 cut(s) 65, 624
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 4 cut(s) 15, 60, 293, 693
BslFI GGGAC 3 cut(s) 87, 610, 905
BslI CCNNNNNNNGG 2 cut(s) 365, 565
BsmFI GGGAC 3 cut(s) 87, 610, 905
Bsp1286I GDGCHC 5 cut(s) 15, 60, 293, 426, 693
Bsp143I GATC 6 cut(s) 156, 463, 493, 526, 540, 642
Bsp1720I GCTNAGC 1 cut(s) 636
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 2 cut(s) 269, 594
BspCNI CTCAG 1 cut(s) 628
BspLI GGNNCC 4 cut(s) 103, 650, 893, 894
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 2 cut(s) 458, 521
BspT107I GGYRCC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 785
BsrI ACTGG 2 cut(s) 65, 624
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 6 cut(s) 156, 463, 493, 526, 540, 642
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 737
Bst4CI ACNGT 2 cut(s) 445, 461
Bst6I CTCTTC 1 cut(s) 135
BstDEI CTNAG 5 cut(s) 34, 180, 217, 636, 949
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 4 cut(s) 142, 327, 369, 778
BstKTI GATC 6 cut(s) 159, 466, 496, 529, 543, 645
BstMBI GATC 6 cut(s) 156, 463, 493, 526, 540, 642
BstMWI GCNNNNNNNGC 1 cut(s) 646
BstX2I RGATCY 1 cut(s) 493
BstXI CCANNNNNNTGG 1 cut(s) 859
BstYI RGATCY 1 cut(s) 493
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 4 cut(s) 142, 327, 369, 778
BtsIMutI CAGTG 4 cut(s) 58, 391, 442, 617
BveI ACCTGC 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 101, 892
Csp6I GTAC 1 cut(s) 742
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviAII CATG 2 cut(s) 360, 872
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 5 cut(s) 34, 180, 217, 636, 949
DpnI GATC 6 cut(s) 158, 465, 495, 528, 542, 644
DpnII GATC 6 cut(s) 156, 463, 493, 526, 540, 642
DraIII CACNNNGTG 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Ecl136II GAGCTC 2 cut(s) 13, 691
Eco130I CCWWGG 1 cut(s) 359
Eco24I GRGCYC 3 cut(s) 15, 426, 693
Eco47I GGWCC 2 cut(s) 101, 892
Eco53kI GAGCTC 2 cut(s) 13, 691
Eco57I CTGAAG 1 cut(s) 767
EcoICRI GAGCTC 2 cut(s) 13, 691
EcoO109I RGGNCCY 1 cut(s) 892
EcoRI GAATTC 2 cut(s) 111, 920
EcoT14I CCWWGG 1 cut(s) 359
EcoT38I GRGCYC 3 cut(s) 15, 426, 693
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 363, 875
FaiI YATR 9 cut(s) 21, 51, 155, 167, 354, 356, 361, 584, 873
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 3 cut(s) 87, 610, 905
FatI CATG 2 cut(s) 359, 871
FauI CCCGC 1 cut(s) 587
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 4 cut(s) 149, 334, 376, 765
FriOI GRGCYC 3 cut(s) 15, 426, 693
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 1 cut(s) 374
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 82
Hin1II CATG 2 cut(s) 363, 875
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 6 cut(s) 70, 161, 336, 532, 910, 936
HphI GGTGA 4 cut(s) 65, 287, 457, 535
Hpy166II GTNNAC 4 cut(s) 627, 663, 742, 770
Hpy188I TCNGA 2 cut(s) 349, 531
Hpy188III TCNNGA 2 cut(s) 392, 697
Hpy8I GTNNAC 4 cut(s) 627, 663, 742, 770
HpyAV CCTTC 6 cut(s) 413, 559, 703, 737, 758, 882
HpyCH4III ACNGT 2 cut(s) 445, 461
HpyCH4V TGCA 2 cut(s) 825, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 646
HpyF3I CTNAG 5 cut(s) 34, 180, 217, 636, 949
Hsp92II CATG 2 cut(s) 363, 875
KflI GGGWCCC 1 cut(s) 892
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 6 cut(s) 156, 463, 493, 526, 540, 642
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 4 cut(s) 207, 275, 437, 722
MalI GATC 6 cut(s) 158, 465, 495, 528, 542, 644
MboI GATC 6 cut(s) 156, 463, 493, 526, 540, 642
MboII GAAGA 4 cut(s) 152, 323, 503, 728
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 5 cut(s) 15, 60, 293, 426, 693
MluCI AATT 7 cut(s) 111, 175, 294, 302, 798, 828, 920
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 7 cut(s) 57, 126, 136, 326, 445, 557, 673
MseI TTAA 2 cut(s) 297, 958
MslI CAYNNNNRTG 1 cut(s) 622
MunI CAATTG 1 cut(s) 828
MwoI GCNNNNNNNGC 1 cut(s) 646
NcoI CCATGG 1 cut(s) 359
NdeII GATC 6 cut(s) 156, 463, 493, 526, 540, 642
NlaIII CATG 2 cut(s) 363, 875
NlaIV GGNNCC 4 cut(s) 103, 650, 893, 894
NmuCI GTSAC 4 cut(s) 207, 275, 437, 722
OliI CACNNNNGTG 1 cut(s) 622
PaqCI CACCTGC 1 cut(s) 263
PfeI GAWTC 5 cut(s) 70, 336, 532, 910, 936
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 892
PshBI ATTAAT 1 cut(s) 297
Psp124BI GAGCTC 2 cut(s) 15, 693
Psp5II RGGWCCY 1 cut(s) 892
PspN4I GGNNCC 4 cut(s) 103, 650, 893, 894
PspPI GGNCC 2 cut(s) 101, 892
PspPPI RGGWCCY 1 cut(s) 892
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 622
SacI GAGCTC 2 cut(s) 15, 693
SaqAI TTAA 2 cut(s) 297, 958
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 6 cut(s) 156, 463, 493, 526, 540, 642
Sau96I GGNCC 2 cut(s) 101, 892
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 5 cut(s) 15, 60, 293, 426, 693
SinI GGWCC 2 cut(s) 101, 892
SmiMI CAYNNNNRTG 1 cut(s) 622
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 7 cut(s) 111, 175, 294, 302, 798, 828, 920
SsiI CCGC 2 cut(s) 269, 594
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 2 cut(s) 15, 693
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 445, 461
TaqI TCGA 4 cut(s) 159, 426, 514, 614
TasI AATT 7 cut(s) 111, 175, 294, 302, 798, 828, 920
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 5 cut(s) 70, 336, 532, 910, 936
Tru1I TTAA 2 cut(s) 297, 958
Tru9I TTAA 2 cut(s) 297, 958
TscAI CASTG 4 cut(s) 65, 391, 442, 624
TseFI GTSAC 4 cut(s) 207, 275, 437, 722
Tsp45I GTSAC 4 cut(s) 207, 275, 437, 722
TspDTI ATGAA 8 cut(s) 153, 216, 315, 504, 578, 719, 860, 933
TspRI CASTG 4 cut(s) 65, 391, 442, 624
VpaK11BI GGWCC 2 cut(s) 101, 892
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 3 cut(s) 111, 798, 920
XcmI CCANNNNNNNNNTGG 2 cut(s) 366, 616
XmiI GTMKAC 1 cut(s) 769
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.