Rorug02G0641800

Double-stranded RNA binding motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0019904
Physical Location & Seq
Forward (+)
75383166 .. 75386096
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0641800.1

Sequence Viewer

Length: 2931 bp
ATGGGACACAGTACTCCTTCGTTCTTACTTCTTTCACTTATACTACTGTCAGGAACAGTTGCACTTTCTTTCTGCAATGCAGATCCTAATGTGGGTTGCATGGATATCGAGAGGAAAGCCCTTCTGAAGCTTAGAGAGGGCCTCACTGATCCTTCAGACCGGCTTTCGTCTTGGGTTGGAGTAGATTGCTGCAAATGGAGAGGTATAGGCTGCAACGAGACAACTGGACGTGTGGACAGCCTTAATCTTCACAACCCTTATGCAGATGGTTGGGAGAGTGATGATGGAACACTCCATGCTTTAGGTGGTGAGATCAATCCTTCTTTGCTTGTTTTGAAAGATTTGCTTTACTTGGATTTGAGCATGAATAACTTCGGAGGTCTAGAACTTCCAAGTTTCATTGGATCACTAGAAAAAATGAAATACCTCAATCTATCTGGTGCATCTTTTGGTGGAGTAATTCCCGCCAATCTTGGAAACCTTTCAAAATTGCTTCATCTTGATCTCAGTAATAATGCTATTGAGAGTGATCTCAGATGGCTTCCCAGTCTTTCTTCCTTACAGTTTCTTCACTTGGGAGGAGCAGACCTTACCAAGGCTGCACCATATTGGCTTCCCACTGTTAATATGCTCCCTTCACTTCTTGAATTGCATTTGCCTGGTTGTGGATTTTCCATCCTTCCTCCTACTCTTCCTCATATCAATTTCACATCACTTTCGGTCCTTGACCTATCTGCCAATGATTTCAACTCCACACTTTCTCCCTGGTTGTTCAATCTGACTCAACTAGTCAATCTTGATCTAAGTTCGAACAATCTGAATGGAGAACTTCCAGAAACACTAGGGAGTTTGACTCATTTGAAGAACCTTGATTTGTCAGAGAATTCAGATATTGGAGGTCAGTTGCCGAGAAACTTGGGGATGCTATGCAATTTGCAGTCTCTTAAACTTTCAATCAACAAAGTTACTGGTGAGATAACCGAGTTCATTGATAGTATGTCTAGATGCACAAACAGCAGCTTAGAGAGGTTGGATGTAGGTTTTAACAGTCTCACAGGAAATTTGCCTAATTCATTGGGACTTCTTAAGAAGTTAAGATTCCTCAAGTTGTGGCACAACTCATTTCAGGGTTCAATCCCAGAATCTATTGGAAACTTGACATCTTTGGAGGACTTTTACCTTGCACAGAATAAAATGAGTGGAGTCATCCCAGAAAGTTTTGGGCAGCTCTCATCACTCGTTGCTGTAGATATGTCTGAAAATACATGGGAAGGTGTTGTAACAGAAGCTCATTTTCTGAAACTTCGAAGCTTAAAAGAGGTGTCAATCCAGAAAGCCTCCCCAAACATTTCCCTAGTTATCAACATTAGTTCTAAATGGATGCCTCCATTTAAATTGAGATACTTGTACCTTAGATCATGTCAAGTGGGTCCCAAATTTCCTACATGGCTTAGGAATCAGACTGAGCTGGTCACTGTGGTCCTGAATAATGCTAGGATTGCAGATACCATACCTGATTGGTTTTGGCTGTTGGATTTGGTATTAGATGAACTAAATCTCGCTTACAATCAACTAAGAGGCAAAGTGCCTAACTCGTTAAGGTTTAGCTATCCAGCTAATGCTGCTTTCAGTTCGAACCTGTTTAAGGGCCCCCTCCCACTCTGGTCACCTAACATTACAACACTCTACCTCAGGGATAATCAGTTTTCAGGGCCAATTCCTTCAAACATTGGTGACGTGATGCCCTCCTTGACTGATTTAGACATATCAAGGAACGGTTTGAGTGGAAGCATTCCCCTGTCTTTAGGTAATCTAAGCCTGTTGACGACCATGGTTCTCTCAAATAATTATTTGTCTGGTGAAATTCCTCATTTCTGGAACAGTATACCAGACTTGTATATTGTAGATATGTCAAACAACAGTCTCTCTGGTACAATTCCAAGATCCATGGATTCTCTTATTTCACTAAGATACTTGATACTCTCTAGTAACAACTTGTCAGGCGAAGTTCCTTCACTGAGAAACTGCACTGGCATGAAGAGTCTTGATCTTGGGGATAATAAGTTCTTTGGAAACATTCCGGCGTGGATAGGAGAAAGCATGCTCTCTTTATTGATTTTACGCTTGAGTTCCAACTCATTCACCGGAAGCATTCCTTCACAGTTGTGTGGCCTTTCCAGTCTTCACATATTGGACGTCTCACACAATAATCTTTCTGGTCATATTCCCCACTGTGTTGGTAATTTGAGTGGCTTGAAAACATCTGTAATCTCAGATACAGATACATCATACCTTTACCAGGGAAAACTGAAGGTAGTTGCAAAAGGAAGAGTGCAGGACTTCGATTCCACTCTTTATCTTGTTAATAGCCTAGATCTCTCAAGCAATAACTTATCAGGTGAGATGCCGAGGGAGCTAACAAGCCTAATAAAGTTGTGGACCTTGAATTTATCCATGAATCATCTAACAGGAGTAATTCCATCAAGGATTGGGAGCATGGAGTTGATAGAAACTCTTGATTTGTCAATAAACCAGCTTTCAGGTTCCATTCCACCGAGTATGGTTTCATTGACATTCTTGAGTCATCTAAACCTCTCATACAACAACTTGTCTGGAAAAATCCCAACAGGCAACCAGTTTAACAGCCTGGTTGATCCATCAATATATGAAGGCAATGCCGCTCTTTGTGGTTATCCGTTGCCTGATTGCCCAGTCAATGGCAGAACACTTCAGGGTCCAAGTGGACGTGGAGAGGACAATGGCTTTGAAATGTTGGGGTTCATCATTAGCATGGTGATCGGTTTTGTTATAGGGTTCTGGGGAGTTTGTGGCAGTTTGGTCATCAGCAAGTCTTGGAGGAAAATATATTTCCACTTCACTGATAAAATGATCGTTGCTTGTATACGGAAATATCAGAGACAGGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

976

Amino Acids

106.94

Weight (kDa)

5.62

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 37 - 72 5.5e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 171 - 326 1.9e-08 Leucine-rich repeat region
LRR_14 PF23598 340 - 488 2.1e-12 Leucine-rich repeat region
LRR_8 PF13855 368 - 421 3.6e-06 Leucine rich repeat
LRR_8 PF13855 679 - 738 2.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019904)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0452621
rosa_multiflora Rmu_sc0011540.1_g000001
rosa_roxburghii Rroxscaffold_6G00429660
rosa_rugosa Rorug02G0641800
rosa_samantha Rh3AG044300 Rh3BG046600
rosa_wichuraiana Rw3G003450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2199
AccB7I CCANNNNNTGG 1 cut(s) 2717
AccBSI CCGCTC 1 cut(s) 2681
AccI GTMKAC 2 cut(s) 1885, 2902
AciI CCGC 2 cut(s) 465, 2679
AclWI GGATC 5 cut(s) 77, 143, 412, 1938, 2648
AcsI RAATTY 6 cut(s) 883, 1060, 1436, 1863, 2446, 2925
AcuI CTGAAG 4 cut(s) 138, 146, 2330, 2714
AcyI GRCGYC 1 cut(s) 2196
AfaI GTAC 3 cut(s) 13, 1409, 1933
AfiI CCNNNNNNNGG 6 cut(s) 92, 595, 665, 1645, 2299, 2717
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 1 cut(s) 229
AhlI ACTAGT 1 cut(s) 787
