Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015497

Physical Location & Seq

Genomic Coordinates Forward (+)

61000194 .. 61000511

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0478900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTTTCATTGCATGGTAGTGGTCAAGAAATGCGCTTCAAGTTTATTGAGGATTCAGATGCGGTTGTAAACATGACAATCGATGGGGTACAGTGGAAAAGAACTTCACTTGATGGTTTACTCGAGATTGAAATCTCTTACCACTGTCAAGTTAATGTTCTTGTTAAACAAGACTACTCAGCAAAAAATACCCATGGCTCATCGCAGCCCTGTGGATCAGAAACTGATGATGATAATGATAGAGAGTATTCTCAAAGCTATAAGAAATTTGCGGCAGCAAGCAGCTTTAAAATGCCGGAGGATGACATTAGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005975 GO:0006081 GO:0006082 GO:0006097 GO:0008150 GO:0008152 GO:0009514 GO:0009987 GO:0016829 GO:0016830 GO:0016833 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01200 map00630 map01100 map01110 map01120 map01200

Pfam Domains

Protein Families

ICL

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

4.63

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21720
fragaria_vesca	FvH4_6g43440
malus_domestica	MD09G1106500.v1.1 MD17G1094300.v1.1
prunus_persica	Prupe.3G219100_v2.0.a1
pyrus_communis	pycom17g09100
rosa_chinensis	RchiOBHm_Chr2g0159821
rosa_laevigata	RLG00000021183
rosa_multiflora	Rmu_sc0016393.1_g000006
rosa_roxburghii	Rroxscaffold_2G00090220
rosa_rugosa	Rorug02G0478900
rosa_samantha	Rh2AG545300 Rh2BG558500 Rh2CG528500 Rh2DG567600
rosa_wichuraiana	Rw2G045100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 272
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	40, 131
AluBI	AGCT	2 cut(s)	258, 285
AluI	AGCT	2 cut(s)	258, 285
AlwI	GGATC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	205, 275, 282
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	217, 287, 294
BccI	CCATC	2 cut(s)	77, 107
BisI	GCNGC	4 cut(s)	206, 273, 276, 283
BlsI	GCNGC	4 cut(s)	207, 274, 277, 284
BmeT110I	CYCGRG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	131
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	217, 287, 294
BshVI	ATCGAT	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	2 cut(s)	62, 272
BspCNI	CTCAG	1 cut(s)	191
BspDI	ATCGAT	1 cut(s)	81
BspPI	GGATC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	93, 146
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	217, 287, 294
Bsu15I	ATCGAT	1 cut(s)	81
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	98, 142
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	14, 73, 194
CviJI	RGCY	4 cut(s)	198, 208, 258, 285
CviKI_1	RGCY	4 cut(s)	198, 208, 258, 285
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
DraI	TTTAAA	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	3 cut(s)	17, 76, 197
FaiI	YATR	4 cut(s)	15, 74, 195, 261
FatI	CATG	3 cut(s)	13, 72, 193
Fnu4HI	GCNGC	4 cut(s)	206, 273, 276, 283
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	206, 273, 276, 283
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	4 cut(s)	206, 273, 276, 283
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	17, 76, 197
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	70, 119
Hpy188I	TCNGA	2 cut(s)	58, 220
Hpy188III	TCNNGA	2 cut(s)	26, 124
Hpy8I	GTNNAC	2 cut(s)	70, 119
HpyCH4III	ACNGT	2 cut(s)	93, 146
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	17, 76, 197
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	215
LpnPI	CCDG	2 cut(s)	223, 309
Lsp1109I	GCAGC	3 cut(s)	217, 287, 294
LweI	GCATC	1 cut(s)	49
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MluCI	AATT	1 cut(s)	266
MnlI	CCTC	2 cut(s)	43, 292
MseI	TTAA	3 cut(s)	153, 165, 288
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	3 cut(s)	17, 76, 197
PaeR7I	CTCGAG	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	207, 274, 277, 284
PstNI	CAGNNNCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	153, 165, 288
SatI	GCNGC	4 cut(s)	206, 273, 276, 283
Sau3AI	GATC	1 cut(s)	215
SetI	ASST	2 cut(s)	260, 287
SfaNI	GCATC	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	2 cut(s)	62, 272
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	93, 146
TaqI	TCGA	2 cut(s)	81, 123
TasI	AATT	1 cut(s)	266
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	3 cut(s)	153, 165, 288
Tru9I	TTAA	3 cut(s)	153, 165, 288
TscAI	CASTG	2 cut(s)	98, 149
TseI	GCWGC	3 cut(s)	205, 275, 282
TspRI	CASTG	2 cut(s)	98, 149
XapI	RAATTY	1 cut(s)	266
XhoI	CTCGAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.