Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0021355

Physical Location & Seq

Genomic Coordinates Reverse (-)

32722078 .. 32727691

Gene Structure 5614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGATGATGATCCGCAGTGCCATCGCCAGAAGACTTTCCTCCAAGCCAACCTCATCTTCATCTTCTTATGCTTGGTTGAGTACCACCACCACCGCCACCACTAGTACGACGTCGTTTGAGTTGGTTGATCAAAGCCTCCATGGGAATCATCAGAAGAGGAGGAGGAGCAGCAGCTCGTCATTACCTGTTGGGCTGCCTTCTTACATGAGAGCAGCCGTCTTCTGGGAACCAAACAAACCTCTCTCCATTGAAGAATTCCACATCCCTCGCCCCAAATCCGGTGAAATTCTCATCAAAACCAAGGCCTGTGGAGTCTGCCATTCTGATCTCCATGTTTTGAAGGGTGAGCTTCCATTTGCTAGCCCTTGTGTCGTGGGGCACGAGATTACTGGTGAGGTTGTCGAACATGGACCCGCTACAGACAAAAAGATCACACAAAGATTACCGATTGGATCTAATGTTGTTGGAGCTTTTATCATGCCTTGTGGTACCTGTTTCTTCTGTTCAAAGGGCCACGACGATTTATGTGAGGATTTCTTTGCCTACAACCGTGCCAAAGGAACCCTTTATGATGGTGAAACTCGGTTATTCCTCCGCAGCAGTGGAAAACCTGTATACATGTATAGTATGGGAGGCCTTGCTGAGTACTGTGTTGTACCAGCAAATGGATTGGCTATTTTACCGAAGTCATTGCCATATACAGAGTCTGCCATTTTAGGATGTGCAGTATTTACTGCTTATGGTGCTATGGCACATGCGGCTGAGGTTCGTCCTGGGGATTCAGTTGCTATTATTGGAACTGGGGGTGTTGGATCCAGCTGTCTGCAGATAGCCAGAGCATTTGGTGCCTCCGATATTATTGCAGTTGATATTCAAGACGATAAACTGCAGAAAGCTAAGATATTTGGTGCTACTCATGTTATAAATGCGGCTAAAGAAGATGCTGTTGAAAAAATATTGGAAATAACTGGTGGGAAAGGTGTGGACGTTGCTGTGGAAGCCCTGGGAAAACCACAGACCTTTTTGCAATGCACGCAAAGTGTGAGAGATGGAGGAAAAGCTGTCTTCATCGGGCTTACAGCAGCCGGTGCAATTGGGGAAGTAGATATTAACCGTCTTGTTCGTAGAAAGATAAAAATCATTGGATCATACGGAGGAAGGGCAAGGCAGGATCTTCCAAAGATAGTCAGACTAGCAGAAAGTGGTATATTTGATCTCACTAGTGCTGTTTCAAGAAGATACAAATTCGAGGAGTCTGACACTGCATTCCAGGATCTCAACCAGGGAAAAATTGTTGGTCGGGCAGTGGTTGAGATAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

440

Amino Acids

47.16

Weight (kDa)

