Rorug02G0232800

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0021656
Physical Location & Seq
Reverse (-)
23249825 .. 23250487
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0232800.1

Sequence Viewer

Length: 663 bp
ATGCCACTGACCAAAATCTCTCTGTTTGCTCTCCGCCGTTTTACCCGTTCGATCCTAATCCAAGTCAGACCCACCGAATCCCCGACCCGACTCGCCTTTGCAAAATGGACGGAACCGCGGCTGCAGCACGTGTTCTCGTTTCTGCAGTCGGACGACAATCGGAACTCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAGGATATTCGTCGGGAACTGCTACGCTGCGTGCCCTAGGATTTTGATCAGTCGGTTCCCAGACGTTAGATTCATCACGCTCAAAGGGAAGGCGCACTTCGTTGACTTCAATCTGGTGTCGGAGGGCTGGGGTGGCTACGTGTATCCCTGGATCGCCGCCATGGTCGGTGCTTATCCTTGGCTCGAGGAGATCAGGCTCAAGAGGATGGTCGTCACCGACGAGAGCTTGGAGCTGATTGCCAAGTCTTTCAAGAATTTCAAGCTCCTTGTAAATATAAGTATGAATTTTTCTGTGGAATTTTGCAGCTCCGCTAGGTTCATTTCGTGTGCCGAACCAGGCGGTGACGTTTTCGCAGAGGTGGAGCTCGGTGAAGGCTGTGAATGCTCAGCCGAAGAGGAGAGATTCAATTGTGCCGCTTGCGGCCACGATTGTTGCGCCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

220

Amino Acids

25.3

Weight (kDa)

