Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007207.1

Orthogroup ID

OG0001697

Physical Location & Seq

Genomic Coordinates Reverse (-)

15675 .. 16307

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgctagaggagagtggttgcctcctggtcctaggaggccacctgcaccatctttatgatgaattaacccattctgttcttcaacatctttctagaccagccttgtatgttgcaaagaagcttagctatggatgtgtcaatctatcgtttgctccttacggtgagtattggagggaggtaaggaagtttgtgatcttggaactacttggtccaaagaaggtccaaatgtttcagtctgtgagggatgaagatgttggagttatgatcgactcaatagctcataagtgtaatggtattgtcaatctcagtgaagtgacagttaccttggccaacaatgttttgtgttgctgcgcttttggtaagaagtatgatggggaaggtgaaattggcatgagtagaagtcatgagttgcttaaagagtcggtggtccttttgggaggactctatgtatcagattttctaccatggatcagctggataaacaagttcagtggtcttgaacaaagagcagacaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

172

Amino Acids

19.3

Weight (kDa)

6.15

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13770 AT4G31500
fragaria_vesca	FvH4_5g06590 FvH4_5g06590 FvH4_5g06590 FvH4_5g06610 FvH4_6g12330
malus_domestica	MD06G1162600.v1.1 MD06G1162700.v1.1 MD06G1162800.v1.1 MD06G1224800.v1.1
prunus_persica	Prupe.5G163200_v2.0.a1 Prupe.5G163300_v2.0.a1
pyrus_communis	pycom06g14560 pycom06g14570
rosa_chinensis	RchiOBHm_Chr2g0172641 RchiOBHm_Chr3g0483831 RchiOBHm_Chr7g0192101 RchiOBHm_Chr7g0192111 RchiOBHm_Chr7g0192121 RchiOBHm_Chr7g0192131
rosa_laevigata	RLG00000004396 RLG00000004397 RLG00000004398 RLG00000004401 RLG00000004402
rosa_multiflora	Rmu_sc0002053.1_g000004 Rmu_sc0002164.1_g000024 Rmu_sc0002164.1_g000025 Rmu_sc0007207.1_g000001 Rmu_sc0011279.1_g000002 Rmu_ssc0000421.1_g000054 Rmu_ssc0000421.1_g000055
rosa_roxburghii	Rroxscaffold_3G00263280 Rroxscaffold_3G00263300
rosa_rugosa	Rorug06G0513300 Rorug06G0513300 Rorug06G0513300
rosa_samantha	Rh2BG418600 Rh2BG651300 Rh2CG617400 Rh2DG665000 Rh7AG123400 Rh7CG127800 Rh7DG126800 Rh7DG127000
rosa_wichuraiana	Rw7G010530 Rw7G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	83, 500
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	4 cut(s)	121, 126, 278, 474
AluI	AGCT	4 cut(s)	121, 126, 278, 474
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	2 cut(s)	37, 327
ApeKI	GCWGC	1 cut(s)	348
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	4 cut(s)	28, 209, 220, 427
AsuHPI	GGTGA	2 cut(s)	173, 392
AvaII	GGWCC	4 cut(s)	28, 209, 220, 427
AvrII	CCTAGG	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	2 cut(s)	57, 365
BciT130I	CCWGG	1 cut(s)	26
BfaI	CTAG	3 cut(s)	5, 32, 93
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	349
BlnI	CCTAGG	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	4 cut(s)	28, 209, 220, 427
BmgT120I	GGNCC	4 cut(s)	28, 209, 220, 427
BmrFI	CCNGG	1 cut(s)	26
Bpu1102I	GCTNAGC	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	31, 324, 464
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	31, 324, 464
BseGI	GGATG	2 cut(s)	137, 250
BseMII	CTCAG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	39, 329
BsnI	GGCC	2 cut(s)	39, 329
Bsp143I	GATC	3 cut(s)	192, 264, 468
Bsp1720I	GCTNAGC	1 cut(s)	122
Bsp19I	CCATGG	1 cut(s)	464
BspANI	GGCC	2 cut(s)	39, 329
BspCNI	CTCAG	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	476
BssECI	CCNNGG	3 cut(s)	31, 324, 464
BssMI	GATC	3 cut(s)	192, 264, 468
BssT1I	CCWWGG	3 cut(s)	31, 324, 464
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	161, 319
BstDEI	CTNAG	2 cut(s)	122, 305
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	137, 250
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	3 cut(s)	195, 267, 471
BstMBI	GATC	3 cut(s)	192, 264, 468