8.76

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	93 - 228	6.6e-23	Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C	PF16912	251 - 427	7e-07	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	269 - 400	2.4e-33	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	302 - 437	2.2e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021355)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131191
rosa_rugosa	Rorug02G0295600
rosa_samantha	Rh2AG348300 Rh2BG355800 Rh2DG373600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	923
AatII	GACGTC	1 cut(s)	113
Acc65I	GGTACC	1 cut(s)	488
AccB1I	GGYRCC	2 cut(s)	488, 845
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	615
AciI	CCGC	6 cut(s)	13, 93, 414, 595, 758, 929
AclWI	GGATC	7 cut(s)	4, 460, 807, 820, 1153, 1179, 1281
AcsI	RAATTY	3 cut(s)	254, 285, 1244
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	5 cut(s)	82, 106, 490, 647, 657
AfiI	CCNNNNNNNGG	3 cut(s)	222, 278, 665
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	6 cut(s)	251, 340, 507, 875, 950, 1233
AhlI	ACTAGT	2 cut(s)	101, 1220
AjnI	CCWGG	4 cut(s)	772, 1002, 1269, 1281
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	6 cut(s)	174, 349, 470, 819, 896, 1061
AluI	AGCT	6 cut(s)	174, 349, 470, 819, 896, 1061
AlwI	GGATC	7 cut(s)	4, 460, 807, 820, 1153, 1179, 1281
AlwNI	CAGNNNCTG	1 cut(s)	707
AoxI	GGCC	3 cut(s)	303, 511, 634
ApeKI	GCWGC	6 cut(s)	168, 171, 193, 212, 597, 1082
ApoI	RAATTY	3 cut(s)	254, 285, 1244
Asp700I	GAANNNNTTC	1 cut(s)	34
Asp718I	GGTACC	1 cut(s)	488
AspS9I	GGNCC	2 cut(s)	410, 511
AsuHPI	GGTGA	4 cut(s)	293, 356, 404, 587
AsuNHI	GCTAGC	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	812
BanI	GGYRCC	2 cut(s)	488, 845
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	3 cut(s)	37, 211, 1057
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	6 cut(s)	180, 180, 183, 224, 609, 1094
BccI	CCATC	3 cut(s)	29, 566, 1043
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	6 cut(s)	4, 38, 673, 707, 842, 876
BciT130I	CCWGG	4 cut(s)	774, 1004, 1271, 1283
BclI	TGATCA	1 cut(s)	127
BcuI	ACTAGT	2 cut(s)	101, 1220
BfaI	CTAG	4 cut(s)	102, 360, 1193, 1221
BfmI	CTRYAG	3 cut(s)	417, 824, 887
BisI	GCNGC	8 cut(s)	169, 172, 194, 213, 598, 759, 930, 1083
BlsI	GCNGC	8 cut(s)	170, 173, 195, 214, 599, 760, 931, 1084
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	4 cut(s)	774, 1004, 1271, 1283
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	410, 511
BmiI	GGNNCC	6 cut(s)	228, 412, 490, 562, 814, 847
BmrFI	CCNGG	4 cut(s)	774, 1004, 1271, 1283
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	1 cut(s)	931
BmtI	GCTAGC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	3 cut(s)	37, 211, 1057
Bpu10I	CCTNAGC	1 cut(s)	762
BsaBI	GATNNNNATC	2 cut(s)	8, 1136
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	6 cut(s)	139, 300, 773, 1002, 1003, 1282
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 278, 665
Bse118I	RCCGGY	1 cut(s)	1085
Bse1I	ACTGG	3 cut(s)	394, 805, 973
Bse3DI	GCAATG	2 cut(s)	689, 1034
Bse8I	GATNNNNATC	2 cut(s)	8, 1136
BseBI	CCWGG	4 cut(s)	774, 1004, 1271, 1283
BseDI	CCNNGG	6 cut(s)	139, 300, 773, 1002, 1003, 1282
BseGI	GGATG	2 cut(s)	261, 725
BseJI	GATNNNNATC	2 cut(s)	8, 1136
BseLI	CCNNNNNNNGG	3 cut(s)	222, 278, 665
BseMI	GCAATG	2 cut(s)	689, 1034
BseMII	CTCAG	2 cut(s)	633, 753
BseNI	ACTGG	3 cut(s)	394, 805, 973
BseRI	GAGGAG	4 cut(s)	172, 175, 178, 1265
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	6 cut(s)	180, 180, 183, 224, 609, 1094
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	3 cut(s)	305, 513, 636
