Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015280

Physical Location & Seq

Genomic Coordinates Reverse (-)

35721133 .. 35722659

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0310600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGAATCAAGCCATGCTTGCTAAGGCTAGCTGGAGGATCTCTCAAAAGGATACTGGACTTTGGGCCTCTATGTATGCTGCAAAGTATTTGCAAGGCTCCAATATTACTGATGAAAGCTATAAACCCCCTCCTGATTGTTCCAGTACTTGGAGAAGCATCTCTCATGGTGCTGTGTTGTTGAGAAAATGTTTAAAATGGAGTATTGGGGAGGGCATTTCTATTAGGTTTTGGCTGGATCTTTGGCTTCTCCCTACACCTCTTATAAATTTAGCTCTTCCTTCAGCTGATATAAATATCAATGCAACCATCAATGACTTGTGGACTGAGTCAGGCTGGAACTTGGATCTTCTCTTCTCCATGGGAGCCACTTCCAATGGTTGCTTCACTGTCAAGTCTGCATATAATTCGAATTTTGATTTTCTCAATCTCCAAAATCCTCAATGGATTGCTGCTTGGAAATGTGATATTCCTCCTAAGTTGAAAACTTTTCTCTGGACTGTTCTCCATAGGAAGCTTTTAACTAATGTTCAAAGAACCAGAAGAGGCTTTACCTTGACAGCCACATGTCCTATTTGCAATGCTGCTGATGAAACTCTTCTTCACTTGCTCAGAGACTGTCCTAGATCCCTTGCTATCTGGAAAGCTTTTCTTAAGCCTGGTACTATTCTCAACTCTTTCTCTCTTGACTGGAATGGTTGGATTGCTGCTCAATTGCATTGCCAAACTTTGATTCAGAAAAACATTAAATGGTGCAATCTCTTTGTCTTTATCTGTTGGTTTATCTGGAAATGGAGGAATAAGTTTGTCTTTGATCCCAGTTTTACCATGCCTTTCTGTCCGGATAAAGTGATTTGGAATTATGCTGAGGAGTGGATTGGGGCTAATCTCAAAATGAATGCTGATACAGTTTATAGATACACTTTTCTAGCTTGGAAAATACCTATGGAAAATTTTTGCAAGTTAAACATTGATGGGACTAGAACCTCCTCTACTGGGAAAATCGGTGCTGGGGGTGTTATAAGAGATCATCTTGGCAATTGGATTTCTGGTTTCCAAATCAACTTAGGATCTGGGGAAATTTTAGATGCTGAGGCCTGGGGCTTATTCTATGGGCTCAGACTTGCTCTAAGCTGTCGCATCTCTAAGCTTGAAGTGGAATCTGACTCTGCTATCCTTGTGCAGCTGATGCAGAAAGCTGATTTCTCTCTTCACCCCCTTGGTTCCCTTCTAAAGGGCTGCTCTAATATGATGATGACTATGGAGAATGAACACCTAACCCATATCTTCAGGGAATGCAATATGACGGCTGATTCTTTAGCGAAAGATAGTATTAATCACGAGCTTGGCCTTATCACTTTTGAGAATCCGCCTATCCATGTTGCTCAGGCATATCTTGATGATATTTCTGCTGTTTCTAGAGCCAGGAGAAGCTCTTGCTTTAGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0010143 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0043170 GO:0044550 GO:0052722 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00460 ko00500 ko00591 ko00830 ko00940 ko00980 ko00982 ko01100 ko01110 ko05204 map00140 map00232 map00380 map00460 map00500 map00591 map00830 map00940 map00980 map00982 map01100 map01110 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

482

Amino Acids

54.71

Weight (kDa)

