Rorug02G0192100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0021426
Physical Location & Seq
Reverse (-)
17920603 .. 17922418
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0192100.1

Sequence Viewer

Length: 936 bp
ATGACCCAGATTCCAGTGGTAGATTTCTCAGATCCCGAGTGCTTGAAGCCAGGGACAAGTTCATGGCTCTCGGCACGCAATCAAGTTTGCAATGCACTCGAGGATCAGTTTGGCTGTTTTACAGCGATACTGTCCAACAAAGTTACCTTGGAACTTCACAACACCGTCTTTGGTGCCGTGAACGAGTTGTTTGAATCCCCAGACGGCATCAAAGATCAAAACAAGTACGAAAAACGGCCTTTCTGTGGCCATTTCAAGTCGAATTCTGTCCTTGAACGCTTGGGGATTTATGATCCTACAAACCCCGAAGAAATTCACAAGTTTTCACATCTTTTTTGGCCTACTGGAAATGATCAATTTTGTGATGGTGTCCATTTGTACGCAAAAGTGATGAAAGAACTAGATCAGGCTGTGACCAGAATGGTATTCGAAAACTATGGTGTAGAGAAGCACCATGATGACCACATTGAATCCAGTTTTTACTGCTTTCAATTTTCAAAATACACGGAGCCTGAAAAATCTGGAAGTAATGTGGGTATAGTGAGTCATACAGATAAGAACTTCACCTCCATACTCCATCAAAACCAGATCAATGGCCTCGAGATTTATACAAAGGATGGCGAGTGGATAGGTTTCGATCCTCATCCTCTACCTTCATCCTTCATATTCATAGCAAGTGATGTATTTCAGGTTTGGAGCAATGACAGAATAAGAGCTTGTAAACACAGGGTCAACCTGATTCACTCAGATAAGATAAGATACTCGTTTGGGCTCTTCTCACTCAAACGAGGAGTAACAACCGTACCGGAGGAGCTGGTGGACAAGGATCACCCTTTAAAGTATAAGCCGTTGAATCAGGTTGAGTATATTCAAGCGCAGGGTTACAAAGATGGTGAAGGACATGAGTGTAAGCTCAAGGCATTCTGTGGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.61

Weight (kDa)

