Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009880

Physical Location & Seq

Genomic Coordinates Forward (+)

63771312 .. 63776218

Gene Structure 4907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0506400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGTACCAGTGGAGGAAATTCGAGTTCTTCGAGGAGAAATTGGCGGGAAAGTGCGCGATTCCCGAGGAAGTAACGGGCAAGATCGAGTGCAGTTCGAGCGGCCGAGGCAAGGTGGTGATCGGCTGCGACGACGGCACCGTCAGCTTCCTCGACCGCAGCCTCCACTTCAGCTACGGCTTCCAAGCTCACTCCTCCGTTCTCTTCCTTCAGCAGCTCAAGCAAAGAAACTTTTTAGTGACAATTGGAGACGATGAACAAATCTCGGCGCAGCAATCAAGGTGCCTCAAGGTCTTTGACCTAGATAGGATACAGCCCGAGGGTTCGAGCTCAACCAGCCCCGATTGCATTGGCATCTTGAGGATTTTTACCAACCAATTTCCTGAAGCAAAGATTACATCGTTTTTAGTACTAGAGGAAGCGCCGCCGATACTACTTATAGCTATTGGACTAGATAATGGCTGCGTTTACTGCATTAAAGGGGATATTGCGCGGGAGCGTATCACCCGGTTCAAGCTCCAGGTGAATAATGTTTCTGACAAGAGCCAGTGCTCGATCACGGGATTGGGGTTCAGAGTGGATGGTCAGGCCCTTCAGTTGTTTGCTGTGACACCGTCTTCTGTGAGCTTGTTCATCTTGCAGAACCAACCGTCAAGGGGGCAAACCCTGGATCAGATTGGAGGCAATGTTAACAGTGTGGCCATGAGTGATCGCGGGGAGTTGATAATTGGTCGACCTGAGGCTGTGTATTTTTATGAAGTCGATGGGCGTGGTCCTTGTTGGGCTTTTGAAGGAGAAAAGAAATTTTTAGGCTGGTTTCGTGGATATCTTCTGTGTATTATAGAAGATCAGAGAAGTGGTAACCACACTTTCAACATATATGACCTGAAGAACCATTTAATTGCCCACAGCCTTGTGGTAAAAGAGGTTTCTCACATGCTCTGCGAATGGGGTAGCATAATACTTATAATGGCTGACAAGTCCGCTTTGTGCATTGGGGAGAAGGATATGGAGAGCAAGTTAGATATGCTTTTTAAGAAGAATCTATATACGGTTGCCATCAACCTTGTCCAGAGTCAGCAAGCTGATGCTGCCGCAACTGCTGAAGTGCTAAGAAAGTATGGTGATCATCTTTATAGCAAGCAAGATTATGATGAGGCAATGGCCCAGTATATCCATACCATTGGTCACCTTGAGCCATCTTATGTTATACAAAAGTTTCTAGATGCGCAACGAATCTACAATCTTACGAATTACTTGGAGAAATTGCATGAGAAGGGGCTTGCTTCTAAAGATCATACCACTCTTCTATTGAACTGCTACACCAAATTGAAAGATGTTGACAAGCTAAATGTGTTCATTAAAAGTGAGGATGGTCTTGGGGAACATAGGTTTGATGTGGAGACGGCAATACGGGTCTGCCGTGCTACCAACTACCATGAGCATGCAATGTATGTCGCTAAGAAGGCAGGGAAGCATGAGTGGTACTTGAAGATCTTACTTGAAGACCTTGGTAGATATGAGGAAGCCTTGCAATATATTTCAAGCCTTGAGCCGAGCCAAGCTGGAGTAACAGTCAAAGAATACGGTAAGATTCTGATAGAGCACAAGCCCGAGGAGACAATTGAGATACTGATGAAGCTGTGCACTGAGGATGGAGAATCAGCCAAGAGAGGACGCACTAATGGTGCATACTTAACTATGTTACCATCTCCTGTTGATTTCCTGAACATCTTCATCCATCATCTTCAGTCACTAATGGTTTTCCTTGAAAAGTATACCAACAAGGTCAAAGACTCTCCTGCTCAAGTAGAAATCCATAACACACTCTTGGAGTTGTATTTGTCGAATGACTTGAACTTCCCGTTGATGTTGCAAGCTGGCAATGGTGGAGATATAAGTGTTAGGGCTATTAGACCGGGAGCAGCCACAATGTCAAAAGCTGAGTCGAATGGGAAATTTGTTGCGGATGGCAAAGACTTAACTCAGGAAATGGACCGTATGGAAAGGCAAGAGAAAGGGCTAAGACTGCTAAAGAGTGCATGGCCGTCTGAGCTGGAACATCCGCTTTATGATGTTGATCTTGCCATAATCCTCTGCGAAATGAATGAATTTAAGGAAGGGCTTCTCTATATATATGAGAAAATGAAACTCTATAAAGAGGTCATTTCTTGCTACATGCAAGCCCATGACCATGAAGGTTTGATTGCATGCTGCAAACGATTAGGGGATTCAGGTAAGGGTGGGGACCCAACTCTTTGGGCAGATCTGCTGAAATATTTTGGTGAACTTGGAGAAGATTGTTCCAAAGAAGTGAAGGAAGTTTTGACGTATATAGAAAGAGATGATATCTTGCCTCCTATTATTGTTCTTCAAACACTGTCCAGAAATCCATGCCTCACACTCTCTGTCATTAAGGAGTACATTGCTCGAAAGCTTGAACAAGAATCAAAACTGATTGAAGAGGACCGTCGAGCTATTGAGAAGTATCAGGAAGCAACATTGACAATGAGAAAAGAAATTCAGGATCTTAGGACAAATGCAAGGATCTTTCAGCTCAGCAAGTGCACTGCATGTACTTTCACTCTTGATCTCCCTGCTGTACATTTTATGTGTATCCACTCATTCCATCAGCGTTGCCTCGGTGATAATGAGAAAGAATGCCCTGTATGTGCTCCTGAATACAGATCTGTTCTAGAAATGAAAACAAGTTTAGAGCAAAACTCCAAAGATCAGGATCGGTTCTTCCAGCAAGTTAAAAATTCAAAGGATGGTTTTTCTGTAATCGCTGAGTATTTCGGGAAGGGGGTCATTAGCAAAACCAGTAATGGACCCACAGGTGCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

949

Amino Acids

107.47

Weight (kDa)

5.73

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEP5_VPS11_N	PF23341	4 - 333	2.3e-90	PEP5/VPS11 N-terminal
VPS11_N	PF23266	26 - 328	7.8e-116	VPS11-like, N-terminal beta-propeller
TPR_PEP5_VPS11	PF23356	378 - 617	1.5e-62	PEP5/VPS11 Clathrin repeat
Clathrin	PF00637	398 - 537	1.3e-06	Region in Clathrin and VPS
TPR_PEP5_VPS11	PF23356	687 - 791	1.4e-17	PEP5/VPS11 Clathrin repeat
zf-C3H2C3	PF17122	855 - 890	6.7e-06	Zinc-finger
VPS11_C	PF12451	895 - 937	1e-13	Vacuolar protein sorting protein 11 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16000
fragaria_vesca	FvH4_6g45850 FvH4_6g45850 FvH4_6g45850
malus_domestica	MD09G1079400.v1.1 MD17G1069800.v1.1
prunus_persica	Prupe.3G244900_v2.0.a1
pyrus_communis	pycom09g00620 pycom17g06990
rosa_chinensis	RchiOBHm_Chr2g0164051
rosa_laevigata	RLG00000021435
rosa_multiflora	Rmu_ssc0000432.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086800
rosa_rugosa	Rorug02G0506300 Rorug02G0506300 Rorug02G0506300 Rorug02G0506400
rosa_samantha	Rh2BG585200 Rh2CG556100 Rh2DG594800
rosa_wichuraiana	Rw2G047530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	965
AasI	GACNNNNNNGTC	1 cut(s)	137
Acc16I	TGCGCA	1 cut(s)	1227
AccB1I	GGYRCC	2 cut(s)	134, 279
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	2 cut(s)	730, 1775
AccII	CGCG	3 cut(s)	56, 490, 711
AclWI	GGATC	4 cut(s)	675, 2532, 2552, 2742
AcoI	YGGCCR	3 cut(s)	100, 696, 2042
AcsI	RAATTY	6 cut(s)	17, 800, 1955, 2108, 2517, 2758