8.51

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	128 - 213	2.3e-18	zinc-binding in reverse transcriptase
RVT_3	PF13456	322 - 442	7.4e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11600
fragaria_vesca	FvH4_6g28770
malus_domestica	MD01G1175700.v1.1 MD07G1246400.v1.1
prunus_persica	Prupe.7G219700_v2.0.a1 Prupe.7G219700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133181
rosa_laevigata	RLG00000019319
rosa_multiflora	Rmu_sc0028113.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111330
rosa_rugosa	Rorug02G0310600
rosa_samantha	Rh2AG363000 Rh2BG368500 Rh2CG346300 Rh2DG385600
rosa_wichuraiana	Rw2G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	263, 1019
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	1 cut(s)	1367
AclWI	GGATC	6 cut(s)	44, 243, 351, 618, 806, 1075
AcsI	RAATTY	4 cut(s)	265, 409, 949, 1077
AcuI	CTGAAG	2 cut(s)	264, 1270
AfaI	GTAC	2 cut(s)	145, 661
AfiI	CCNNNNNNNGG	3 cut(s)	147, 993, 1231
AflII	CTTAAG	1 cut(s)	650
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	3 cut(s)	481, 530, 1151
AjnI	CCWGG	3 cut(s)	655, 1094, 1421
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 397, 714, 746
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	6 cut(s)	44, 243, 351, 618, 806, 1075
AlwNI	CAGNNNCTG	1 cut(s)	615
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	3 cut(s)	63, 1092, 1345
ApeKI	GCWGC	6 cut(s)	77, 449, 581, 704, 1180, 1236
ApoI	RAATTY	4 cut(s)	265, 409, 949, 1077
AseI	ATTAAT	1 cut(s)	1332
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	1202
AsuII	TTCGAA	1 cut(s)	407
AsuNHI	GCTAGC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	1116
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
BauI	CACGAG	1 cut(s)	1337
BbvCI	CCTCAGC	2 cut(s)	864, 1089
BbvI	GCAGC	6 cut(s)	64, 436, 568, 691, 1192, 1223
BccI	CCATC	2 cut(s)	314, 965
BceAI	ACGGC	1 cut(s)	1320
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	3 cut(s)	657, 1096, 1423
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	6 cut(s)	27, 621, 926, 978, 1416, 1447
BfrI	CTTAAG	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	43
BisI	GCNGC	6 cut(s)	78, 450, 582, 705, 1181, 1237
BlsI	GCNGC	6 cut(s)	79, 451, 583, 706, 1182, 1238
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	3 cut(s)	657, 1096, 1423
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	3 cut(s)	97, 364, 1222
BmrFI	CCNGG	3 cut(s)	657, 1096, 1423
BmrI	ACTGGG	2 cut(s)	810, 1002
BmsI	GCATC	4 cut(s)	165, 1075, 1146, 1176
BmtI	GCTAGC	1 cut(s)	30
BmuI	ACTGGG	2 cut(s)	810, 1002
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	52
Bpu10I	CCTNAGC	4 cut(s)	21, 864, 1089, 1383
Bpu14I	TTCGAA	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	357, 1095, 1216
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 993, 1231
Bse1I	ACTGG	5 cut(s)	58, 141, 692, 816, 997
Bse3DI	GCAATG	2 cut(s)	583, 715
BseAI	TCCGGA	1 cut(s)	838
BseBI	CCWGG	3 cut(s)	657, 1096, 1423
BseDI	CCNNGG	3 cut(s)	357, 1095, 1216
BseLI	CCNNNNNNNGG	3 cut(s)	147, 993, 1231
BseMI	GCAATG	2 cut(s)	583, 715
BseMII	CTCAG	6 cut(s)	315, 622, 855, 1080, 1129, 1397
BseNI	ACTGG	5 cut(s)	58, 141, 692, 816, 997
BseRI	GAGGAG	2 cut(s)	881, 976
BseXI	GCAGC	6 cut(s)	64, 436, 568, 691, 1192, 1223
BseYI	CCCAGC	1 cut(s)	1007
BsgI	GTGCAG	1 cut(s)	1199
BshFI	GGCC	3 cut(s)	65, 1094, 1347
BsiSI	CCGG	1 cut(s)	839
BslFI	GGGAC	1 cut(s)	988
BslI	CCNNNNNNNGG	3 cut(s)	147, 993, 1231
BsmAI	GTCTC	1 cut(s)	606
BsmFI	GGGAC	1 cut(s)	988
BsmI	GAATGC	2 cut(s)	901, 1298
BsnI	GGCC	3 cut(s)	65, 1094, 1347
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	1116
Bsp13I	TCCGGA	1 cut(s)	838
