Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0021426

Physical Location & Seq

Genomic Coordinates Forward (+)

17049201 .. 17065227

Gene Structure 16027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG175300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCGATGCAGCCGCGGGGCAGTGCAAGGTGGAGAGATGGCGGGGTGTTATTTTGGTTATGTAGAGTGTATCTGGAAAAACGTATTTGCTTCCACAATTGCAGCTAATCAGCTATATCTCAAAGTTGAGCCACCCCCAACAGCTAATGGCAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTACCTGGAGGACAAGTTTGCTCATGGAGATAGATATCTCACTGCACATGCAGGTTCAGAAGGCCTCTCGGAGTCTCGGGAAGTAGCAAACAAGAAGCCAATGAAAATTGAAAACAAAATGGTTCCACAACAACGACTAATAAAAATCCAAAGCAAAATTGAAGCAACCCATAACAATCAAGAAGAAGCAAAGGAGGGGATGGACTTCGTTTCATGCTGGAAAGAGAAATTCCAGGTGAGATTCAATTACAAACACACAAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

150

Amino Acids

16.98

Weight (kDa)

9.03

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0022831
rosa_rugosa	Rorug02G0192000 Rorug02G0192100 Rorug06G0513300
rosa_samantha	Rh5CG175300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	227
AccII	CGCG	1 cut(s)	15
AciI	CCGC	3 cut(s)	13, 15, 41
AcsI	RAATTY	2 cut(s)	155, 413
AgsI	TTSAA	3 cut(s)	296, 347, 430
AjnI	CCWGG	2 cut(s)	189, 417
AluBI	AGCT	3 cut(s)	104, 112, 143
AluI	AGCT	3 cut(s)	104, 112, 143
Alw26I	GTCTC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	9, 101
ApoI	RAATTY	2 cut(s)	155, 413
AsuHPI	GGTGA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	21, 113
BccI	CCATC	2 cut(s)	31, 379
BciT130I	CCWGG	2 cut(s)	191, 419
BcoDI	GTCTC	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	3 cut(s)	10, 13, 102
BlsI	GCNGC	3 cut(s)	11, 14, 103
Bme1390I	CCNGG	2 cut(s)	191, 419
BmeT110I	CYCGRG	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	191, 419
BpmI	CTGGAG	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	191, 419
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	21, 113
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	261
BspACI	CCGC	3 cut(s)	13, 15, 41
BspANI	GGCC	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	191, 419
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	264
BstNI	CCWGG	2 cut(s)	191, 419
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	189, 417
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	21, 113
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	3 cut(s)	27, 186, 225
BtsIMutI	CAGTG	3 cut(s)	27, 186, 225
BveI	ACCTGC	1 cut(s)	227
Cfr42I	CCGCGG	1 cut(s)	16
CviAII	CATG	3 cut(s)	209, 233, 399
CviJI	RGCY	7 cut(s)	12, 104, 112, 130, 143, 249, 283
CviKI_1	RGCY	7 cut(s)	12, 104, 112, 130, 143, 249, 283
Eco147I	AGGCCT	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	189, 417
EcoRV	GATATC	1 cut(s)	221
FaeI	CATG	3 cut(s)	212, 236, 402
FaiI	YATR	6 cut(s)	60, 115, 210, 234, 357, 400
FatI	CATG	3 cut(s)	208, 232, 398
FauI	CCCGC	2 cut(s)	8, 34
Fnu4HI	GCNGC	3 cut(s)	10, 13, 102
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	10, 13, 102
GluI	GCNGC	3 cut(s)	10, 13, 102
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	212, 236, 402
HinfI	GANTC	3 cut(s)	166, 257, 426
HphI	GGTGA	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	244, 256
Hpy188III	TCNNGA	3 cut(s)	73, 263, 365
HpyAV	CCTTC	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	9, 25, 101, 230, 236
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	212, 236, 402
KspI	CCGCGG	1 cut(s)	16
LpnPI	CCDG	9 cut(s)	58, 136, 176, 183, 203, 222, 388, 404, 431
Lsp1109I	GCAGC	2 cut(s)	21, 113
MaeII	ACGT	1 cut(s)	81
MboII	GAAGA	1 cut(s)	380
MfeI	CAATTG	1 cut(s)	96
MluCI	AATT	7 cut(s)	96, 155, 291, 342, 413, 430, 448
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	3 cut(s)	187, 260, 373
MspA1I	CMGCKG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	191, 419
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	191, 419
MvnI	CGCG	1 cut(s)	15
NlaIII	CATG	3 cut(s)	212, 236, 402
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	236
PceI	AGGCCT	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	166, 426
PkrI	GCNGC	3 cut(s)	11, 14, 103
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	189, 417
PspGI	CCWGG	2 cut(s)	189, 417
PspN4I	GGNNCC	1 cut(s)	309
SacII	CCGCGG	1 cut(s)	16
SatI	GCNGC	3 cut(s)	10, 13, 102
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	191, 419
SetI	ASST	8 cut(s)	31, 84, 106, 114, 145, 192, 241, 423
Sfr303I	CCGCGG	1 cut(s)	16
SgrBI	CCGCGG	1 cut(s)	16
Sse9I	AATT	7 cut(s)	96, 155, 291, 342, 413, 430, 448
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	13, 15, 41
StuI	AGGCCT	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	189, 417
TaiI	ACGT	1 cut(s)	84
TasI	AATT	7 cut(s)	96, 155, 291, 342, 413, 430, 448
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	166, 426
TscAI	CASTG	3 cut(s)	27, 186, 232
TseI	GCWGC	2 cut(s)	9, 101
TspDTI	ATGAA	2 cut(s)	302, 387
TspRI	CASTG	3 cut(s)	27, 186, 232
XapI	RAATTY	2 cut(s)	155, 413
XceI	RCATGY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.