Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006206

Physical Location & Seq

Genomic Coordinates Reverse (-)

57083274 .. 57085438

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0444300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCAACTGAACCTGTAAATGTCAATGAATTCCAAGAATTGGCTAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGAACGGTTCACGCTAAAAGAGAATGTTGAAGCATTTCGCAGAATCATATTGAGGCCTAGAGTTCTGGCAGATGTTAGCAGGATCGATATGTCAACCACTGTATTGGGTTACAAAATCTCAGCGCCTATAATGATTGCTCCTACGGCATCAATGTTTGAATTGTGTCTACCTGCACTGTGGAGGAGGTTGCTTCGAGCTGAAATGCTGTTCGGTTCTTGCAATTATATAATGACAGCACCTCAGTTGAAAAACTTCGAAGACCTAATATCAACTGAACTAGACTCTGATGAAGGATCCAACTTGGAAGCTTTTGTCAGAGCGTCCTATGATGATTCTTTGTGCTGGGAGCTAGGCAAGGGTATACTCACTCATGAAGATGCAAGAAAGGCTGTGGAAGTTGGTGTTGCCAGGATTGTTGTCTCTAATCATGGACCTGGACAACTAGATTACACTCCGCCCACTATTTCTGTCCTGGAAGAGGTGGTTCAAGCTGTTGGAGGGAAAGTTCCTGTTCTTTTTTATGGAGGAATACGGCGAGGAACTGATGTCTTCAAGGCATTAGCCCTCGGTGCACAAGCCGTCCTTGTTGGAAGGCCTGTTATTGTCACGCCCCGAATTTTGAATAATCAATTCAAATCCGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

FancD2

Protein Analysis

247

Amino Acids

27.4

Weight (kDa)

