Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Reverse (-)

10688042 .. 10689926

Gene Structure 1885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGTTCTTACTTATCTTCATCCATGGTGCTTCTACTCCTTGTTTTTCTCATACCCTTCATTTTCTTGCTTTTGATGAAGCAAAATGCTAGAGGAAAGTGGTTGCCTTCTGGTCCTAGAAGGCTACCTCTCATAGGGAACCTTCACCATCTTTATGATGATTTAACCCATTCTGTTCTTCAACACCTTTCTAGTCAATATGGGCCAAACATGTTCATGCAATTAGGCTCGAGGCCAACTCTAGTAATCTCCTCAGCCGAAATGGCAACAGAGGTTTTGAAAACTCATGACCTAGTTTTTCAGGTAAGGAAGATTGTGATCTTGGAACTACTTGGTCCAAAGAGGGTCCCAATGTTTCAGTCTGTGATGCATCTCCTCTTGTTAAATATTCAGGAGTTGCTTAAAGAATCGATGGTCCTTTTGGGAGGACTCTATGTATCGGATTTTCTACCACGGATCAGCTGGATAAACAAGTTCAGTGGTCTTGAACAAAGAGACATGTTTTTAGCAGGAACTGATACCACCTCAGCCGTACTGGTATGGACAATGGCTGAGCTTATGCGGAACCCTCTAGTGTTGAAAAAGCACAAAATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

199

Amino Acids

22.74

Weight (kDa)