AcuI	CTGAAG	7 cut(s)	151, 191, 402, 575, 905, 1122, 1730
AfaI	GTAC	6 cut(s)	5, 408, 1484, 2420, 2575, 2601
AfiI	CCNNNNNNNGG	2 cut(s)	109, 653
AjnI	CCWGG	2 cut(s)	516, 663
Alw21I	GWGCWC	6 cut(s)	329, 551, 1605, 1646, 2567, 2674
Alw26I	GTCTC	3 cut(s)	240, 1394, 1610
Alw44I	GTGCAC	2 cut(s)	1642, 2563
AlwI	GGATC	4 cut(s)	675, 2532, 2552, 2742
Ama87I	CYCGRG	3 cut(s)	62, 314, 1610
AoxI	GGCC	5 cut(s)	100, 585, 696, 1161, 2042
ApaLI	GTGCAC	2 cut(s)	1642, 2563
ApeKI	GCWGC	8 cut(s)	123, 156, 211, 268, 459, 1088, 1922, 2211
ApoI	RAATTY	6 cut(s)	17, 800, 1955, 2108, 2517, 2758
ArsI	GACNNNNNNTTYG	2 cut(s)	1928, 1960
Asp700I	GAANNNNTTC	2 cut(s)	1730, 2121
AspLEI	GCGC	5 cut(s)	56, 268, 421, 490, 1228
AspS9I	GGNCC	7 cut(s)	586, 770, 1162, 1993, 2245, 2464, 2828
AsuC2I	CCSGG	2 cut(s)	505, 1917
AsuHPI	GGTGA	7 cut(s)	127, 493, 532, 1133, 1178, 2294, 2654
AvaI	CYCGRG	3 cut(s)	62, 314, 1610
AvaII	GGWCC	5 cut(s)	770, 1993, 2245, 2464, 2828
AxyI	CCTNAGG	1 cut(s)	735
BaeGI	GKGCMC	2 cut(s)	1646, 2567
BalI	TGGCCA	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	134, 279
BanII	GRGCYC	1 cut(s)	329
BbsI	GAAGAC	2 cut(s)	606, 1509
Bbv12I	GWGCWC	6 cut(s)	329, 551, 1605, 1646, 2567, 2674
BbvI	GCAGC	8 cut(s)	110, 168, 223, 280, 446, 1075, 1934, 2198
BceAI	ACGGC	5 cut(s)	148, 190, 1404, 1419, 2029
BciT130I	CCWGG	2 cut(s)	518, 665
BciVI	GTATCC	2 cut(s)	300, 2624
BclI	TGATCA	1 cut(s)	1123
BcnI	CCSGG	2 cut(s)	505, 1917
BcoDI	GTCTC	3 cut(s)	240, 1394, 1610
BfaI	CTAG	5 cut(s)	299, 410, 449, 1220, 2693
BfoI	RGCGCY	1 cut(s)	422
BfuI	GTATCC	2 cut(s)	300, 2624
BglII	AGATCT	3 cut(s)	1491, 2263, 2684
BlpI	GCTNAGC	1 cut(s)	2555
BmcAI	AGTACT	1 cut(s)	408
Bme1390I	CCNGG	4 cut(s)	505, 518, 665, 1917
Bme18I	GGWCC	5 cut(s)	770, 1993, 2245, 2464, 2828
BmeT110I	CYCGRG	3 cut(s)	62, 314, 1610
BmgT120I	GGNCC	7 cut(s)	586, 770, 1162, 1993, 2245, 2464, 2828
BmiI	GGNNCC	5 cut(s)	136, 281, 2246, 2247, 2830
BmrFI	CCNGG	4 cut(s)	505, 518, 665, 1917
BmrI	ACTGGG	1 cut(s)	1159
BmsI	GCATC	3 cut(s)	360, 1075, 1213
BmuI	ACTGGG	1 cut(s)	1159
BpiI	GAAGAC	2 cut(s)	606, 1509
BplI	GAGNNNNNCTC	2 cut(s)	2705, 2737
BpmI	CTGGAG	2 cut(s)	500, 1584
Bpu1102I	GCTNAGC	1 cut(s)	2555
BpuEI	CTTGAG	6 cut(s)	200, 269, 376, 1211, 1568, 1788
BpuMI	CCSGG	2 cut(s)	505, 1917
BsaBI	GATNNNNATC	2 cut(s)	2076, 2733
BsaJI	CCNNGG	7 cut(s)	63, 103, 315, 663, 1507, 1611, 2638