AjiI CACGTC 3 cut(s) 230, 1738, 2747
AjnI CCWGG 4 cut(s) 658, 764, 2298, 2646
AleI CACNNNNGTG 1 cut(s) 2164
AloI GAACNNNNNNTCC 2 cut(s) 2048, 2080
Alw26I GTCTC 6 cut(s) 212, 945, 1055, 1928, 2203, 2911
AlwI GGATC 5 cut(s) 77, 143, 412, 1938, 2648
AoxI GGCC 4 cut(s) 139, 1648, 1712, 2170
ApaI GGGCCC 1 cut(s) 1652
ApeKI GCWGC 6 cut(s) 189, 210, 599, 1017, 1225, 1622
ApoI RAATTY 6 cut(s) 883, 1060, 1436, 1863, 2446, 2925
ArsI GACNNNNNNTTYG 2 cut(s) 2747, 2779
Asp700I GAANNNNTTC 2 cut(s) 371, 481
AspS9I GGNCC 9 cut(s) 139, 721, 1430, 1480, 1648, 1649, 1712, 2439, 2735
AsuHPI GGTGA 8 cut(s) 320, 983, 1659, 1745, 1871, 2134, 2411, 2806
AsuII TTCGAA 3 cut(s) 809, 1306, 1634
AvaII GGWCC 5 cut(s) 721, 1430, 1480, 2439, 2735
AxyI CCTNAGG 1 cut(s) 1691
BaeGI GKGCMC 1 cut(s) 1652
BanII GRGCYC 1 cut(s) 1652
BbsI GAAGAC 1 cut(s) 2174
BbvI GCAGC 6 cut(s) 176, 197, 586, 1029, 1237, 1609
BccI CCATC 6 cut(s) 260, 278, 531, 683, 2488, 2665
BcgI CGANNNNNNTGC 4 cut(s) 88, 122, 2779, 2813
BciT130I CCWGG 4 cut(s) 660, 766, 2300, 2648
BcoDI GTCTC 6 cut(s) 212, 945, 1055, 1928, 2203, 2911
BcuI ACTAGT 1 cut(s) 787
BfaI CTAG 9 cut(s) 383, 410, 788, 842, 1002, 1355, 1494, 1986, 2372
BfmI CTRYAG 1 cut(s) 1245
BfrI CTTAAG 1 cut(s) 1085
BglII AGATCT 1 cut(s) 2374
BisI GCNGC 7 cut(s) 190, 211, 600, 1018, 1226, 1623, 2679
BlsI GCNGC 7 cut(s) 191, 212, 601, 1019, 1227, 1624, 2680
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 4 cut(s) 660, 766, 2300, 2648
Bme18I GGWCC 5 cut(s) 721, 1430, 1480, 2439, 2735
BmgBI CACGTC 3 cut(s) 230, 1738, 2747
BmgT120I GGNCC 9 cut(s) 139, 721, 1430, 1480, 1648, 1649, 1712, 2439, 2735
BmiI GGNNCC 6 cut(s) 1431, 1432, 1650, 1651, 2545, 2736
BmrFI CCNGG 4 cut(s) 660, 766, 2300, 2648
BmrI ACTGGG 2 cut(s) 540, 2705
BmsI GCATC 6 cut(s) 452, 912, 995, 1371, 1731, 2394
BmuI ACTGGG 2 cut(s) 540, 2705
BpiI GAAGAC 1 cut(s) 2174
BplI GAGNNNNNCTC 4 cut(s) 126, 158, 838, 870
Bpu10I CCTNAGC 1 cut(s) 1451
Bpu14I TTCGAA 3 cut(s) 809, 1306, 1634
BpuEI CTTGAG 4 cut(s) 1088, 2146, 2365, 2599
BsaHI GRCGYC 1 cut(s) 2196
BsaJI CCNNGG 6 cut(s) 594, 764, 1830, 1947, 2299, 2408
BsaWI WCCGGW 1 cut(s) 2144
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 595, 665, 1645, 2299, 2717