9.87

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	36 - 101	2.5e-09	Cytochrome P450
p450	PF00067	166 - 195	7.8e-06	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	562
AclWI	GGATC	1 cut(s)	464
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	2 cut(s)	210, 498
AgsI	TTSAA	4 cut(s)	182, 280, 488, 580
AluBI	AGCT	2 cut(s)	462, 556
AluI	AGCT	2 cut(s)	462, 556
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	203, 233
AspS9I	GGNCC	5 cut(s)	113, 203, 335, 346, 415
AsuHPI	GGTGA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	4 cut(s)	113, 335, 346, 415
BbvCI	CCTCAGC	2 cut(s)	253, 526
BccI	CCATC	2 cut(s)	156, 406
BceAI	ACGGC	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	6 cut(s)	90, 117, 192, 242, 293, 572
BglI	GCCNNNNNGGC	1 cut(s)	263
BlpI	GCTNAGC	1 cut(s)	552
Bme18I	GGWCC	4 cut(s)	113, 335, 346, 415
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	5 cut(s)	113, 203, 335, 346, 415
BmiI	GGNNCC	4 cut(s)	140, 347, 348, 566
BmsI	GCATC	2 cut(s)	357, 379
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu10I	CCTNAGC	2 cut(s)	253, 526
Bpu1102I	GCTNAGC	1 cut(s)	552
Bsa29I	ATCGAT	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	24, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	317
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	24, 452
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	3 cut(s)	267, 540, 543
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	2 cut(s)	241, 365
BshFI	GGCC	2 cut(s)	205, 235
BshVI	ATCGAT	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	205, 235
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	318, 456
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	1 cut(s)	562
BspANI	GGCC	2 cut(s)	205, 235
BspCNI	CTCAG	3 cut(s)	266, 539, 544
BspDI	ATCGAT	1 cut(s)	410
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	4 cut(s)	140, 347, 348, 566
BspPI	GGATC	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	24, 452
BssMI	GATC	2 cut(s)	318, 456
BssT1I	CCWWGG	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	253, 526, 552
BstDSI	CCRYGG	2 cut(s)	24, 452
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	321, 459
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	318, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNSI	RCATGY	2 cut(s)	214, 502
Bsu15I	ATCGAT	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	205, 235
BsuTUI	ATCGAT	1 cut(s)	410
BtgI	CCRYGG	2 cut(s)	24, 452
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	5 cut(s)	113, 203, 335, 346, 415
ClaI	ATCGAT	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	533
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	5 cut(s)	25, 211, 217, 287, 499
CviJI	RGCY	9 cut(s)	124, 205, 228, 235, 257, 462, 530, 551, 556
CviKI_1	RGCY	9 cut(s)	124, 205, 228, 235, 257, 462, 530, 551, 556
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	3 cut(s)	253, 526, 552
DpnI	GATC	2 cut(s)	320, 458
DpnII	GATC	2 cut(s)	318, 456
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	4 cut(s)	113, 335, 346, 415
Eco88I	CYCGRG	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	5 cut(s)	28, 214, 220, 290, 502
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	5 cut(s)	24, 210, 216, 286, 498
FokI	GGATG	1 cut(s)	7
FspBI	CTAG	6 cut(s)	90, 117, 192, 242, 293, 572
HaeIII	GGCC	2 cut(s)	205, 235
Hin1II	CATG	5 cut(s)	28, 214, 220, 290, 502
HinfI	GANTC	2 cut(s)	407, 429
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	3 cut(s)	287, 392, 485
HpyAV	CCTTC	4 cut(s)	67, 114, 117, 152
HpyCH4V	TGCA	2 cut(s)	220, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	3 cut(s)	253, 526, 552
Hsp92II	CATG	5 cut(s)	28, 214, 220, 290, 502
KflI	GGGWCCC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	318, 456
LpnPI	CCDG	6 cut(s)	96, 287, 377, 448, 495, 521
LweI	GCATC	2 cut(s)	357, 379
MaeI	CTAG	6 cut(s)	90, 117, 192, 242, 293, 572
MalI	GATC	2 cut(s)	320, 458
MboI	GATC	2 cut(s)	318, 456
MboII	GAAGA	3 cut(s)	9, 170, 322
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	423
Mph1103I	ATGCAT	1 cut(s)	372
MseI	TTAA	3 cut(s)	164, 383, 402
MslI	CAYNNNNRTG	2 cut(s)	153, 215
MspA1I	CMGCKG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	318, 456
NlaIII	CATG	5 cut(s)	28, 214, 220, 290, 502
NlaIV	GGNNCC	4 cut(s)	140, 347, 348, 566
NsiI	ATGCAT	1 cut(s)	372
NspI	RCATGY	2 cut(s)	214, 502
PaeR7I	CTCGAG	1 cut(s)	229
PagI	TCATGA	1 cut(s)	286
PciI	ACATGT	2 cut(s)	210, 498
PfeI	GAWTC	1 cut(s)	407
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PpuMI	RGGWCCY	1 cut(s)	346
PscI	ACATGT	2 cut(s)	210, 498
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	4 cut(s)	140, 347, 348, 566
PspPI	GGNCC	5 cut(s)	113, 203, 335, 346, 415
PspPPI	RGGWCCY	1 cut(s)	346
PspXI	VCTCGAGB	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	462
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	2 cut(s)	153, 215
SaqAI	TTAA	3 cut(s)	164, 383, 402
Sau3AI	GATC	2 cut(s)	318, 456
Sau96I	GGNCC	5 cut(s)	113, 203, 335, 346, 415
SchI	GAGTC	1 cut(s)	423
SfaNI	GCATC	2 cut(s)	357, 379
Sfr274I	CTCGAG	1 cut(s)	229
SinI	GGWCC	4 cut(s)	113, 335, 346, 415
SlaI	CTCGAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	153, 215
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	1 cut(s)	562
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	6 cut(s)	90, 117, 192, 242, 293, 572
StyI	CCWWGG	1 cut(s)	24
TaqI	TCGA	2 cut(s)	230, 410
TasI	AATT	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	164, 383, 402
Tru9I	TTAA	3 cut(s)	164, 383, 402
TscAI	CASTG	1 cut(s)	484
TspDTI	ATGAA	4 cut(s)	9, 49, 92, 205
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	4 cut(s)	113, 335, 346, 415
XagI	CCTNNNNNAGG	1 cut(s)	132
XceI	RCATGY	2 cut(s)	214, 502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	459
XhoI	CTCGAG	1 cut(s)	229
XspI	CTAG	6 cut(s)	90, 117, 192, 242, 293, 572
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.