BshNI	GGYRCC	2 cut(s)	488, 845
BsiSI	CCGG	2 cut(s)	279, 1086
BslI	CCNNNNNNNGG	3 cut(s)	222, 278, 665
BsmI	GAATGC	1 cut(s)	1265
BsnI	GGCC	3 cut(s)	305, 513, 636
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	6 cut(s)	13, 93, 414, 595, 758, 929
BspANI	GGCC	3 cut(s)	305, 513, 636
BspCNI	CTCAG	2 cut(s)	634, 754
BspLI	GGNNCC	6 cut(s)	228, 412, 490, 562, 814, 847
BspMAI	CTGCAG	2 cut(s)	828, 891
BspOI	GCTAGC	1 cut(s)	363
BspPI	GGATC	7 cut(s)	4, 460, 807, 820, 1153, 1179, 1281
BspT107I	GGYRCC	2 cut(s)	488, 845
BsrDI	GCAATG	2 cut(s)	689, 1034
BsrFI	RCCGGY	1 cut(s)	1085
BsrI	ACTGG	3 cut(s)	394, 805, 973
BssAI	RCCGGY	1 cut(s)	1085
BssECI	CCNNGG	6 cut(s)	139, 300, 773, 1002, 1003, 1282
BssNAI	GTATAC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	110
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	139, 300
Bst1107I	GTATAC	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	4 cut(s)	774, 1004, 1271, 1283
Bst4CI	ACNGT	3 cut(s)	551, 650, 1115
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	110
BstAPI	GCANNNNNTGC	2 cut(s)	845, 1088
BstC8I	GCNNGC	2 cut(s)	361, 1034
BstDEI	CTNAG	3 cut(s)	642, 762, 897
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	261, 725
BstMWI	GCNNNNNNNGC	6 cut(s)	743, 758, 845, 998, 1033, 1088
BstNI	CCWGG	4 cut(s)	774, 1004, 1271, 1283
BstNSI	RCATGY	2 cut(s)	622, 758
BstSCI	CCNGG	4 cut(s)	772, 1002, 1269, 1281
BstSFI	CTRYAG	3 cut(s)	417, 824, 887
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	6 cut(s)	180, 180, 183, 224, 609, 1094
BstV2I	GAAGAC	3 cut(s)	37, 211, 1057
BstX2I	RGATCY	4 cut(s)	452, 812, 1171, 1273
BstYI	RGATCY	4 cut(s)	452, 812, 1171, 1273
BstZ17I	GTATAC	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	305, 513, 636
BtgI	CCRYGG	1 cut(s)	139
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	261, 725
BtsI	GCAGTG	4 cut(s)	22, 607, 1260, 1311
BtsIMutI	CAGTG	4 cut(s)	22, 607, 1260, 1311
Cac8I	GCNNGC	2 cut(s)	361, 1034
CaiI	CAGNNNCTG	1 cut(s)	707
Cfr10I	RCCGGY	1 cut(s)	1085
Cfr13I	GGNCC	2 cut(s)	410, 511
Csp6I	GTAC	5 cut(s)	81, 105, 489, 646, 656
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	8 cut(s)	140, 205, 332, 407, 478, 619, 755, 917
CviQI	GTAC	5 cut(s)	81, 105, 489, 646, 656
DdeI	CTNAG	3 cut(s)	642, 762, 897
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	139, 300
Eco147I	AGGCCT	2 cut(s)	305, 636
Eco47I	GGWCC	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	4 cut(s)	772, 1002, 1269, 1281
EcoT14I	CCWWGG	2 cut(s)	139, 300
ErhI	CCWWGG	2 cut(s)	139, 300
FaeI	CATG	8 cut(s)	143, 208, 335, 410, 481, 622, 758, 920
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	8 cut(s)	139, 204, 331, 406, 477, 618, 754, 916
FauI	CCCGC	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	8 cut(s)	169, 172, 194, 213, 598, 759, 930, 1083
FokI	GGATG	2 cut(s)	248, 732
Fsp4HI	GCNGC	8 cut(s)	169, 172, 194, 213, 598, 759, 930, 1083
FspBI	CTAG	4 cut(s)	102, 360, 1193, 1221
GluI	GCNGC	8 cut(s)	169, 172, 194, 213, 598, 759, 930, 1083
HaeIII	GGCC	3 cut(s)	305, 513, 636
HapII	CCGG	2 cut(s)	279, 1086
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	8 cut(s)	143, 208, 335, 410, 481, 622, 758, 920
HinfI	GANTC	5 cut(s)	145, 312, 704, 779, 1253
HpaII	CCGG	2 cut(s)	279, 1086
HphI	GGTGA	4 cut(s)	293, 356, 404, 587
Hpy166II	GTNNAC	2 cut(s)	616, 985
Hpy188I	TCNGA	5 cut(s)	153, 325, 853, 1190, 1258
Hpy188III	TCNNGA	2 cut(s)	875, 1233
Hpy8I	GTNNAC	2 cut(s)	616, 985
Hpy99I	CGWCG	3 cut(s)	112, 115, 521
HpyAV	CCTTC	3 cut(s)	207, 334, 1152
HpyCH4III	ACNGT	3 cut(s)	551, 650, 1115
HpyCH4IV	ACGT	2 cut(s)	110, 987
HpyCH4V	TGCA	8 cut(s)	725, 826, 863, 889, 1027, 1032, 1091, 1265