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 7 cut(s) 229, 546, 973, 2035, 2178, 2635, 2711
Bse21I CCTNAGG 1 cut(s) 1691
Bse3DI GCAATG 2 cut(s) 82, 2680
BseBI CCWGG 4 cut(s) 660, 766, 2300, 2648
BseDI CCNNGG 6 cut(s) 594, 764, 1830, 1947, 2299, 2408
BseGI GGATG 5 cut(s) 675, 927, 1039, 1206, 1386
BseLI CCNNNNNNNGG 6 cut(s) 92, 595, 665, 1645, 2299, 2717
BseMI GCAATG 2 cut(s) 82, 2680
BseMII CTCAG 6 cut(s) 520, 547, 1455, 1705, 2009, 2286
BseNI ACTGG 7 cut(s) 229, 546, 973, 2035, 2178, 2635, 2711
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 1652
BseXI GCAGC 6 cut(s) 176, 197, 586, 1029, 1237, 1609
BsgI GTGCAG 3 cut(s) 585, 2011, 2354
BshFI GGCC 4 cut(s) 141, 1650, 1714, 2172
BsiSI CCGG 3 cut(s) 160, 2081, 2145
BslFI GGGAC 3 cut(s) 18, 1092, 1416
BslI CCNNNNNNNGG 6 cut(s) 92, 595, 665, 1645, 2299, 2717
BsmAI GTCTC 6 cut(s) 212, 945, 1055, 1928, 2203, 2911
BsmBI CGTCTC 1 cut(s) 2203
BsmFI GGGAC 3 cut(s) 18, 1092, 1416
BsmI GAATGC 2 cut(s) 1791, 2151
BsnI GGCC 4 cut(s) 141, 1650, 1714, 2172
Bsp119I TTCGAA 3 cut(s) 809, 1306, 1634
Bsp120I GGGCCC 1 cut(s) 1648
Bsp1286I GDGCHC 1 cut(s) 1652
Bsp19I CCATGG 2 cut(s) 1830, 1947
BspACI CCGC 2 cut(s) 465, 2679
BspANI GGCC 4 cut(s) 141, 1650, 1714, 2172
BspCNI CTCAG 6 cut(s) 519, 546, 1456, 1704, 2010, 2285
BspLI GGNNCC 6 cut(s) 1431, 1432, 1650, 1651, 2545, 2736
BspPI GGATC 5 cut(s) 77, 143, 412, 1938, 2648
BspT104I TTCGAA 3 cut(s) 809, 1306, 1634
BspTI CTTAAG 1 cut(s) 1085
BsrBI CCGCTC 1 cut(s) 2681
BsrDI GCAATG 2 cut(s) 82, 2680
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 7 cut(s) 229, 546, 973, 2035, 2178, 2635, 2711
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 6 cut(s) 594, 764, 1830, 1947, 2299, 2408
BssNAI GTATAC 2 cut(s) 1886, 2903
BssNI GRCGYC 1 cut(s) 2196
BssT1I CCWWGG 3 cut(s) 594, 1830, 1947
Bst1107I GTATAC 2 cut(s) 1886, 2903
Bst2UI CCWGG 4 cut(s) 660, 766, 2300, 2648
Bst6I CTCTTC 3 cut(s) 696, 2033, 2323
BstACI GRCGYC 1 cut(s) 2196
BstAFI CTTAAG 1 cut(s) 1085
BstBI TTCGAA 3 cut(s) 809, 1306, 1634
BstC8I GCNNGC 1 cut(s) 2102
BstDSI CCRYGG 2 cut(s) 1830, 1947
BstEII GGTNACC 1 cut(s) 1665
BstENI CCTNNNNNAGG 3 cut(s) 593, 1643, 2297
BstF5I GGATG 5 cut(s) 675, 927, 1039, 1206, 1386
BstMAI GTCTC 6 cut(s) 212, 945, 1055, 1928, 2203, 2911