7.96

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 41 - 73 5e-13 F-box
Transp_inhibit PF18791 93 - 139 8.8e-21 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021656)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002589.1_g000044 Rmu_sc0003731.1_g000003 Rmu_sc0003731.1_g000012
rosa_rugosa Rorug02G0232800 Rorug02G0298300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 118
AciI CCGC 9 cut(s) 34, 116, 118, 205, 375, 528, 558, 633, 639
AclWI GGATC 2 cut(s) 46, 377
AcoI YGGCCR 1 cut(s) 640
AcsI RAATTY 3 cut(s) 472, 502, 515
AcvI CACGTG 1 cut(s) 130
AfaI GTAC 1 cut(s) 194
AflIII ACRYGT 2 cut(s) 129, 357
AgsI TTSAA 4 cut(s) 328, 469, 478, 625
AjnI CCWGG 3 cut(s) 365, 553, 656
AluBI AGCT 5 cut(s) 444, 451, 481, 525, 583
AluI AGCT 5 cut(s) 444, 451, 481, 525, 583
Alw21I GWGCWC 1 cut(s) 585
AlwI GGATC 2 cut(s) 46, 377
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 1 cut(s) 640
ApeKI GCWGC 4 cut(s) 121, 124, 245, 522
ApoI RAATTY 3 cut(s) 472, 502, 515
AspA2I CCTAGG 1 cut(s) 254
AspLEI GCGC 2 cut(s) 313, 656
AsuHPI GGTGA 3 cut(s) 424, 572, 599
AvaI CYCGRG 1 cut(s) 401
AvrII CCTAGG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 585
BbrPI CACGTG 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 4 cut(s) 108, 136, 232, 534
BccI CCATC 1 cut(s) 418
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 3 cut(s) 367, 555, 658
BciVI GTATCC 1 cut(s) 372
BclI TGATCA 1 cut(s) 264
BfaI CTAG 2 cut(s) 255, 531
BfmI CTRYAG 2 cut(s) 122, 143
BfuI GTATCC 1 cut(s) 372
BisI GCNGC 8 cut(s) 119, 122, 125, 246, 375, 523, 633, 640
BlnI CCTAGG 1 cut(s) 254
BlpI GCTNAGC 1 cut(s) 604
BlsI GCNGC 8 cut(s) 120, 123, 126, 247, 376, 524, 634, 641
Bme1390I CCNGG 3 cut(s) 367, 555, 658
BmeT110I CYCGRG 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 114, 275
BmrFI CCNGG 3 cut(s) 367, 555, 658
Bpu1102I GCTNAGC 1 cut(s) 604
BpuEI CTTGAG 1 cut(s) 401
BsaAI YACGTR 2 cut(s) 130, 358
BsaBI GATNNNNATC 2 cut(s) 56, 263
BsaJI CCNNGG 5 cut(s) 116, 254, 365, 378, 395
Bse8I GATNNNNATC 2 cut(s) 56, 263
BseBI CCWGG 3 cut(s) 367, 555, 658
BseDI CCNNGG 5 cut(s) 116, 254, 365, 378, 395
BseGI GGATG 1 cut(s) 429
BseJI GATNNNNATC 2 cut(s) 56, 263
BseMII CTCAG 1 cut(s) 618
BseRI GAGGAG 3 cut(s) 232, 419, 629
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 4 cut(s) 108, 136, 232, 534
BseYI CCCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 585
BsiHKCI CYCGRG 1 cut(s) 401
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 1 cut(s) 642
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 254, 585
Bsp143I GATC 6 cut(s) 51, 168, 198, 264, 369, 408
Bsp1720I GCTNAGC 1 cut(s) 604
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 9 cut(s) 34, 116, 118, 205, 375, 528, 558, 633, 639
BspANI GGCC 1 cut(s) 642
BspCNI CTCAG 1 cut(s) 617
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 114, 275
BspMAI CTGCAG 2 cut(s) 126, 147
BspPI GGATC 2 cut(s) 46, 377
BsrBI CCGCTC 1 cut(s) 205
BssECI CCNNGG 5 cut(s) 116, 254, 365, 378, 395
BssMI GATC 6 cut(s) 51, 168, 198, 264, 369, 408
BssT1I CCWWGG 3 cut(s) 254, 378, 395
Bst2UI CCWGG 3 cut(s) 367, 555, 658
Bst6I CTCTTC 1 cut(s) 606
BstBAI YACGTR 2 cut(s) 130, 358
BstC8I GCNNGC 2 cut(s) 250, 637
BstDEI CTNAG 1 cut(s) 604
BstDSI CCRYGG 2 cut(s) 116, 378
BstF5I GGATG 1 cut(s) 429
BstFNI CGCG 1 cut(s) 118
BstHHI GCGC 2 cut(s) 313, 656
BstKTI GATC 6 cut(s) 54, 171, 201, 267, 372, 411
BstMBI GATC 6 cut(s) 51, 168, 198, 264, 369, 408
BstMWI GCNNNNNNNGC 3 cut(s) 124, 351, 600
BstNI CCWGG 3 cut(s) 367, 555, 658
BstSCI CCNGG 3 cut(s) 365, 553, 656
BstSFI CTRYAG 2 cut(s) 122, 143
BstSLI GKGCMC 1 cut(s) 254
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 4 cut(s) 108, 136, 232, 534
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 642
BtgI CCRYGG 2 cut(s) 116, 378
BtsCI GGATG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 250, 637
CfoI GCGC 2 cut(s) 313, 656
Cfr42I CCGCGG 1 cut(s) 119
Csp6I GTAC 1 cut(s) 193
CspCI CAANNNNNGTGG 1 cut(s) 632
CviAII CATG 1 cut(s) 379
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 604
DpnI GATC 6 cut(s) 53, 170, 200, 266, 371, 410
DpnII GATC 6 cut(s) 51, 168, 198, 264, 369, 408
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 3 cut(s) 254, 378, 395
Eco24I GRGCYC 1 cut(s) 585
Eco53kI GAGCTC 1 cut(s) 583
Eco72I CACGTG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 365, 553, 656