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	39, 329
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	137, 250
BtsIMutI	CAGTG	2 cut(s)	313, 496
BveI	ACCTGC	1 cut(s)	51
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	4 cut(s)	28, 209, 220, 427
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	3 cut(s)	391, 404, 465
CviJI	RGCY	7 cut(s)	39, 101, 121, 126, 278, 329, 474
CviKI_1	RGCY	7 cut(s)	39, 101, 121, 126, 278, 329, 474
DdeI	CTNAG	2 cut(s)	122, 305
DpnI	GATC	3 cut(s)	194, 266, 470
DpnII	GATC	3 cut(s)	192, 264, 468
EaeI	YGGCCR	1 cut(s)	327
Eco130I	CCWWGG	3 cut(s)	31, 324, 464
Eco47I	GGWCC	4 cut(s)	28, 209, 220, 427
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	3 cut(s)	31, 324, 464
ErhI	CCWWGG	3 cut(s)	31, 324, 464
FaeI	CATG	3 cut(s)	394, 407, 468
FatI	CATG	3 cut(s)	390, 403, 464
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	2 cut(s)	144, 257
Fsp4HI	GCNGC	1 cut(s)	349
FspBI	CTAG	3 cut(s)	5, 32, 93
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	1 cut(s)	349
HaeIII	GGCC	2 cut(s)	39, 329
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	3 cut(s)	394, 407, 468
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	269, 419, 441
HphI	GGTGA	2 cut(s)	173, 392
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	3 cut(s)	93, 404, 497
HpyAV	CCTTC	2 cut(s)	211, 371
HpyCH4III	ACNGT	2 cut(s)	161, 319
HpyCH4V	TGCA	2 cut(s)	46, 113
HpyF3I	CTNAG	2 cut(s)	122, 305
Hsp92II	CATG	3 cut(s)	394, 407, 468
HspAI	GCGC	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	192, 264, 468
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	5 cut(s)	11, 38, 56, 111, 460
Lsp1109I	GCAGC	1 cut(s)	335
MaeI	CTAG	3 cut(s)	5, 32, 93
MaeIII	GTNAC	2 cut(s)	313, 319
MalI	GATC	3 cut(s)	194, 266, 470
MboI	GATC	3 cut(s)	192, 264, 468
MboII	GAAGA	2 cut(s)	71, 260
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	2 cut(s)	62, 384
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	3 cut(s)	263, 428, 435
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	6 cut(s)	29, 32, 165, 169, 234, 431
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	2 cut(s)	65, 414
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	464
NdeII	GATC	3 cut(s)	192, 264, 468
NlaIII	CATG	3 cut(s)	394, 407, 468
NmuCI	GTSAC	1 cut(s)	313
PagI	TCATGA	1 cut(s)	403
PaqCI	CACCTGC	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	350
PleI	GAGTC	3 cut(s)	263, 427, 435
PpsI	GAGTC	3 cut(s)	263, 427, 435
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	4 cut(s)	28, 209, 220, 427
PvuII	CAGCTG	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	65, 414
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	3 cut(s)	192, 264, 468
Sau96I	GGNCC	4 cut(s)	28, 209, 220, 427
SchI	GAGTC	3 cut(s)	263, 428, 435
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	9 cut(s)	45, 123, 128, 180, 222, 280, 326, 382, 476
SinI	GGWCC	4 cut(s)	28, 209, 220, 427
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	62, 384
SspMI	CTAG	3 cut(s)	5, 32, 93
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	3 cut(s)	31, 324, 464
TaaI	ACNGT	2 cut(s)	161, 319
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	62, 384
Tru1I	TTAA	2 cut(s)	65, 414
Tru9I	TTAA	2 cut(s)	65, 414
TscAI	CASTG	2 cut(s)	313, 496
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	75, 261
TspRI	CASTG	2 cut(s)	313, 496
VpaK11BI	GGWCC	4 cut(s)	28, 209, 220, 427
XbaI	TCTAGA	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XmaJI	CCTAGG	1 cut(s)	31
XspI	CTAG	3 cut(s)	5, 32, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.