Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009880

Physical Location & Seq

Genomic Coordinates Forward (+)

80106350 .. 80125340

Gene Structure 18991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG585200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGAATGGGAGGAGCAAAAGCTGTTCTATGTTTTGTGGCATTTGTGTGGTATTGGACTTGTGGGAATGGATTGCTTTCCCCTAAAGGTGTAAACTTTGAAGTTCAAGCTTTGATGGGCATAAAGGAAGCTCTGGAGGATCCTCATGGTGTTCTAGGTAATTGGGATTATGATGCTGTTGATCCATGTAGCTGGACTATGGTCACTTGCTCTTCTGAAAACCTCGTTGTTGGCCTAGGAGTTCCTAGCCAGAATTTATCAGGCACTCTTTCTCCAAGCATAGGCAACTTGACAAATCTTCAGATTGTTCTCGTACAGAACAACAACATAACAGGACCAATCCCTCAGGAAATTGGGAAGCTCTCAAAGCTCAAGACTCTTGATGTTTCCAGCAACTTCTTGACTGGGGGAATTCCCTCCTCTTTGGGTCACCTGAAAAGCCTCCAGTACTTGAGGCTCAACAACAACAGTCTCACCGGAGTACTTCCGATGTCGTTGGCTAACATGACCAACCTTGCCTTTCTGGACCTGTCCTACAATAATCTGAGTGGCCCTGTGCCTAGATTTGCTGCTAAAACATTCAACATAGTTGGAAACCCTCTGATCTGTGCAACCGGGTCTGAAGCAGACTGCAATGGGATGGAACTGATGCCAATGTCCATGAACTTGAATAATACACAGGCCGCTCTTCCTGACAAACCTAAAAGTCGCAAAATGGCACTTGCTTTTGGTTTGAGCCTCGGATGCCTCTGCCTGATTGTTCTTGGATTTGGAGTAGTTATATGGTGGAGGCAAAGGCGCTATAAACAGGCATTCTTTGATGTTAAAGACAAGCATCATGAAGAAATTTCGCTTGGGAACTTGAAGAGATTTCATTTCAGAGAACTTCAGATTGCAACAAATAACTTCAGCAGCAACCTAGCAGTTCATCGCAACCTTCTCCGGCTTTATGGGTTTTGCATCACTCCAACAGAAAGACTTCTAGTTTACCCATACATGTCCAATGGCAGTGTGGCTTCTCGTCTCAAAGATAGCTTGGATAATGTGGAGATTTTAATGGCTCTAGAAGAAGAGTTCAAGCTTGAGATTCCTGACAAGGAAGCCGATAAGATTGATTCTGCAAATCTGGCCATTAAGGACATCTATAACCATCCAATAATGGCTTCGAACCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

391

Amino Acids

42.98

Weight (kDa)

