Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021355

Physical Location & Seq

Genomic Coordinates Forward (+)

48851347 .. 48871405

Gene Structure 20059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG355800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATCGCCTTCACAAATAGGTTTAAGAACTTCTTCGGTGTTGTTATCCAGGATGTGCAAATCAGTCTTGGGCCCGACGGTGAGCTGAAGTTTCCGTCTGGCCAAGATGACTCCATGTGCGGAGAATTTCAGTGTTATGACAACTACATGTGTGCCTCACTTCAACAATTTGCCTCAGACAGAGGGGTGCCAGAATGGGGATCATCTATTCCGGATGAGAAGGAGTTTTTGTCAAACGCTGGCTGGAAGACAGAGCATGGGAGATTTTTCCTGGAATGGTACTCTGCTACCACACCCAAACAAGTGAAACAACATCACAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000024 GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009251 GO:0009266 GO:0009311 GO:0009312 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0016051 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0034637 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0050896 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

108

Amino Acids

12.35

Weight (kDa)

5.0

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 101	1.8e-15	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021355)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131191
rosa_rugosa	Rorug02G0295600
rosa_samantha	Rh2AG348300 Rh2BG355800 Rh2DG373600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	48, 270
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
AlwI	GGATC	1 cut(s)	208
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	2 cut(s)	71, 100
ApaI	GGGCCC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	71, 72
AsuHPI	GGTGA	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	254
BciT130I	CCWGG	2 cut(s)	50, 272
Bme1390I	CCNGG	2 cut(s)	50, 272
BmgT120I	GGNCC	2 cut(s)	71, 72
BmiI	GGNNCC	2 cut(s)	73, 189
BmrFI	CCNGG	2 cut(s)	50, 272
BpiI	GAAGAC	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	50, 272
BseGI	GGATG	2 cut(s)	58, 220
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	75
BshFI	GGCC	2 cut(s)	73, 102
BshNI	GGYRCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	197
BsnI	GGCC	2 cut(s)	73, 102
Bsp120I	GGGCCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	3, 200
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	73, 102
BspCNI	CTCAG	1 cut(s)	188
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	73, 189
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	187
BssMI	GATC	2 cut(s)	3, 200
Bst2UI	CCWGG	2 cut(s)	50, 272
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	2 cut(s)	58, 220
BstKTI	GATC	2 cut(s)	6, 203
BstMBI	GATC	2 cut(s)	3, 200
BstNI	CCWGG	2 cut(s)	50, 272
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	48, 270
BstSLI	GKGCMC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	73, 102
BtsCI	GGATG	2 cut(s)	58, 220
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	71, 72
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	115, 148, 257, 324
CviJI	RGCY	4 cut(s)	73, 85, 102, 243
CviKI_1	RGCY	4 cut(s)	73, 85, 102, 243
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	2 cut(s)	5, 202
DpnII	GATC	2 cut(s)	3, 200
EaeI	YGGCCR	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	48, 270
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	4 cut(s)	118, 151, 260, 327
FaiI	YATR	5 cut(s)	116, 138, 149, 258, 325
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	4 cut(s)	114, 147, 256, 323
FokI	GGATG	2 cut(s)	65, 227
FriOI	GRGCYC	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	73, 102
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	4 cut(s)	118, 151, 260, 327
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	212
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	19, 214
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	118, 151, 260, 327
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	3, 200
LpnPI	CCDG	9 cut(s)	35, 62, 84, 204, 225, 225, 229, 257, 284
MalI	GATC	2 cut(s)	5, 202
MboI	GATC	2 cut(s)	3, 200
MboII	GAAGA	2 cut(s)	25, 259
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	2 cut(s)	125, 167
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	3 cut(s)	166, 176, 184
Mox20I	TGGCCA	1 cut(s)	102
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	50, 272
MvaI	CCWGG	2 cut(s)	50, 272
NdeII	GATC	2 cut(s)	3, 200
NlaIII	CATG	4 cut(s)	118, 151, 260, 327
NlaIV	GGNNCC	2 cut(s)	73, 189
NspI	RCATGY	1 cut(s)	151
PciI	ACATGT	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	32
PfoI	TCCNGGA	2 cut(s)	48, 270
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PscI	ACATGT	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	48, 270
PspGI	CCWGG	2 cut(s)	48, 270
PspN4I	GGNNCC	2 cut(s)	73, 189
PspOMI	GGGCCC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	71, 72
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	3, 200
Sau96I	GGNCC	2 cut(s)	71, 72
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	50, 272
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	2 cut(s)	23, 87
Sse9I	AATT	2 cut(s)	125, 167
SsiI	CCGC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	48, 270
TaaI	ACNGT	1 cut(s)	80
TasI	AATT	2 cut(s)	125, 167
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.