BsaXI	ACNNNNNCTCC	6 cut(s)	669, 699, 1001, 1031, 1557, 1587
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 653
Bse1I	ACTGG	4 cut(s)	7, 544, 1165, 2820
Bse21I	CCTNAGG	1 cut(s)	735
Bse3DI	GCAATG	5 cut(s)	688, 1164, 1452, 1888, 2421
Bse8I	GATNNNNATC	2 cut(s)	2076, 2733
BseBI	CCWGG	2 cut(s)	518, 665
BseDI	CCNNGG	7 cut(s)	63, 103, 315, 663, 1507, 1611, 2638
BseGI	GGATG	7 cut(s)	583, 1375, 1657, 1734, 1972, 2059, 2773
BseJI	GATNNNNATC	2 cut(s)	2076, 2733
BseLI	CCNNNNNNNGG	2 cut(s)	109, 653
BseMI	GCAATG	5 cut(s)	688, 1164, 1452, 1888, 2421
BseMII	CTCAG	7 cut(s)	726, 1638, 1932, 1997, 2040, 2569, 2778
BseNI	ACTGG	4 cut(s)	7, 544, 1165, 2820
BseRI	GAGGAG	3 cut(s)	47, 181, 1628
BseSI	GKGCMC	2 cut(s)	1646, 2567
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	8 cut(s)	110, 168, 223, 280, 446, 1075, 1934, 2198
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	3 cut(s)	56, 490, 711
Bsh1285I	CGRYCG	2 cut(s)	103, 154
BshFI	GGCC	5 cut(s)	102, 587, 698, 1163, 2044
BshNI	GGYRCC	2 cut(s)	134, 279
BsiEI	CGRYCG	2 cut(s)	103, 154
BsiHKAI	GWGCWC	6 cut(s)	329, 551, 1605, 1646, 2567, 2674
BsiHKCI	CYCGRG	3 cut(s)	62, 314, 1610
BsiSI	CCGG	2 cut(s)	505, 1916
BslFI	GGGAC	1 cut(s)	2258
BslI	CCNNNNNNNGG	2 cut(s)	109, 653
BsmAI	GTCTC	3 cut(s)	240, 1394, 1610
BsmBI	CGTCTC	2 cut(s)	240, 1394
BsmFI	GGGAC	1 cut(s)	2258
BsmI	GAATGC	1 cut(s)	2663
BsnI	GGCC	5 cut(s)	102, 587, 698, 1163, 2044
BsoBI	CYCGRG	3 cut(s)	62, 314, 1610
Bsp1286I	GDGCHC	6 cut(s)	329, 551, 1605, 1646, 2567, 2674
Bsp1407I	TGTACA	1 cut(s)	2599
Bsp1720I	GCTNAGC	1 cut(s)	2555
BspANI	GGCC	5 cut(s)	102, 587, 698, 1163, 2044
BspCNI	CTCAG	7 cut(s)	727, 1639, 1933, 1996, 2041, 2568, 2779
BspFNI	CGCG	3 cut(s)	56, 490, 711
BspLI	GGNNCC	5 cut(s)	136, 281, 2246, 2247, 2830
BspPI	GGATC	4 cut(s)	675, 2532, 2552, 2742
BspT107I	GGYRCC	2 cut(s)	134, 279
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	5 cut(s)	688, 1164, 1452, 1888, 2421
BsrGI	TGTACA	1 cut(s)	2599
BsrI	ACTGG	4 cut(s)	7, 544, 1165, 2820
BssECI	CCNNGG	7 cut(s)	63, 103, 315, 663, 1507, 1611, 2638
BssNAI	GTATAC	1 cut(s)	1776
BssT1I	CCWWGG	1 cut(s)	1507
Bst1107I	GTATAC	1 cut(s)	1776
Bst2UI	CCWGG	2 cut(s)	518, 665
Bst6I	CTCTTC	3 cut(s)	206, 1308, 2454
BstAUI	TGTACA	1 cut(s)	2599
BstC8I	GCNNGC	8 cut(s)	1080, 1139, 1281, 1443, 1875, 1879, 2181, 2209
BstEII	GGTNACC	2 cut(s)	857, 1184
BstF5I	GGATG	7 cut(s)	583, 1375, 1657, 1734, 1972, 2059, 2773