5.39

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	15 - 82	2.2e-20	FMN-dependent dehydrogenase
FMN_dh	PF01070	151 - 234	2.5e-36	FMN-dependent dehydrogenase
NMO	PF03060	184 - 235	6.3e-06	Nitronate monooxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14970 AT4G14970 AT4G14970 AT4G14970 AT4G14970 AT4G14970
fragaria_vesca	FvH4_6g39900 FvH4_6g39900 FvH4_6g39900 FvH4_6g39900 FvH4_6g39900 FvH4_6g39900 FvH4_6g39900
malus_domestica	MD09G1135500.v1.1
prunus_persica	Prupe.3G191100_v2.0.a1 Prupe.3G191100_v2.0.a1
pyrus_communis	pycom09g05650
rosa_chinensis	RchiOBHm_Chr2g0154431
rosa_laevigata	RLG00000020777
rosa_multiflora	Rmu_sc0003808.1_g000011
rosa_roxburghii	Rroxscaffold_2G00094340
rosa_rugosa	Rorug02G0444300
rosa_samantha	Rh2AG508900 Rh2BG520100 Rh2CG494300 Rh2DG530500
rosa_wichuraiana	Rw2G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	274
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	2 cut(s)	262, 457
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	3 cut(s)	185, 384, 397
AcsI	RAATTY	2 cut(s)	29, 711
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	40, 574
AgsI	TTSAA	7 cut(s)	125, 254, 343, 584, 649, 718, 730
AjnI	CCWGG	3 cut(s)	503, 529, 567
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
AluBI	AGCT	5 cut(s)	92, 293, 404, 445, 587
AluI	AGCT	5 cut(s)	92, 293, 404, 445, 587
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	520
Alw44I	GTGCAC	1 cut(s)	666
AlwI	GGATC	3 cut(s)	185, 384, 397
AoxI	GGCC	2 cut(s)	149, 689
ApaLI	GTGCAC	1 cut(s)	666
ApoI	RAATTY	2 cut(s)	29, 711
Asp700I	GAANNNNTTC	2 cut(s)	129, 347
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	527
AsuII	TTCGAA	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	670
BamHI	GGATCC	1 cut(s)	389
BbsI	GAAGAC	2 cut(s)	360, 637
Bbv12I	GWGCWC	1 cut(s)	670
BbvCI	CCTCAGC	1 cut(s)	93
BceAI	ACGGC	3 cut(s)	255, 644, 659
BciT130I	CCWGG	3 cut(s)	505, 531, 569
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	4 cut(s)	153, 374, 446, 539
BfoI	RGCGCY	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	45
Bme1390I	CCNGG	3 cut(s)	505, 531, 569
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	3 cut(s)	505, 531, 569
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	2 cut(s)	251, 463
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	2 cut(s)	360, 637
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 574
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	3 cut(s)	505, 531, 569
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	661
BseLI	CCNNNNNNNGG	2 cut(s)	40, 574
BseMII	CTCAG	3 cut(s)	84, 228, 350
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	670
BseYI	CCCAGC	1 cut(s)	438
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	151, 691
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	670
BslI	CCNNNNNNNGG	2 cut(s)	40, 574
BsmAI	GTCTC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	151, 691
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	177, 389
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	2 cut(s)	151, 691
BspCNI	CTCAG	3 cut(s)	85, 227, 349
BspDI	ATCGAT	1 cut(s)	180
BspHI	TCATGA	2 cut(s)	466, 740
BspLI	GGNNCC	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	3 cut(s)	185, 384, 397
BspT104I	TTCGAA	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	2 cut(s)	177, 389
BssNAI	GTATAC	1 cut(s)	458
Bst1107I	GTATAC	1 cut(s)	458
Bst2UI	CCWGG	3 cut(s)	505, 531, 569
Bst4CI	ACNGT	3 cut(s)	102, 196, 273
Bst6I	CTCTTC	1 cut(s)	567
BstBI	TTCGAA	1 cut(s)	351
BstDEI	CTNAG	4 cut(s)	45, 93, 214, 336
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	180, 392
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	2 cut(s)	177, 389
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 482, 665
BstNI	CCWGG	3 cut(s)	505, 531, 569
BstSCI	CCNGG	3 cut(s)	503, 529, 567
BstSLI	GKGCMC	1 cut(s)	670
BstV2I	GAAGAC	2 cut(s)	360, 637
BstX2I	RGATCY	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	389
BstZ17I	GTATAC	1 cut(s)	458
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	151, 691
BsuTUI	ATCGAT	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	192, 269
BveI	ACCTGC	1 cut(s)	274
CciI	TCATGA	2 cut(s)	466, 740
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	527
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	3 cut(s)	467, 524, 741
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	4 cut(s)	45, 93, 214, 336
DpnI	GATC	2 cut(s)	179, 391
DpnII	GATC	2 cut(s)	177, 389
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	540
Eco147I	AGGCCT	2 cut(s)	151, 691
Eco47I	GGWCC	1 cut(s)	527
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	3 cut(s)	503, 529, 567
FaeI	CATG	3 cut(s)	470, 527, 744
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FatI	CATG	3 cut(s)	466, 523, 740
FblI	GTMKAC	2 cut(s)	262, 457
FspBI	CTAG	4 cut(s)	153, 374, 446, 539
GlaI	GCGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	442
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	151, 691
HgaI	GACGC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	470, 527, 744
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	4 cut(s)	138, 377, 428, 737
Hpy166II	GTNNAC	5 cut(s)	105, 189, 263, 458, 668
Hpy188I	TCNGA	3 cut(s)	382, 413, 736
Hpy188III	TCNNGA	2 cut(s)	467, 741
Hpy8I	GTNNAC	5 cut(s)	105, 189, 263, 458, 668
HpyAV	CCTTC	3 cut(s)	65, 380, 681
HpyCH4III	ACNGT	3 cut(s)	102, 196, 273
HpyCH4V	TGCA	4 cut(s)	269, 315, 476, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 482, 665
HpyF3I	CTNAG	4 cut(s)	45, 93, 214, 336
Hsp92II	CATG	3 cut(s)	470, 527, 744
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	177, 389
LmnI	GCTCC	3 cut(s)	89, 238, 442
LweI	GCATC	2 cut(s)	251, 463
MaeI	CTAG	4 cut(s)	153, 374, 446, 539
MaeIII	GTNAC	2 cut(s)	203, 700
MalI	GATC	2 cut(s)	179, 391
MboI	GATC	2 cut(s)	177, 389
MboII	GAAGA	4 cut(s)	365, 482, 584, 637
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	6 cut(s)	29, 38, 254, 316, 711, 725
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	3 cut(s)	417, 571, 664
MroXI	GAANNNNTTC	2 cut(s)	129, 347
MslI	CAYNNNNRTG	1 cut(s)	471
MspR9I	CCNGG	3 cut(s)	505, 531, 569
MvaI	CCWGG	3 cut(s)	505, 531, 569
MwoI	GCNNNNNNNGC	3 cut(s)	239, 482, 665
NdeII	GATC	2 cut(s)	177, 389
NlaIII	CATG	3 cut(s)	470, 527, 744
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	351
PagI	TCATGA	2 cut(s)	466, 740
PceI	AGGCCT	2 cut(s)	151, 691
PdmI	GAANNNNTTC	2 cut(s)	129, 347
PfeI	GAWTC	3 cut(s)	138, 428, 737
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	567
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	503, 529, 567
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	3 cut(s)	503, 529, 567
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	471
Sau3AI	GATC	2 cut(s)	177, 389
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	505, 531, 569
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	251, 463
SfuI	TTCGAA	1 cut(s)	351
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	6 cut(s)	29, 38, 254, 316, 711, 725
SseBI	AGGCCT	2 cut(s)	151, 691
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	4 cut(s)	153, 374, 446, 539
StuI	AGGCCT	2 cut(s)	151, 691
StyD4I	CCNGG	3 cut(s)	503, 529, 567
TaaI	ACNGT	3 cut(s)	102, 196, 273
TaqI	TCGA	3 cut(s)	180, 289, 351
TasI	AATT	6 cut(s)	29, 38, 254, 316, 711, 725
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	138, 428, 737
TscAI	CASTG	2 cut(s)	199, 276
TseFI	GTSAC	1 cut(s)	700
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	3 cut(s)	42, 399, 483
TspRI	CASTG	2 cut(s)	199, 276
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	527
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	29, 711
XmiI	GTMKAC	2 cut(s)	262, 457
XmnI	GAANNNNTTC	2 cut(s)	129, 347
XspI	CTAG	4 cut(s)	153, 374, 446, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.