HpyF10VI	GCNNNNNNNGC	6 cut(s)	743, 758, 845, 998, 1033, 1088
HpyF3I	CTNAG	3 cut(s)	642, 762, 897
HpySE526I	ACGT	2 cut(s)	110, 987
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	8 cut(s)	143, 208, 335, 410, 481, 622, 758, 920
KpnI	GGTACC	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	127
LmnI	GCTCC	2 cut(s)	165, 467
Lsp1109I	GCAGC	6 cut(s)	180, 180, 183, 224, 609, 1094
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	4 cut(s)	102, 360, 1193, 1221
MaeII	ACGT	2 cut(s)	110, 987
MfeI	CAATTG	1 cut(s)	1092
MflI	RGATCY	4 cut(s)	452, 812, 1171, 1273
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	5 cut(s)	254, 285, 1092, 1244, 1290
MlyI	GAGTC	3 cut(s)	321, 713, 1262
MmeI	TCCRAC	2 cut(s)	445, 790
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	1110
MspA1I	CMGCKG	1 cut(s)	819
MspI	CCGG	2 cut(s)	279, 1086
MspR9I	CCNGG	4 cut(s)	774, 1004, 1271, 1283
MunI	CAATTG	1 cut(s)	1092
Mva1269I	GAATGC	1 cut(s)	1265
MvaI	CCWGG	4 cut(s)	774, 1004, 1271, 1283
MwoI	GCNNNNNNNGC	6 cut(s)	743, 758, 845, 998, 1033, 1088
NcoI	CCATGG	1 cut(s)	139
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	8 cut(s)	143, 208, 335, 410, 481, 622, 758, 920
NlaIV	GGNNCC	6 cut(s)	228, 412, 490, 562, 814, 847
NspI	RCATGY	2 cut(s)	622, 758
PasI	CCCWGGG	1 cut(s)	1003
PceI	AGGCCT	2 cut(s)	305, 636
PciI	ACATGT	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	1 cut(s)	1265
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	145, 779
PflMI	CCANNNNNTGG	1 cut(s)	665
PfoI	TCCNGGA	1 cut(s)	1269
PkrI	GCNGC	8 cut(s)	170, 173, 195, 214, 599, 760, 931, 1084
PleI	GAGTC	3 cut(s)	320, 712, 1261
PpsI	GAGTC	3 cut(s)	320, 712, 1261
PscI	ACATGT	1 cut(s)	618
PsiI	TTATAA	1 cut(s)	923
Psp6I	CCWGG	4 cut(s)	772, 1002, 1269, 1281
PspGI	CCWGG	4 cut(s)	772, 1002, 1269, 1281
PspN4I	GGNNCC	6 cut(s)	228, 412, 490, 562, 814, 847
PspPI	GGNCC	2 cut(s)	410, 511
PstI	CTGCAG	2 cut(s)	828, 891
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	4 cut(s)	452, 812, 1171, 1273
PvuII	CAGCTG	1 cut(s)	819
RsaI	GTAC	5 cut(s)	82, 106, 490, 647, 657
RsaNI	GTAC	5 cut(s)	81, 105, 489, 646, 656
SaqAI	TTAA	1 cut(s)	1110
SatI	GCNGC	8 cut(s)	169, 172, 194, 213, 598, 759, 930, 1083
Sau96I	GGNCC	2 cut(s)	410, 511
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	3 cut(s)	321, 713, 1262
ScrFI	CCNGG	4 cut(s)	774, 1004, 1271, 1283
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	931
SfcI	CTRYAG	3 cut(s)	417, 824, 887
SinI	GGWCC	1 cut(s)	410
SpeI	ACTAGT	2 cut(s)	101, 1220
Sse9I	AATT	5 cut(s)	254, 285, 1092, 1244, 1290
SseBI	AGGCCT	2 cut(s)	305, 636
SsiI	CCGC	6 cut(s)	13, 93, 414, 595, 758, 929
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	4 cut(s)	102, 360, 1193, 1221
StuI	AGGCCT	2 cut(s)	305, 636
StyD4I	CCNGG	4 cut(s)	772, 1002, 1269, 1281
StyI	CCWWGG	2 cut(s)	139, 300
TaaI	ACNGT	3 cut(s)	551, 650, 1115
TaiI	ACGT	2 cut(s)	113, 990
TaqI	TCGA	2 cut(s)	402, 1248
TasI	AATT	5 cut(s)	254, 285, 1092, 1244, 1290
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	2 cut(s)	761, 932
TfiI	GAWTC	2 cut(s)	145, 779
Tru1I	TTAA	1 cut(s)	1110
Tru9I	TTAA	1 cut(s)	1110
TscAI	CASTG	4 cut(s)	22, 607, 1267, 1311
TseI	GCWGC	6 cut(s)	168, 171, 193, 212, 597, 1082
TspDTI	ATGAA	2 cut(s)	48, 1057
TspGWI	ACGGA	1 cut(s)	1167
TspRI	CASTG	4 cut(s)	22, 607, 1267, 1311
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	3 cut(s)	254, 285, 1244
XceI	RCATGY	2 cut(s)	622, 758
XmiI	GTMKAC	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	4 cut(s)	102, 360, 1193, 1221
ZraI	GACGTC	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.