7.03

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 71	1.7e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	93 - 177	1.4e-10	Leucine-rich repeat region
LRR_8	PF13855	98 - 158	1.1e-07	Leucine rich repeat
LRR_8	PF13855	123 - 182	6.7e-10	Leucine rich repeat
LRR_4	PF12799	146 - 183	2.3e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16000
fragaria_vesca	FvH4_6g45850 FvH4_6g45850 FvH4_6g45850
malus_domestica	MD09G1079400.v1.1 MD17G1069800.v1.1
prunus_persica	Prupe.3G244900_v2.0.a1
pyrus_communis	pycom09g00620 pycom17g06990
rosa_chinensis	RchiOBHm_Chr2g0164051
rosa_laevigata	RLG00000021435
rosa_multiflora	Rmu_ssc0000432.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086800
rosa_rugosa	Rorug02G0506300 Rorug02G0506300 Rorug02G0506300 Rorug02G0506400
rosa_samantha	Rh2BG585200 Rh2CG556100 Rh2DG594800
rosa_wichuraiana	Rw2G047530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	686
AciI	CCGC	1 cut(s)	684
AclWI	GGATC	3 cut(s)	134, 147, 176
AcoI	YGGCCR	1 cut(s)	1128
AcsI	RAATTY	3 cut(s)	253, 411, 846
AcuI	CTGAAG	4 cut(s)	284, 642, 872, 892
AfaI	GTAC	3 cut(s)	315, 449, 483
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	996
AgsI	TTSAA	6 cut(s)	101, 107, 583, 670, 865, 1078
AjuI	GAANNNNNNNTTGG	3 cut(s)	837, 869, 1147
AluBI	AGCT	8 cut(s)	23, 110, 131, 192, 361, 370, 1035, 1081
AluI	AGCT	8 cut(s)	23, 110, 131, 192, 361, 370, 1035, 1081
Alw26I	GTCTC	2 cut(s)	476, 1028
AlwI	GGATC	3 cut(s)	134, 147, 176
AoxI	GGCC	4 cut(s)	232, 550, 681, 1128
ApeKI	GCWGC	2 cut(s)	569, 912
ApoI	RAATTY	3 cut(s)	253, 411, 846
Asp700I	GAANNNNTTC	1 cut(s)	978
AspA2I	CCTAGG	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	3 cut(s)	335, 526, 551
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	2 cut(s)	422, 466
AsuII	TTCGAA	1 cut(s)	1166
AvaII	GGWCC	2 cut(s)	335, 526
AvrII	CCTAGG	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	1130
BamHI	GGATCC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	556, 924
BccI	CCATC	3 cut(s)	109, 634, 1158
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	2 cut(s)	476, 1028
BfaI	CTAG	7 cut(s)	155, 236, 246, 561, 920, 983, 1064
BfoI	RGCGCY	1 cut(s)	802
BisI	GCNGC	3 cut(s)	570, 684, 913
BlnI	CCTAGG	1 cut(s)	235
BlsI	GCNGC	3 cut(s)	571, 685, 914
BmcAI	AGTACT	2 cut(s)	449, 483
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	2 cut(s)	335, 526
BmgT120I	GGNCC	3 cut(s)	335, 526, 551
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	616
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	5 cut(s)	163, 639, 734, 844, 969
BmuI	ACTGGG	1 cut(s)	414
BoxI	GACNNNNGTC	1 cut(s)	200
BpmI	CTGGAG	2 cut(s)	155, 428
Bpu14I	TTCGAA	1 cut(s)	1166
BpuEI	CTTGAG	3 cut(s)	356, 472, 1103
BpuMI	CCSGG	1 cut(s)	616
BsaJI	CCNNGG	2 cut(s)	235, 739
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	409, 445
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	640
BseDI	CCNNGG	2 cut(s)	235, 739
BseGI	GGATG	3 cut(s)	645, 749, 1150
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	359, 536
BseNI	ACTGG	2 cut(s)	409, 445
BseRI	GAGGAG	2 cut(s)	27, 409
BseXI	GCAGC	2 cut(s)	556, 924
BshFI	GGCC	4 cut(s)	234, 552, 683, 1130
BsiSI	CCGG	3 cut(s)	477, 615, 943
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	476, 1028
BsmBI	CGTCTC	1 cut(s)	1028
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	4 cut(s)	234, 552, 683, 1130
Bsp119I	TTCGAA	1 cut(s)	1166
Bsp143I	GATC	3 cut(s)	139, 181, 603
BspACI	CCGC	1 cut(s)	684
BspANI	GGCC	4 cut(s)	234, 552, 683, 1130
BspCNI	CTCAG	2 cut(s)	358, 537
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	134, 147, 176
BspQI	GCTCTTC	2 cut(s)	217, 693
BspT104I	TTCGAA	1 cut(s)	1166
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	409, 445
BssECI	CCNNGG	2 cut(s)	235, 739
BssMI	GATC	3 cut(s)	139, 181, 603
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	470, 1172
Bst6I	CTCTTC	4 cut(s)	217, 693, 860, 1065
BstBI	TTCGAA	1 cut(s)	1166
BstDEI	CTNAG	2 cut(s)	345, 545
BstEII	GGTNACC	1 cut(s)	428
BstF5I	GGATG	3 cut(s)	645, 749, 1150
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	3 cut(s)	142, 184, 606
BstMAI	GTCTC	2 cut(s)	476, 1028
BstMBI	GATC	3 cut(s)	139, 181, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 744, 1127
BstNSI	RCATGY	1 cut(s)	1000
BstPAI	GACNNNNGTC	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	614
BstV1I	GCAGC	2 cut(s)	556, 924
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	234, 552, 683, 1130
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	3 cut(s)	645, 749, 1150
BtsI	GCAGTG	1 cut(s)	1015
BtsIMutI	CAGTG	1 cut(s)	1015
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	335, 526, 551
Csp6I	GTAC	3 cut(s)	314, 448, 482
CviAII	CATG	6 cut(s)	146, 186, 505, 661, 839, 997
CviQI	GTAC	3 cut(s)	314, 448, 482
DdeI	CTNAG	2 cut(s)	345, 545
DpnI	GATC	3 cut(s)	141, 183, 605
DpnII	GATC	3 cut(s)	139, 181, 603
EaeI	YGGCCR	1 cut(s)	1128
Eam1104I	CTCTTC	4 cut(s)	217, 693, 860, 1065
EarI	CTCTTC	4 cut(s)	217, 693, 860, 1065
Eco130I	CCWWGG	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	335, 526
Eco57I	CTGAAG	4 cut(s)	284, 642, 872, 892
Eco81I	CCTNAGG	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	1028
FaeI	CATG	6 cut(s)	149, 189, 508, 664, 842, 1000
FatI	CATG	6 cut(s)	145, 185, 504, 660, 838, 996
Fnu4HI	GCNGC	3 cut(s)	570, 684, 913
FokI	GGATG	3 cut(s)	652, 756, 1137
Fsp4HI	GCNGC	3 cut(s)	570, 684, 913
FspBI	CTAG	7 cut(s)	155, 236, 246, 561, 920, 983, 1064
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	3 cut(s)	570, 684, 913
GsuI	CTGGAG	2 cut(s)	155, 428
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	4 cut(s)	234, 552, 683, 1130
HapII	CCGG	3 cut(s)	477, 615, 943
HhaI	GCGC	1 cut(s)	801
Hin1II	CATG	6 cut(s)	149, 189, 508, 664, 842, 1000
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HindIII	AAGCTT	2 cut(s)	108, 1079
HinfI	GANTC	3 cut(s)	376, 1087, 1115
HpaII	CCGG	3 cut(s)	477, 615, 943
HphI	GGTGA	2 cut(s)	422, 466
Hpy166II	GTNNAC	2 cut(s)	94, 988
Hpy188I	TCNGA	9 cut(s)	217, 303, 489, 546, 603, 622, 743, 881, 891
Hpy8I	GTNNAC	2 cut(s)	94, 988
HpyAV	CCTTC	1 cut(s)	947
HpyCH4III	ACNGT	2 cut(s)	470, 1172
HpyCH4V	TGCA	5 cut(s)	611, 633, 896, 960, 1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 744, 1127
HpyF3I	CTNAG	2 cut(s)	345, 545
Hsp92II	CATG	6 cut(s)	149, 189, 508, 664, 842, 1000
HspAI	GCGC	1 cut(s)	799
Kzo9I	GATC	3 cut(s)	139, 181, 603