BstFNI	CGCG	3 cut(s)	56, 490, 711
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	5 cut(s)	56, 268, 421, 490, 1228
BstMAI	GTCTC	3 cut(s)	240, 1394, 1610
BstMCI	CGRYCG	2 cut(s)	103, 154
BstNI	CCWGG	2 cut(s)	518, 665
BstNSI	RCATGY	5 cut(s)	937, 1445, 2179, 2211, 2574
BstPI	GGTNACC	2 cut(s)	857, 1184
BstSCI	CCNGG	4 cut(s)	503, 516, 663, 1915
BstSLI	GKGCMC	2 cut(s)	1646, 2567
BstUI	CGCG	3 cut(s)	56, 490, 711
BstV1I	GCAGC	8 cut(s)	110, 168, 223, 280, 446, 1075, 1934, 2198
BstV2I	GAAGAC	2 cut(s)	606, 1509
BstX2I	RGATCY	5 cut(s)	1491, 2263, 2524, 2544, 2684
BstXI	CCANNNNNNTGG	2 cut(s)	1181, 2256
BstYI	RGATCY	5 cut(s)	1491, 2263, 2524, 2544, 2684
BstZ17I	GTATAC	1 cut(s)	1776
BstZI	CGGCCG	1 cut(s)	100
Bsu36I	CCTNAGG	1 cut(s)	735
BsuI	GTATCC	2 cut(s)	300, 2624
BsuRI	GGCC	5 cut(s)	102, 587, 698, 1163, 2044
BtsCI	GGATG	7 cut(s)	583, 1375, 1657, 1734, 1972, 2059, 2773
BtsI	GCAGTG	1 cut(s)	2565
BtsIMutI	CAGTG	6 cut(s)	14, 551, 697, 1644, 2375, 2565
Cac8I	GCNNGC	8 cut(s)	1080, 1139, 1281, 1443, 1875, 1879, 2181, 2209
CfoI	GCGC	5 cut(s)	56, 268, 421, 490, 1228
Cfr13I	GGNCC	7 cut(s)	586, 770, 1162, 1993, 2245, 2464, 2828
CseI	GACGC	1 cut(s)	1683
Csp6I	GTAC	6 cut(s)	4, 407, 1483, 2419, 2574, 2600
CviQI	GTAC	6 cut(s)	4, 407, 1483, 2419, 2574, 2600
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	3 cut(s)	100, 696, 2042
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	206, 1308, 2454
EarI	CTCTTC	3 cut(s)	206, 1308, 2454
Ecl136II	GAGCTC	1 cut(s)	327
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	1507
Eco24I	GRGCYC	1 cut(s)	329
Eco32I	GATATC	2 cut(s)	824, 2347
Eco47I	GGWCC	5 cut(s)	770, 1993, 2245, 2464, 2828
Eco52I	CGGCCG	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	7 cut(s)	151, 191, 402, 575, 905, 1122, 1730
Eco81I	CCTNAGG	1 cut(s)	735
Eco88I	CYCGRG	3 cut(s)	62, 314, 1610
Eco91I	GGTNACC	2 cut(s)	857, 1184
EcoICRI	GAGCTC	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	586, 2245
EcoO65I	GGTNACC	2 cut(s)	857, 1184
EcoRII	CCWGG	2 cut(s)	516, 663
EcoRV	GATATC	2 cut(s)	824, 2347
EcoT14I	CCWWGG	1 cut(s)	1507
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	1507
Esp3I	CGTCTC	2 cut(s)	240, 1394
FaqI	GGGAC	1 cut(s)	2258
FauI	CCCGC	3 cut(s)	37, 483, 704
FbaI	TGATCA	1 cut(s)	1123
FblI	GTMKAC	2 cut(s)	730, 1775
FokI	GGATG	7 cut(s)	590, 1382, 1664, 1721, 1979, 2046, 2780
