Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0021355

Physical Location & Seq

Genomic Coordinates Forward (+)

51162894 .. 51163460

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG348300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATCGCCTTCACAAATAGGTTTAAGAACTTCTTCGGTGATGTTTTCCAGGATGTGCAAATCAGTCTTGGGCTCGACGATGAGCTGAAGTTTCCATCTGGCCAAGATGACTCCGTGTGCGAAGAATTTCAGTGTTATGACAACTACATGTGTGCCTCACTTCAACAGTTTGCCTCGGACAGATGGGTGCCGGAATGGAGATCATCTATTCCGGATGAGAAGGAGTTTTTGTCAAACGCTGGCTGGAAGACAGAGCATGGGAGATTTTTCCTGGAATGGTACTCTGGTATTGTTGTGTCCCATGCAGAATGCATTTTGAGGCAAGCCCAACATTGTCTGTCTCATGTTGGAATTTCAGCAAAACACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

123

Amino Acids

14.31

Weight (kDa)

4.92

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 117	1.8e-13	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021355)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131191
rosa_rugosa	Rorug02G0295600
rosa_samantha	Rh2AG348300 Rh2BG355800 Rh2DG373600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	125, 351
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	48, 270
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	345
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	125, 351
Asp700I	GAANNNNTTC	2 cut(s)	32, 126
AsuHPI	GGTGA	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	271, 304
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	2 cut(s)	103, 177
BciT130I	CCWGG	2 cut(s)	50, 272
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	50, 272
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	50, 272
BpiI	GAAGAC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	50, 272
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	58, 220
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	191, 212
BslFI	GGGAC	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	3, 200
BspANI	GGCC	1 cut(s)	102
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	3, 200
Bst2UI	CCWGG	2 cut(s)	50, 272
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	241, 324
BstF5I	GGATG	2 cut(s)	58, 220
BstKTI	GATC	2 cut(s)	6, 203
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	2 cut(s)	3, 200
BstNI	CCWGG	2 cut(s)	50, 272
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	48, 270
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	58, 220
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	241, 324
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	148, 257, 302, 344
CviJI	RGCY	5 cut(s)	73, 85, 102, 243, 326
CviKI_1	RGCY	5 cut(s)	73, 85, 102, 243, 326
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	2 cut(s)	5, 202
DpnII	GATC	2 cut(s)	3, 200
EaeI	YGGCCR	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	48, 270
EcoT22I	ATGCAT	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	4 cut(s)	151, 260, 305, 347
FaiI	YATR	5 cut(s)	138, 149, 258, 303, 345
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	4 cut(s)	147, 256, 301, 343
FokI	GGATG	2 cut(s)	65, 227
FriOI	GRGCYC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	191, 212
Hin1II	CATG	4 cut(s)	151, 260, 305, 347
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	191, 212
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	212
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	19, 214
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	58, 305, 312
Hsp92II	CATG	4 cut(s)	151, 260, 305, 347
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	3, 200
MaeI	CTAG	1 cut(s)	370
MalI	GATC	2 cut(s)	5, 202
MboI	GATC	2 cut(s)	3, 200
MboII	GAAGA	3 cut(s)	25, 134, 259
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	2 cut(s)	125, 351
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	3 cut(s)	166, 184, 312
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	314
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	2 cut(s)	32, 126
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	191, 212
MspR9I	CCNGG	2 cut(s)	50, 272
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	2 cut(s)	50, 272
NdeII	GATC	2 cut(s)	3, 200
NlaIII	CATG	4 cut(s)	151, 260, 305, 347
NlaIV	GGNNCC	1 cut(s)	189
NsiI	ATGCAT	1 cut(s)	314
NspI	RCATGY	1 cut(s)	151
PciI	ACATGT	1 cut(s)	147
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	2 cut(s)	32, 126
PfoI	TCCNGGA	2 cut(s)	48, 270
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PscI	ACATGT	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	48, 270
PspGI	CCWGG	2 cut(s)	48, 270
PspN4I	GGNNCC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	3, 200
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	50, 272
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	2 cut(s)	23, 87
Sse9I	AATT	2 cut(s)	125, 351
SspMI	CTAG	1 cut(s)	370
StyD4I	CCNGG	2 cut(s)	48, 270
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	125, 351
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	137
XapI	RAATTY	2 cut(s)	125, 351
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	2 cut(s)	32, 126
XspI	CTAG	1 cut(s)	370
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.