BstMWI GCNNNNNNNGC 4 cut(s) 1014, 1499, 1622, 2413
BstNI CCWGG 4 cut(s) 660, 766, 2300, 2648
BstNSI RCATGY 1 cut(s) 2104
BstPI GGTNACC 1 cut(s) 1665
BstSCI CCNGG 4 cut(s) 658, 764, 2298, 2646
BstSFI CTRYAG 1 cut(s) 1245
BstSLI GKGCMC 1 cut(s) 1652
BstV1I GCAGC 6 cut(s) 176, 197, 586, 1029, 1237, 1609
BstV2I GAAGAC 1 cut(s) 2174
BstX2I RGATCY 3 cut(s) 82, 1943, 2374
BstXI CCANNNNNNTGG 1 cut(s) 2237
BstYI RGATCY 3 cut(s) 82, 1943, 2374
BstZ17I GTATAC 2 cut(s) 1886, 2903
Bsu36I CCTNAGG 1 cut(s) 1691
BsuRI GGCC 4 cut(s) 141, 1650, 1714, 2172
BtgI CCRYGG 2 cut(s) 1830, 1947
BtrI CACGTC 3 cut(s) 230, 1738, 2747
BtsCI GGATG 5 cut(s) 675, 927, 1039, 1206, 1386
BtsIMutI CAGTG 7 cut(s) 144, 618, 1473, 2015, 2028, 2230, 2877
Cac8I GCNNGC 1 cut(s) 2102
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 9 cut(s) 139, 721, 1430, 1480, 1648, 1649, 1712, 2439, 2735
Csp6I GTAC 3 cut(s) 12, 1408, 1932
CviQI GTAC 3 cut(s) 12, 1408, 1932
DraI TTTAAA 1 cut(s) 1393
Eam1104I CTCTTC 3 cut(s) 696, 2033, 2323
EarI CTCTTC 3 cut(s) 696, 2033, 2323
Eco130I CCWWGG 3 cut(s) 594, 1830, 1947
Eco24I GRGCYC 1 cut(s) 1652
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 5 cut(s) 721, 1430, 1480, 2439, 2735
Eco57I CTGAAG 4 cut(s) 138, 146, 2330, 2714
Eco81I CCTNAGG 1 cut(s) 1691
Eco91I GGTNACC 1 cut(s) 1665
EcoNI CCTNNNNNAGG 3 cut(s) 593, 1643, 2297
EcoO109I RGGNCCY 4 cut(s) 139, 1430, 1648, 1649
EcoO65I GGTNACC 1 cut(s) 1665
EcoRI GAATTC 1 cut(s) 883
EcoRII CCWGG 4 cut(s) 658, 764, 2298, 2646
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 3 cut(s) 594, 1830, 1947
EcoT38I GRGCYC 1 cut(s) 1652
ErhI CCWWGG 3 cut(s) 594, 1830, 1947
Esp3I CGTCTC 1 cut(s) 2203
FalI AAGNNNNNCTT 4 cut(s) 330, 362, 2140, 2172
FaqI GGGAC 3 cut(s) 18, 1092, 1416
FauI CCCGC 1 cut(s) 472
FblI GTMKAC 2 cut(s) 1885, 2902
Fnu4HI GCNGC 7 cut(s) 190, 211, 600, 1018, 1226, 1623, 2679
FokI GGATG 5 cut(s) 662, 934, 1046, 1193, 1393
FriOI GRGCYC 1 cut(s) 1652
Fsp4HI GCNGC 7 cut(s) 190, 211, 600, 1018, 1226, 1623, 2679
FspBI CTAG 9 cut(s) 383, 410, 788, 842, 1002, 1355, 1494, 1986, 2372
GluI GCNGC 7 cut(s) 190, 211, 600, 1018, 1226, 1623, 2679
HaeIII GGCC 4 cut(s) 141, 1650, 1714, 2172
HapII CCGG 3 cut(s) 160, 2081, 2145