FriOI	GRGCYC	1 cut(s)	329
FspBI	CTAG	5 cut(s)	299, 410, 449, 1220, 2693
FspI	TGCGCA	1 cut(s)	1227
GlaI	GCGC	5 cut(s)	55, 267, 420, 489, 1227
GsuI	CTGGAG	2 cut(s)	500, 1584
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	5 cut(s)	102, 587, 698, 1163, 2044
HapII	CCGG	2 cut(s)	505, 1916
HgaI	GACGC	1 cut(s)	1683
HhaI	GCGC	5 cut(s)	56, 268, 421, 490, 1228
Hin6I	GCGC	5 cut(s)	54, 266, 419, 488, 1226
HinP1I	GCGC	5 cut(s)	54, 266, 419, 488, 1226
HincII	GTYRAC	3 cut(s)	688, 731, 1339
HindII	GTYRAC	3 cut(s)	688, 731, 1339
HindIII	AAGCTT	1 cut(s)	2432
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	2 cut(s)	505, 1916
HphI	GGTGA	7 cut(s)	127, 493, 532, 1133, 1178, 2294, 2654
Hpy166II	GTNNAC	8 cut(s)	466, 688, 731, 1339, 1644, 1776, 2285, 2565
Hpy188I	TCNGA	6 cut(s)	535, 572, 672, 849, 1596, 2050
Hpy8I	GTNNAC	8 cut(s)	466, 688, 731, 1339, 1644, 1776, 2285, 2565
Hpy99I	CGWCG	3 cut(s)	131, 134, 2472
HpyCH4IV	ACGT	1 cut(s)	2327
HpySE526I	ACGT	1 cut(s)	2327
HspAI	GCGC	5 cut(s)	54, 266, 419, 488, 1226
KflI	GGGWCCC	1 cut(s)	2245
Ksp22I	TGATCA	1 cut(s)	1123
KspAI	GTTAAC	1 cut(s)	688
LmnI	GCTCC	4 cut(s)	493, 519, 1919, 2677
Lsp1109I	GCAGC	8 cut(s)	110, 168, 223, 280, 446, 1075, 1934, 2198
LweI	GCATC	3 cut(s)	360, 1075, 1213
MaeI	CTAG	5 cut(s)	299, 410, 449, 1220, 2693
MaeII	ACGT	1 cut(s)	2327
MaeIII	GTNAC	8 cut(s)	70, 235, 604, 857, 1184, 1567, 1701, 1749
MbiI	CCGCTC	1 cut(s)	99
MfeI	CAATTG	2 cut(s)	240, 1620
MflI	RGATCY	5 cut(s)	1491, 2263, 2524, 2544, 2684
MhlI	GDGCHC	6 cut(s)	329, 551, 1605, 1646, 2567, 2674
MlsI	TGGCCA	1 cut(s)	698
MluNI	TGGCCA	1 cut(s)	698
MlyI	GAGTC	3 cut(s)	1081, 1787, 1952
Mox20I	TGGCCA	1 cut(s)	698
MroXI	GAANNNNTTC	2 cut(s)	1730, 2121
MscI	TGGCCA	1 cut(s)	698
MslI	CAYNNNNRTG	2 cut(s)	1440, 2190
Msp20I	TGGCCA	1 cut(s)	698
MspI	CCGG	2 cut(s)	505, 1916
MspR9I	CCNGG	4 cut(s)	505, 518, 665, 1917
MunI	CAATTG	2 cut(s)	240, 1620
Mva1269I	GAATGC	1 cut(s)	2663
MvaI	CCWGG	2 cut(s)	518, 665
MvnI	CGCG	3 cut(s)	56, 490, 711
NciI	CCSGG	2 cut(s)	505, 1917
NlaIV	GGNNCC	5 cut(s)	136, 281, 2246, 2247, 2830
NmeAIII	GCCGAG	3 cut(s)	128, 242, 1578
NmuCI	GTSAC	4 cut(s)	235, 604, 1184, 1749
NsbI	TGCGCA	1 cut(s)	1227
NspI	RCATGY	5 cut(s)	937, 1445, 2179, 2211, 2574
PaeI	GCATGC	2 cut(s)	1445, 2211
PcsI	WCGNNNNNNNCGW	4 cut(s)	27, 126, 135, 1417
PctI	GAATGC	1 cut(s)	2663
