Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0021355

Physical Location & Seq

Genomic Coordinates Forward (+)

53144019 .. 53144337

Gene Structure 319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG373600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTTCGAAGAATTTCAGTGTTATGATGACAACTATATGTGTGCCTCACTTCAACAGTTTGCCTCAGACAGAGGGGTGCCAGAATGGGGATCATCTATTCCGGATGAGAAGGAGTTTTTGTCAAACGCTGGTTGGAAGACAGAGCATGGGAGATTTTTCCTGGAATGGTACTCTGGTATTCTTGTGTCCCATGCAGAATGCATTTTGAGGCAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

72

Amino Acids

8.4

Weight (kDa)

4.48

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	4 - 70	2.1e-07	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021355)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131191
rosa_rugosa	Rorug02G0295600
rosa_samantha	Rh2AG348300 Rh2BG355800 Rh2DG373600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	100
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	11
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	159
AlwI	GGATC	1 cut(s)	97
Aor13HI	TCCGGA	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	12
AsuII	TTCGAA	1 cut(s)	6
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BanI	GGYRCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	6
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	77
BspEI	TCCGGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	76
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	2 cut(s)	146, 191
CviJI	RGCY	1 cut(s)	215
CviKI_1	RGCY	1 cut(s)	215
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	203
FaeI	CATG	2 cut(s)	149, 194
FaiI	YATR	5 cut(s)	24, 36, 38, 147, 192
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	2 cut(s)	145, 190
FokI	GGATG	1 cut(s)	116
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	149, 194
HpaII	CCGG	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	194, 201
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	149, 194
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	89
LpnPI	CCDG	6 cut(s)	93, 114, 114, 146, 159, 173
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	20, 148
MluCI	AATT	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	55, 65, 73, 201
Mph1103I	ATGCAT	1 cut(s)	203
MroI	TCCGGA	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	12
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	149, 194
NlaIV	GGNNCC	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	203
NspV	TTCGAA	1 cut(s)	6
PctI	GAATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	12
PfoI	TCCNGGA	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	161
SfuI	TTCGAA	1 cut(s)	6
SgeI	CNNG	9 cut(s)	92, 113, 141, 158, 172, 173, 186, 194, 203
Sse9I	AATT	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	11
TscAI	CASTG	1 cut(s)	23
TspRI	CASTG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.