Hin1I GRCGYC 1 cut(s) 2196
HincII GTYRAC 1 cut(s) 1824
HindII GTYRAC 1 cut(s) 1824
HindIII AAGCTT 2 cut(s) 128, 1309
HpaII CCGG 3 cut(s) 160, 2081, 2145
HphI GGTGA 8 cut(s) 320, 983, 1659, 1745, 1871, 2134, 2411, 2806
Hpy166II GTNNAC 6 cut(s) 235, 1824, 1886, 2439, 2744, 2903
Hpy8I GTNNAC 6 cut(s) 235, 1824, 1886, 2439, 2744, 2903
HpyCH4IV ACGT 4 cut(s) 229, 1737, 2196, 2746
HpyF10VI GCNNNNNNNGC 4 cut(s) 1014, 1499, 1622, 2413
HpySE526I ACGT 4 cut(s) 229, 1737, 2196, 2746
Hsp92I GRCGYC 1 cut(s) 2196
KflI GGGWCCC 1 cut(s) 1430
LmnI GCTCC 4 cut(s) 581, 636, 2413, 2493
Lsp1109I GCAGC 6 cut(s) 176, 197, 586, 1029, 1237, 1609
LweI GCATC 6 cut(s) 452, 912, 995, 1371, 1731, 2394
MaeI CTAG 9 cut(s) 383, 410, 788, 842, 1002, 1355, 1494, 1986, 2372
MaeII ACGT 4 cut(s) 229, 1737, 2196, 2746
MaeIII GTNAC 6 cut(s) 964, 1279, 1471, 1665, 1733, 1988
MbiI CCGCTC 1 cut(s) 2681
MboII GAAGA 8 cut(s) 239, 546, 560, 683, 874, 2050, 2174, 2340
MflI RGATCY 3 cut(s) 82, 1943, 2374
MhlI GDGCHC 1 cut(s) 1652
MlyI GAGTC 5 cut(s) 775, 847, 1212, 2050, 2590
MmeI TCCRAC 4 cut(s) 157, 1011, 1512, 2157
MroXI GAANNNNTTC 2 cut(s) 371, 481
MslI CAYNNNNRTG 3 cut(s) 2033, 2164, 2789
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 3 cut(s) 160, 2081, 2145
MspR9I CCNGG 4 cut(s) 660, 766, 2300, 2648
Mva1269I GAATGC 2 cut(s) 1791, 2151
MvaI CCWGG 4 cut(s) 660, 766, 2300, 2648
MwoI GCNNNNNNNGC 4 cut(s) 1014, 1499, 1622, 2413
NcoI CCATGG 2 cut(s) 1830, 1947
NlaIV GGNNCC 6 cut(s) 1431, 1432, 1650, 1651, 2545, 2736
NmeAIII GCCGAG 2 cut(s) 933, 2433
NmuCI GTSAC 3 cut(s) 1471, 1665, 1733
NspI RCATGY 1 cut(s) 2104
NspV TTCGAA 3 cut(s) 809, 1306, 1634
OliI CACNNNNGTG 1 cut(s) 2164
PaeI GCATGC 1 cut(s) 2104
PctI GAATGC 2 cut(s) 1791, 2151
PdmI GAANNNNTTC 2 cut(s) 371, 481
PfeI GAWTC 6 cut(s) 1098, 1142, 1456, 1952, 2345, 2458
PflMI CCANNNNNTGG 1 cut(s) 2717
PkrI GCNGC 7 cut(s) 191, 212, 601, 1019, 1227, 1624, 2680
PleI GAGTC 5 cut(s) 775, 847, 1211, 2049, 2589
PpsI GAGTC 5 cut(s) 775, 847, 1211, 2049, 2589
PpuMI RGGWCCY 1 cut(s) 1430
Psp5II RGGWCCY 1 cut(s) 1430
Psp6I CCWGG 4 cut(s) 658, 764, 2298, 2646
PspEI GGTNACC 1 cut(s) 1665
PspGI CCWGG 4 cut(s) 658, 764, 2298, 2646
PspN4I GGNNCC 6 cut(s) 1431, 1432, 1650, 1651, 2545, 2736