LguI	GCTCTTC	2 cut(s)	217, 693
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	2 cut(s)	556, 924
LweI	GCATC	5 cut(s)	163, 639, 734, 844, 969
MaeI	CTAG	7 cut(s)	155, 236, 246, 561, 920, 983, 1064
MaeIII	GTNAC	2 cut(s)	202, 428
MalI	GATC	3 cut(s)	141, 183, 605
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	3 cut(s)	139, 181, 603
MboII	GAAGA	7 cut(s)	204, 290, 680, 854, 877, 1079, 1082
MflI	RGATCY	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	1130
MluCI	AATT	5 cut(s)	160, 253, 351, 411, 846
MluNI	TGGCCA	1 cut(s)	1130
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	2 cut(s)	571, 992
Mox20I	TGGCCA	1 cut(s)	1130
MroXI	GAANNNNTTC	1 cut(s)	978
MscI	TGGCCA	1 cut(s)	1130
MseI	TTAA	3 cut(s)	825, 1055, 1134
MslI	CAYNNNNRTG	1 cut(s)	46
Msp20I	TGGCCA	1 cut(s)	1130
MspI	CCGG	3 cut(s)	477, 615, 943
MspR9I	CCNGG	1 cut(s)	616
Mva1269I	GAATGC	1 cut(s)	812
MwoI	GCNNNNNNNGC	3 cut(s)	367, 744, 1127
NciI	CCSGG	1 cut(s)	616
NdeII	GATC	3 cut(s)	139, 181, 603
NlaIII	CATG	6 cut(s)	149, 189, 508, 664, 842, 1000
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	2 cut(s)	202, 428
NspI	RCATGY	1 cut(s)	1000
NspV	TTCGAA	1 cut(s)	1166
PagI	TCATGA	1 cut(s)	838
PciI	ACATGT	1 cut(s)	996
PciSI	GCTCTTC	2 cut(s)	217, 693
PctI	GAATGC	1 cut(s)	812
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	2 cut(s)	1087, 1115
PkrI	GCNGC	3 cut(s)	571, 685, 914
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PscI	ACATGT	1 cut(s)	996
PshAI	GACNNNNGTC	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	3 cut(s)	335, 526, 551
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	3 cut(s)	315, 449, 483
RsaNI	GTAC	3 cut(s)	314, 448, 482
RseI	CAYNNNNRTG	1 cut(s)	46
SapI	GCTCTTC	2 cut(s)	217, 693
SaqAI	TTAA	3 cut(s)	825, 1055, 1134
SatI	GCNGC	3 cut(s)	570, 684, 913
Sau3AI	GATC	3 cut(s)	139, 181, 603
Sau96I	GGNCC	3 cut(s)	335, 526, 551
ScaI	AGTACT	2 cut(s)	449, 483
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	616
SfaNI	GCATC	5 cut(s)	163, 639, 734, 844, 969
SfuI	TTCGAA	1 cut(s)	1166
SinI	GGWCC	2 cut(s)	335, 526
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	3 cut(s)	371, 451, 1082
SmoI	CTYRAG	3 cut(s)	371, 451, 1082
Sse9I	AATT	5 cut(s)	160, 253, 351, 411, 846
SsiI	CCGC	1 cut(s)	684
SspMI	CTAG	7 cut(s)	155, 236, 246, 561, 920, 983, 1064
StyD4I	CCNGG	1 cut(s)	614
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	470, 1172
TaqI	TCGA	1 cut(s)	1166
TasI	AATT	5 cut(s)	160, 253, 351, 411, 846
TatI	WGTACW	2 cut(s)	447, 481
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	1087, 1115
Tru1I	TTAA	3 cut(s)	825, 1055, 1134
Tru9I	TTAA	3 cut(s)	825, 1055, 1134
TscAI	CASTG	1 cut(s)	1015
TseFI	GTSAC	2 cut(s)	202, 428
TseI	GCWGC	2 cut(s)	569, 912
Tsp45I	GTSAC	2 cut(s)	202, 428
TspDTI	ATGAA	4 cut(s)	677, 855, 863, 917
TspRI	CASTG	1 cut(s)	1015
VpaK11BI	GGWCC	2 cut(s)	335, 526
XapI	RAATTY	3 cut(s)	253, 411, 846
XbaI	TCTAGA	1 cut(s)	1063
XceI	RCATGY	1 cut(s)	1000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XmaJI	CCTAGG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	7 cut(s)	155, 236, 246, 561, 920, 983, 1064
ZrmI	AGTACT	2 cut(s)	449, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.