5.82

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 164 - 259 7.6e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021426)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0022831
rosa_rugosa Rorug02G0192000 Rorug02G0192100 Rorug06G0513300
rosa_samantha Rh5CG175300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AclWI GGATC 5 cut(s) 26, 111, 287, 632, 834
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 262, 312
AfaI GTAC 3 cut(s) 227, 380, 804
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 9 cut(s) 46, 194, 256, 275, 470, 491, 498, 853, 872
AjnI CCWGG 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 551, 583
AluBI AGCT 3 cut(s) 716, 814, 913
AluI AGCT 3 cut(s) 716, 814, 913
AlwI GGATC 5 cut(s) 26, 111, 287, 632, 834
Ama87I CYCGRG 3 cut(s) 35, 98, 599
AoxI GGCC 4 cut(s) 236, 247, 338, 595
ApoI RAATTY 2 cut(s) 262, 312
Asp700I GAANNNNTTC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 877
AsuHPI GGTGA 3 cut(s) 556, 821, 905
AsuII TTCGAA 1 cut(s) 429
AvaI CYCGRG 3 cut(s) 35, 98, 599
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 774
BccI CCATC 4 cut(s) 359, 585, 611, 884
BceAI ACGGC 4 cut(s) 161, 220, 251, 832
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 352
BfaI CTAG 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 3 cut(s) 35, 98, 599
BmiI GGNNCC 2 cut(s) 175, 510
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 899
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 50, 147
BsaWI WCCGGW 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 14, 349, 474
Bse3DI GCAATG 2 cut(s) 97, 706
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 50, 147
BseGI GGATG 3 cut(s) 622, 643, 656
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 2 cut(s) 97, 706
BseMII CTCAG 2 cut(s) 42, 759
BseNI ACTGG 3 cut(s) 14, 349, 474
BseRI GAGGAG 2 cut(s) 804, 824
BshFI GGCC 4 cut(s) 238, 249, 340, 597
BshNI GGYRCC 1 cut(s) 173
BsiHKCI CYCGRG 3 cut(s) 35, 98, 599
BsiSI CCGG 1 cut(s) 806
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 920
BsnI GGCC 4 cut(s) 238, 249, 340, 597
BsoBI CYCGRG 3 cut(s) 35, 98, 599
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 774
Bsp143I GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 826
BspANI GGCC 4 cut(s) 238, 249, 340, 597
BspCNI CTCAG 2 cut(s) 41, 758
BspLI GGNNCC 2 cut(s) 175, 510
BspPI GGATC 5 cut(s) 26, 111, 287, 632, 834
BspQI GCTCTTC 1 cut(s) 779
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 2 cut(s) 97, 706
BsrI ACTGG 3 cut(s) 14, 349, 474
BssECI CCNNGG 2 cut(s) 50, 147
BssMI GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 826
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 132, 166, 802
Bst6I CTCTTC 1 cut(s) 779
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 28, 745
BstF5I GGATG 3 cut(s) 622, 643, 656
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 9 cut(s) 34, 106, 217, 295, 355, 406, 591, 640, 829
BstMBI GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 826
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 4 cut(s) 238, 249, 340, 597
BtsCI GGATG 3 cut(s) 622, 643, 656
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 877
Csp6I GTAC 3 cut(s) 226, 379, 803
CviAII CATG 3 cut(s) 63, 455, 902
CviQI GTAC 3 cut(s) 226, 379, 803
DdeI CTNAG 2 cut(s) 28, 745
DpnI GATC 9 cut(s) 33, 105, 216, 294, 354, 405, 590, 639, 828
DpnII GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 826
DraI TTTAAA 1 cut(s) 837
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 779
EarI CTCTTC 1 cut(s) 779
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 774
Eco88I CYCGRG 3 cut(s) 35, 98, 599
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 66, 458, 905
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 62, 454, 901
FbaI TGATCA 1 cut(s) 352
FokI GGATG 3 cut(s) 629, 630, 643
FriOI GRGCYC 1 cut(s) 774
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 876
HaeIII GGCC 4 cut(s) 238, 249, 340, 597
HapII CCGG 1 cut(s) 806
HhaI GCGC 1 cut(s) 877
Hin1II CATG 3 cut(s) 66, 458, 905
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 6 cut(s) 10, 194, 470, 544, 739, 853
HpaII CCGG 1 cut(s) 806
HphI GGTGA 3 cut(s) 556, 821, 905
Hpy166II GTNNAC 4 cut(s) 181, 722, 733, 820
Hpy188I TCNGA 2 cut(s) 31, 748
Hpy188III TCNNGA 3 cut(s) 35, 522, 601
Hpy8I GTNNAC 4 cut(s) 181, 722, 733, 820
HpyAV CCTTC 3 cut(s) 663, 670, 890
HpyCH4III ACNGT 3 cut(s) 132, 166, 802
HpyCH4V TGCA 2 cut(s) 90, 95
HpyF3I CTNAG 2 cut(s) 28, 745
Hsp92II CATG 3 cut(s) 66, 458, 905
HspAI GCGC 1 cut(s) 875
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 826
LguI GCTCTTC 1 cut(s) 779
LmnI GCTCC 3 cut(s) 508, 696, 811
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 401
MaeIII GTNAC 4 cut(s) 142, 412, 793, 881
MalI GATC 9 cut(s) 33, 105, 216, 294, 354, 405, 590, 639, 828
MboI GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 826
MboII GAAGA 2 cut(s) 320, 766
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 774
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 4 cut(s) 262, 312, 356, 491
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 7 cut(s) 94, 577, 608, 651, 657, 782, 802
Mox20I TGGCCA 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 836
MslI CAYNNNNRTG 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 920
MvaI CCWGG 1 cut(s) 51
NdeII GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 826
NlaIII CATG 3 cut(s) 66, 458, 905
NlaIV GGNNCC 2 cut(s) 175, 510
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 412
NspV TTCGAA 1 cut(s) 429
PaeR7I CTCGAG 2 cut(s) 98, 599
PciSI GCTCTTC 1 cut(s) 779
PctI GAATGC 1 cut(s) 920
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 5 cut(s) 10, 194, 470, 739, 853
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 175, 510
PspXI VCTCGAGB 1 cut(s) 98
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 3 cut(s) 227, 380, 804
RsaNI GTAC 3 cut(s) 226, 379, 803
RseI CAYNNNNRTG 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 779
SaqAI TTAA 1 cut(s) 836
Sau3AI GATC 9 cut(s) 31, 103, 214, 292, 352, 403, 588, 637, 826
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 774
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 2 cut(s) 98, 599
SfuI TTCGAA 1 cut(s) 429
SlaI CTCGAG 2 cut(s) 98, 599
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 3 cut(s) 98, 599, 914
SmoI CTYRAG 3 cut(s) 98, 599, 914
Sse9I AATT 4 cut(s) 262, 312, 356, 491
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 132, 166, 802
TaqI TCGA 5 cut(s) 99, 260, 429, 600, 636
TasI AATT 4 cut(s) 262, 312, 356, 491
TfiI GAWTC 5 cut(s) 10, 194, 470, 739, 853
Tru1I TTAA 1 cut(s) 836
Tru9I TTAA 1 cut(s) 836
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 5 cut(s) 51, 407, 645, 652, 658
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 1 cut(s) 21
XapI RAATTY 2 cut(s) 262, 312
XhoI CTCGAG 2 cut(s) 98, 599
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.