PspOMI GGGCCC 1 cut(s) 1648
PspPI GGNCC 9 cut(s) 139, 721, 1430, 1480, 1648, 1649, 1712, 2439, 2735
PspPPI RGGWCCY 1 cut(s) 1430
PsuI RGATCY 3 cut(s) 82, 1943, 2374
RsaI GTAC 3 cut(s) 13, 1409, 1933
RsaNI GTAC 3 cut(s) 12, 1408, 1932
RseI CAYNNNNRTG 3 cut(s) 2033, 2164, 2789
SatI GCNGC 7 cut(s) 190, 211, 600, 1018, 1226, 1623, 2679
Sau96I GGNCC 9 cut(s) 139, 721, 1430, 1480, 1648, 1649, 1712, 2439, 2735
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 5 cut(s) 775, 847, 1212, 2050, 2590
ScrFI CCNGG 4 cut(s) 660, 766, 2300, 2648
SduI GDGCHC 1 cut(s) 1652
SfaNI GCATC 6 cut(s) 452, 912, 995, 1371, 1731, 2394
SfcI CTRYAG 1 cut(s) 1245
SfuI TTCGAA 3 cut(s) 809, 1306, 1634
SinI GGWCC 5 cut(s) 721, 1430, 1480, 2439, 2735
SmiI ATTTAAAT 1 cut(s) 1393
SmiMI CAYNNNNRTG 3 cut(s) 2033, 2164, 2789
SmlI CTYRAG 5 cut(s) 1085, 1103, 2125, 2380, 2578
SmoI CTYRAG 5 cut(s) 1085, 1103, 2125, 2380, 2578
SpeI ACTAGT 1 cut(s) 787
SphI GCATGC 1 cut(s) 2104
SsiI CCGC 2 cut(s) 465, 2679
SspMI CTAG 9 cut(s) 383, 410, 788, 842, 1002, 1355, 1494, 1986, 2372
StyD4I CCNGG 4 cut(s) 658, 764, 2298, 2646
StyI CCWWGG 3 cut(s) 594, 1830, 1947
SwaI ATTTAAAT 1 cut(s) 1393
TaiI ACGT 4 cut(s) 232, 1740, 2199, 2749
TaqI TCGA 5 cut(s) 108, 809, 1306, 1634, 2343
TaqII GACCGA 1 cut(s) 709
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 2681
TfiI GAWTC 6 cut(s) 1098, 1142, 1456, 1952, 2345, 2458
TscAI CASTG 7 cut(s) 151, 625, 1480, 2022, 2035, 2237, 2884
TseFI GTSAC 3 cut(s) 1471, 1665, 1733
TseI GCWGC 6 cut(s) 189, 210, 599, 1017, 1225, 1622
Tsp45I GTSAC 3 cut(s) 1471, 1665, 1733
TspGWI ACGGA 2 cut(s) 2685, 2920
TspRI CASTG 7 cut(s) 151, 625, 1480, 2022, 2035, 2237, 2884
Van91I CCANNNNNTGG 1 cut(s) 2717
Vha464I CTTAAG 1 cut(s) 1085
VpaK11BI GGWCC 5 cut(s) 721, 1430, 1480, 2439, 2735
XagI CCTNNNNNAGG 3 cut(s) 593, 1643, 2297
XapI RAATTY 6 cut(s) 883, 1060, 1436, 1863, 2446, 2925
XbaI TCTAGA 2 cut(s) 382, 1001
XceI RCATGY 1 cut(s) 2104
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmiI GTMKAC 2 cut(s) 1885, 2902
XmnI GAANNNNTTC 2 cut(s) 371, 481
XspI CTAG 9 cut(s) 383, 410, 788, 842, 1002, 1355, 1494, 1986, 2372
ZraI GACGTC 1 cut(s) 2197
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.