Bsp143I	GATC	7 cut(s)	36, 235, 343, 623, 811, 1024, 1067
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	1 cut(s)	1367
BspANI	GGCC	3 cut(s)	65, 1094, 1347
BspCNI	CTCAG	6 cut(s)	316, 621, 856, 1081, 1128, 1396
BspEI	TCCGGA	1 cut(s)	838
BspLI	GGNNCC	3 cut(s)	97, 364, 1222
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	6 cut(s)	44, 243, 351, 618, 806, 1075
BspQI	GCTCTTC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	407
BspTI	CTTAAG	1 cut(s)	650
BsrDI	GCAATG	2 cut(s)	583, 715
BsrI	ACTGG	5 cut(s)	58, 141, 692, 816, 997
BssECI	CCNNGG	3 cut(s)	357, 1095, 1216
BssMI	GATC	7 cut(s)	36, 235, 343, 623, 811, 1024, 1067
BssSI	CACGAG	1 cut(s)	1337
BssT1I	CCWWGG	2 cut(s)	357, 1216
Bst2BI	CACGAG	1 cut(s)	1337
Bst2UI	CCWGG	3 cut(s)	657, 1096, 1423
Bst4CI	ACNGT	4 cut(s)	388, 499, 617, 907
Bst6I	CTCTTC	5 cut(s)	279, 356, 535, 600, 1212
BstAFI	CTTAAG	1 cut(s)	650
BstAPI	GCANNNNNTGC	1 cut(s)	1186
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	18, 28
BstDSI	CCRYGG	1 cut(s)	357
BstENI	CCTNNNNNAGG	1 cut(s)	1229
BstKTI	GATC	7 cut(s)	39, 238, 346, 626, 814, 1027, 1070
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	7 cut(s)	36, 235, 343, 623, 811, 1024, 1067
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 1186
BstNI	CCWGG	3 cut(s)	657, 1096, 1423
BstNSI	RCATGY	1 cut(s)	567
BstSCI	CCNGG	3 cut(s)	655, 1094, 1421
BstV1I	GCAGC	6 cut(s)	64, 436, 568, 691, 1192, 1223
BstX2I	RGATCY	5 cut(s)	36, 235, 343, 623, 1067
BstYI	RGATCY	5 cut(s)	36, 235, 343, 623, 1067
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	65, 1094, 1347
BtgI	CCRYGG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	18, 28
CaiI	CAGNNNCTG	1 cut(s)	615
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	144, 660
CviAII	CATG	6 cut(s)	13, 164, 358, 564, 826, 1376
CviQI	GTAC	2 cut(s)	144, 660
DpnI	GATC	7 cut(s)	38, 237, 345, 625, 813, 1026, 1069
DpnII	GATC	7 cut(s)	36, 235, 343, 623, 811, 1024, 1067
DraI	TTTAAA	1 cut(s)	192
Eam1104I	CTCTTC	5 cut(s)	279, 356, 535, 600, 1212
EarI	CTCTTC	5 cut(s)	279, 356, 535, 600, 1212
EciI	GGCGGA	1 cut(s)	1356
Eco130I	CCWWGG	2 cut(s)	357, 1216
Eco147I	AGGCCT	1 cut(s)	1094
Eco24I	GRGCYC	1 cut(s)	1116
Eco57I	CTGAAG	2 cut(s)	264, 1270
EcoNI	CCTNNNNNAGG	1 cut(s)	1229
EcoRII	CCWGG	3 cut(s)	655, 1094, 1421
EcoT14I	CCWWGG	2 cut(s)	357, 1216
EcoT38I	GRGCYC	1 cut(s)	1116
ErhI	CCWWGG	2 cut(s)	357, 1216
FaeI	CATG	6 cut(s)	16, 167, 361, 567, 829, 1379
FalI	AAGNNNNNCTT	5 cut(s)	32, 633, 665, 791, 823
FaqI	GGGAC	1 cut(s)	988
FatI	CATG	6 cut(s)	12, 163, 357, 563, 825, 1375
Fnu4HI	GCNGC	6 cut(s)	78, 450, 582, 705, 1181, 1237
FriOI	GRGCYC	1 cut(s)	1116
Fsp4HI	GCNGC	6 cut(s)	78, 450, 582, 705, 1181, 1237
FspBI	CTAG	6 cut(s)	27, 621, 926, 978, 1416, 1447
GluI	GCNGC	6 cut(s)	78, 450, 582, 705, 1181, 1237
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	3 cut(s)	65, 1094, 1347
HapII	CCGG	1 cut(s)	839
Hin1II	CATG	6 cut(s)	16, 167, 361, 567, 829, 1379
HindIII	AAGCTT	3 cut(s)	512, 642, 1145
HinfI	GANTC	7 cut(s)	4, 326, 730, 1157, 1163, 1310, 1363
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	1 cut(s)	1202
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	4 cut(s)	611, 735, 1118, 1162
Hpy188III	TCNNGA	9 cut(s)	131, 493, 637, 683, 784, 839, 1337, 1394, 1416
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	2 cut(s)	288, 1235
HpyCH4III	ACNGT	4 cut(s)	388, 499, 617, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 1186
Hsp92II	CATG	6 cut(s)	16, 167, 361, 567, 829, 1379
Kpn2I	TCCGGA	1 cut(s)	838
Kzo9I	GATC	7 cut(s)	36, 235, 343, 623, 811, 1024, 1067
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	3 cut(s)	101, 362, 1448