EcoT14I CCWWGG 3 cut(s) 254, 378, 395
EcoT38I GRGCYC 1 cut(s) 585
ErhI CCWWGG 3 cut(s) 254, 378, 395
FaeI CATG 1 cut(s) 382
FaiI YATR 3 cut(s) 380, 494, 500
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 1 cut(s) 378
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 8 cut(s) 119, 122, 125, 246, 375, 523, 633, 640
FokI GGATG 1 cut(s) 436
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 8 cut(s) 119, 122, 125, 246, 375, 523, 633, 640
FspBI CTAG 2 cut(s) 255, 531
GlaI GCGC 2 cut(s) 312, 655
GluI GCNGC 8 cut(s) 119, 122, 125, 246, 375, 523, 633, 640
GsaI CCCAGC 1 cut(s) 349
HaeIII GGCC 1 cut(s) 642
HhaI GCGC 2 cut(s) 313, 656
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 2 cut(s) 311, 654
HinP1I GCGC 2 cut(s) 311, 654
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 4 cut(s) 77, 90, 288, 621
HphI GGTGA 3 cut(s) 424, 572, 599
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 4 cut(s) 68, 151, 162, 340
Hpy188III TCNNGA 3 cut(s) 232, 418, 469
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 2 cut(s) 233, 440
HpyAV CCTTC 2 cut(s) 301, 584
HpyCH4IV ACGT 4 cut(s) 129, 282, 357, 564
HpyCH4V TGCA 6 cut(s) 101, 124, 145, 183, 213, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 351, 600
HpyF3I CTNAG 1 cut(s) 604
HpySE526I ACGT 4 cut(s) 129, 282, 357, 564
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 2 cut(s) 311, 654
Ksp22I TGATCA 1 cut(s) 264
KspI CCGCGG 1 cut(s) 119
Kzo9I GATC 6 cut(s) 51, 168, 198, 264, 369, 408
LmnI GCTCC 4 cut(s) 448, 486, 530, 580
Lsp1109I GCAGC 4 cut(s) 108, 136, 232, 534
MaeI CTAG 2 cut(s) 255, 531
MaeII ACGT 4 cut(s) 129, 282, 357, 564
MaeIII GTNAC 2 cut(s) 430, 560
MalI GATC 6 cut(s) 53, 170, 200, 266, 371, 410
MbiI CCGCTC 1 cut(s) 205
MboI GATC 6 cut(s) 51, 168, 198, 264, 369, 408
MboII GAAGA 1 cut(s) 623
MfeI CAATTG 1 cut(s) 625
MhlI GDGCHC 2 cut(s) 254, 585
MluCI AATT 4 cut(s) 472, 502, 515, 625
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 2 cut(s) 129, 318
MnlI CCTC 7 cut(s) 210, 213, 334, 397, 414, 568, 607
MspA1I CMGCKG 1 cut(s) 118
MspR9I CCNGG 3 cut(s) 367, 555, 658
MunI CAATTG 1 cut(s) 625
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 3 cut(s) 367, 555, 658
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 124, 351, 600
NcoI CCATGG 1 cut(s) 378
NdeII GATC 6 cut(s) 51, 168, 198, 264, 369, 408
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 2 cut(s) 114, 275
NmuCI GTSAC 2 cut(s) 430, 560
PaeR7I CTCGAG 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 605
PfeI GAWTC 3 cut(s) 77, 288, 621
PkrI GCNGC 8 cut(s) 120, 123, 126, 247, 376, 524, 634, 641
PleI GAGTC 1 cut(s) 84
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
PpsI GAGTC 1 cut(s) 84
Ppu21I YACGTR 2 cut(s) 130, 358
Psp124BI GAGCTC 1 cut(s) 585
Psp6I CCWGG 3 cut(s) 365, 553, 656
PspCI CACGTG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 3 cut(s) 365, 553, 656
PspN4I GGNNCC 2 cut(s) 114, 275
PspXI VCTCGAGB 1 cut(s) 401
PstI CTGCAG 2 cut(s) 126, 147
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 585
SacII CCGCGG 1 cut(s) 119
SatI GCNGC 8 cut(s) 119, 122, 125, 246, 375, 523, 633, 640
Sau3AI GATC 6 cut(s) 51, 168, 198, 264, 369, 408
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 3 cut(s) 367, 555, 658
SduI GDGCHC 2 cut(s) 254, 585
SfcI CTRYAG 2 cut(s) 122, 143
Sfr274I CTCGAG 1 cut(s) 401
Sfr303I CCGCGG 1 cut(s) 119
SgrBI CCGCGG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 401, 416
SmoI CTYRAG 2 cut(s) 401, 416
Sse9I AATT 4 cut(s) 472, 502, 515, 625
SsiI CCGC 9 cut(s) 34, 116, 118, 205, 375, 528, 558, 633, 639
SspMI CTAG 2 cut(s) 255, 531
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 3 cut(s) 365, 553, 656
StyI CCWWGG 3 cut(s) 254, 378, 395
TaiI ACGT 4 cut(s) 132, 285, 360, 567
TaqI TCGA 4 cut(s) 50, 167, 201, 402
TasI AATT 4 cut(s) 472, 502, 515, 625
TauI GCSGC 4 cut(s) 121, 377, 635, 642
TfiI GAWTC 3 cut(s) 77, 288, 621
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 430, 560
TseI GCWGC 4 cut(s) 121, 124, 245, 522
Tsp45I GTSAC 2 cut(s) 430, 560
TspDTI ATGAA 3 cut(s) 280, 515, 526
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 12
XapI RAATTY 3 cut(s) 472, 502, 515
XhoI CTCGAG 1 cut(s) 401
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 2 cut(s) 255, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.