PdmI	GAANNNNTTC	2 cut(s)	1730, 2121
PfeI	GAWTC	7 cut(s)	58, 1039, 1233, 1591, 1658, 2228, 2444
PflFI	GACNNNGTC	1 cut(s)	610
PleI	GAGTC	3 cut(s)	1080, 1787, 1951
PpsI	GAGTC	3 cut(s)	1080, 1787, 1951
PpuMI	RGGWCCY	1 cut(s)	2245
PsiI	TTATAA	1 cut(s)	965
Psp124BI	GAGCTC	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	2245
Psp6I	CCWGG	2 cut(s)	516, 663
PspEI	GGTNACC	2 cut(s)	857, 1184
PspGI	CCWGG	2 cut(s)	516, 663
PspN4I	GGNNCC	5 cut(s)	136, 281, 2246, 2247, 2830
PspPI	GGNCC	7 cut(s)	586, 770, 1162, 1993, 2245, 2464, 2828
PspPPI	RGGWCCY	1 cut(s)	2245
PsuI	RGATCY	5 cut(s)	1491, 2263, 2524, 2544, 2684
PsyI	GACNNNGTC	1 cut(s)	610
RsaI	GTAC	6 cut(s)	5, 408, 1484, 2420, 2575, 2601
RsaNI	GTAC	6 cut(s)	4, 407, 1483, 2419, 2574, 2600
RseI	CAYNNNNRTG	2 cut(s)	1440, 2190
SacI	GAGCTC	1 cut(s)	329
SalI	GTCGAC	1 cut(s)	729
Sau96I	GGNCC	7 cut(s)	586, 770, 1162, 1993, 2245, 2464, 2828
ScaI	AGTACT	1 cut(s)	408
SchI	GAGTC	3 cut(s)	1081, 1787, 1952
ScrFI	CCNGG	4 cut(s)	505, 518, 665, 1917
SduI	GDGCHC	6 cut(s)	329, 551, 1605, 1646, 2567, 2674
SfaNI	GCATC	3 cut(s)	360, 1075, 1213
SinI	GGWCC	5 cut(s)	770, 1993, 2245, 2464, 2828
SmiMI	CAYNNNNRTG	2 cut(s)	1440, 2190
SmlI	CTYRAG	6 cut(s)	215, 284, 355, 1190, 1547, 1803
SmoI	CTYRAG	6 cut(s)	215, 284, 355, 1190, 1547, 1803
SphI	GCATGC	2 cut(s)	1445, 2211
SspI	AATATT	1 cut(s)	2276
SspMI	CTAG	5 cut(s)	299, 410, 449, 1220, 2693
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	4 cut(s)	503, 516, 663, 1915
StyI	CCWWGG	1 cut(s)	1507
TaiI	ACGT	1 cut(s)	2330
TatI	WGTACW	4 cut(s)	406, 2418, 2573, 2599
TauI	GCSGC	3 cut(s)	102, 424, 1094
TfiI	GAWTC	7 cut(s)	58, 1039, 1233, 1591, 1658, 2228, 2444
TscAI	CASTG	6 cut(s)	14, 551, 697, 1651, 2382, 2572
TseFI	GTSAC	4 cut(s)	235, 604, 1184, 1749
TseI	GCWGC	8 cut(s)	123, 156, 211, 268, 459, 1088, 1922, 2211
Tsp45I	GTSAC	4 cut(s)	235, 604, 1184, 1749
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	6 cut(s)	14, 551, 697, 1651, 2382, 2572
Tth111I	GACNNNGTC	1 cut(s)	610
VneI	GTGCAC	2 cut(s)	1642, 2563
VpaK11BI	GGWCC	5 cut(s)	770, 1993, 2245, 2464, 2828
XapI	RAATTY	6 cut(s)	17, 800, 1955, 2108, 2517, 2758
XbaI	TCTAGA	2 cut(s)	1219, 2692
XceI	RCATGY	5 cut(s)	937, 1445, 2179, 2211, 2574
XmiI	GTMKAC	2 cut(s)	730, 1775
XmnI	GAANNNNTTC	2 cut(s)	1730, 2121
XspI	CTAG	5 cut(s)	299, 410, 449, 1220, 2693
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.