Lsp1109I	GCAGC	6 cut(s)	64, 436, 568, 691, 1192, 1223
LweI	GCATC	4 cut(s)	165, 1075, 1146, 1176
MaeI	CTAG	6 cut(s)	27, 621, 926, 978, 1416, 1447
MalI	GATC	7 cut(s)	38, 237, 345, 625, 813, 1026, 1069
MboI	GATC	7 cut(s)	36, 235, 343, 623, 811, 1024, 1067
MboII	GAAGA	8 cut(s)	266, 338, 343, 552, 587, 590, 1199, 1276
MfeI	CAATTG	2 cut(s)	710, 1036
MflI	RGATCY	5 cut(s)	36, 235, 343, 623, 1067
MhlI	GDGCHC	1 cut(s)	1116
MluCI	AATT	8 cut(s)	265, 403, 409, 710, 856, 949, 1036, 1077
MlyI	GAGTC	2 cut(s)	335, 1157
MmeI	TCCRAC	1 cut(s)	677
MroI	TCCGGA	1 cut(s)	838
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	6 cut(s)	191, 518, 651, 744, 962, 1332
MspA1I	CMGCKG	2 cut(s)	284, 1183
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	3 cut(s)	657, 1096, 1423
MunI	CAATTG	2 cut(s)	710, 1036
Mva1269I	GAATGC	2 cut(s)	901, 1298
MvaI	CCWGG	3 cut(s)	657, 1096, 1423
MwoI	GCNNNNNNNGC	2 cut(s)	17, 1186
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	7 cut(s)	36, 235, 343, 623, 811, 1024, 1067
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	6 cut(s)	16, 167, 361, 567, 829, 1379
NlaIV	GGNNCC	3 cut(s)	97, 364, 1222
NspI	RCATGY	1 cut(s)	567
NspV	TTCGAA	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	1094
PciI	ACATGT	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	2 cut(s)	901, 1298
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	5 cut(s)	4, 730, 1157, 1310, 1363
PflFI	GACNNNGTC	1 cut(s)	325
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	6 cut(s)	79, 451, 583, 706, 1182, 1238
PleI	GAGTC	2 cut(s)	334, 1157
PpsI	GAGTC	2 cut(s)	334, 1157
PscI	ACATGT	1 cut(s)	563
PshBI	ATTAAT	1 cut(s)	1332
PsiI	TTATAA	2 cut(s)	263, 1019
Psp6I	CCWGG	3 cut(s)	655, 1094, 1421
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	3 cut(s)	655, 1094, 1421
PspN4I	GGNNCC	3 cut(s)	97, 364, 1222
PspPI	GGNCC	1 cut(s)	63
PsrI	GAACNNNNNNTAC	2 cut(s)	973, 1005
PstNI	CAGNNNCTG	1 cut(s)	615
PsuI	RGATCY	5 cut(s)	36, 235, 343, 623, 1067
PsyI	GACNNNGTC	1 cut(s)	325
PvuII	CAGCTG	2 cut(s)	284, 1183
RsaI	GTAC	2 cut(s)	145, 661
RsaNI	GTAC	2 cut(s)	144, 660
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	6 cut(s)	191, 518, 651, 744, 962, 1332
SatI	GCNGC	6 cut(s)	78, 450, 582, 705, 1181, 1237
Sau3AI	GATC	7 cut(s)	36, 235, 343, 623, 811, 1024, 1067
Sau96I	GGNCC	1 cut(s)	63
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	2 cut(s)	335, 1157
ScrFI	CCNGG	3 cut(s)	657, 1096, 1423
SduI	GDGCHC	1 cut(s)	1116
SfaNI	GCATC	4 cut(s)	165, 1075, 1146, 1176
SfuI	TTCGAA	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	8 cut(s)	265, 403, 409, 710, 856, 949, 1036, 1077
SseBI	AGGCCT	1 cut(s)	1094
SsiI	CCGC	1 cut(s)	1367
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	6 cut(s)	27, 621, 926, 978, 1416, 1447
StuI	AGGCCT	1 cut(s)	1094
StyD4I	CCNGG	3 cut(s)	655, 1094, 1421
StyI	CCWWGG	2 cut(s)	357, 1216
TaaI	ACNGT	4 cut(s)	388, 499, 617, 907
TaqI	TCGA	1 cut(s)	407
TasI	AATT	8 cut(s)	265, 403, 409, 710, 856, 949, 1036, 1077
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	5 cut(s)	4, 730, 1157, 1310, 1363
Tru1I	TTAA	6 cut(s)	191, 518, 651, 744, 962, 1332
Tru9I	TTAA	6 cut(s)	191, 518, 651, 744, 962, 1332
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	6 cut(s)	77, 449, 581, 704, 1180, 1236
TspDTI	ATGAA	5 cut(s)	17, 126, 603, 908, 1281
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	650
VspI	ATTAAT	1 cut(s)	1332
XagI	CCTNNNNNAGG	1 cut(s)	1229
XapI	RAATTY	4 cut(s)	265, 409, 949, 1077
XbaI	TCTAGA	1 cut(s)	1415
XceI	RCATGY	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	6 cut(s)	27, 621, 926, 978, 1416, 1447
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.