Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016882

Physical Location & Seq

Genomic Coordinates Forward (+)

9574484 .. 9578613

Gene Structure 4130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCCTTGTTGCCCTTTACAGCTATCCCTCCCCATTTATGCTTTCGATTCTTCTAGAAAGACTGCGAACTTCAGACCTTGCCACTCTCGAATCGCGTGCTCCTCCTCTTCTCAATCTGGCATTCGCAAAGATGATGATGACGACATTGAAAACCAGGTCGATAATGGAAGGAACCGAGGCCAGCCTCAGCCGCATGTGGTCTTGGTAGAGAGATATGGAAATGGCACTGCTAAGAGGTATGTGGTAGAAGATGAACTGCAAGTACAGACATTTGTAGAGGAACCTAGTTCAAAGGCTAATACATCTCAGAGCTCGCATTTCTCCAATACTGAGTTATCGTGGCTTCCCGATATTGTTAAAGATTTTATCCTTCCTGCAGGCTTCCCAGGATCAGTTTCTGATGATTATTTATTGTACATGTTGTTACAGTTCCCTACCAATGTTACCGCATGGATTTGTCACACTTTAGTCACCTCAAGTCTACTAAAGGCTGTTGGTGTTGGCTCTTTCTCTGGCAGTACTGCTGCTGCTTCGGCTGCTGCCATCAGATGGGTTTCGAAAGATGGAATAGGAGCTGTTGGACGCTTATTTATCGGTGGGCGATTTGGGAATCTTTTTGATGATGATCCAAAGCAGTGGCGCTTATATGCAGACTTCATTGGCAGTGCAGGAAGCATTTTTGATCTTACTACACCGTTGTATCCTGCCTATTTCCTGCCATTGGCATCTCTTGGAAACCTTACCAAGGCTGTTGCTAGAGGACTAAAAGATCCTTCATTCCGTGTGATTCAAAGTCATTTTGCAATTTCGGGAAATCTGGGAGATGTAGCAGCAAAGGAAGAAGTTTGGGAAGTAACCGCTCAGCTGCTTGGCCTTGGTTTGGGCATACTTTTTCTGGATACACCTGGCCTTGTAAGATCATACCCAATTCTGGTAGCTACATGGATGGCCATGCGGCTTCTGCACCTCTGGTTACGCTATCAATCTCTATCAGTTCTCCAATTTAACTCGATAAATCTTAAGCGTGCTTGTATATTGGTAAAATCGCACGTATTACACTCTATCGTTCCTGTTTCATTTAGGTATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

363

Amino Acids

39.97

Weight (kDa)

8.17

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	112 - 352	1.6e-67	Vitamin B6 photo-protection and homoeostasis domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016882)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17330
malus_domestica	MD12G1102000.v1.1 MD14G1096100.v1.1
prunus_persica	Prupe.7G122200_v2.0.a1
pyrus_communis	pycom14g09410
rosa_chinensis	RchiOBHm_Chr3g0471461
rosa_laevigata	RLG00000024176
rosa_multiflora	Rmu_sc0006582.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409930
rosa_rugosa	Rorug03G0117900
rosa_samantha	Rh3AG167800 Rh3BG193300 Rh3DG182200
rosa_wichuraiana	Rw3G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccBSI	CCGCTC	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	481
AccII	CGCG	1 cut(s)	95
AciI	CCGC	4 cut(s)	191, 447, 858, 955
AclWI	GGATC	3 cut(s)	397, 620, 764
AcoI	YGGCCR	1 cut(s)	948
AcuI	CTGAAG	1 cut(s)	55
AfaI	GTAC	3 cut(s)	264, 416, 520
AfiI	CCNNNNNNNGG	5 cut(s)	549, 721, 745, 880, 931
AflII	CTTAAG	1 cut(s)	1019
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	3 cut(s)	149, 291, 791
AjnI	CCWGG	3 cut(s)	153, 385, 904
AluBI	AGCT	5 cut(s)	22, 312, 575, 865, 938
AluI	AGCT	5 cut(s)	22, 312, 575, 865, 938
Alw21I	GWGCWC	2 cut(s)	101, 314
AlwI	GGATC	3 cut(s)	397, 620, 764
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	4 cut(s)	178, 871, 907, 948
ApeKI	GCWGC	6 cut(s)	524, 527, 536, 539, 830, 865
AspLEI	GCGC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	463
AsuII	TTCGAA	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	683, 716
BalI	TGGCCA	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	101, 314
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	6 cut(s)	511, 514, 523, 526, 842, 852
BccI	CCATC	4 cut(s)	543, 551, 557, 940
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	3 cut(s)	155, 387, 906
BciVI	GTATCC	2 cut(s)	711, 892
BfaI	CTAG	3 cut(s)	54, 285, 756
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	643
BfrI	CTTAAG	1 cut(s)	1019
BfuI	GTATCC	2 cut(s)	711, 892
BisI	GCNGC	8 cut(s)	191, 525, 528, 537, 540, 831, 866, 956
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	8 cut(s)	192, 526, 529, 538, 541, 832, 867, 957
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	3 cut(s)	155, 387, 906
BmiI	GGNNCC	2 cut(s)	173, 282
BmrFI	CCNGG	3 cut(s)	155, 387, 906
BmsI	GCATC	1 cut(s)	734
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	460
BsaAI	YACGTR	1 cut(s)	1051
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	4 cut(s)	175, 385, 744, 874
Bsc4I	CCNNNNNNNGG	5 cut(s)	549, 721, 745, 880, 931
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	3 cut(s)	155, 387, 906
BseDI	CCNNGG	4 cut(s)	175, 385, 744, 874
BseGI	GGATG	1 cut(s)	951
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	5 cut(s)	549, 721, 745, 880, 931
BseMII	CTCAG	4 cut(s)	200, 320, 321, 875
BseRI	GAGGAG	2 cut(s)	91, 94
BseXI	GCAGC	6 cut(s)	511, 514, 523, 526, 842, 852
BsgI	GTGCAG	2 cut(s)	687, 947
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	4 cut(s)	180, 873, 909, 950
BsiHKAI	GWGCWC	2 cut(s)	101, 314
BslI	CCNNNNNNNGG	5 cut(s)	549, 721, 745, 880, 931
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	4 cut(s)	180, 873, 909, 950
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	2 cut(s)	101, 314
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	389, 625, 682, 769, 917
Bsp1720I	GCTNAGC	1 cut(s)	861
BspACI	CCGC	4 cut(s)	191, 447, 858, 955
BspANI	GGCC	4 cut(s)	180, 873, 909, 950
BspCNI	CTCAG	4 cut(s)	199, 319, 322, 874
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	173, 282
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	3 cut(s)	397, 620, 764
BspT104I	TTCGAA	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	1019
BsrBI	CCGCTC	1 cut(s)	860
BsrGI	TGTACA	1 cut(s)	414
BssECI	CCNNGG	4 cut(s)	175, 385, 744, 874
BssMI	GATC	5 cut(s)	389, 625, 682, 769, 917
BssT1I	CCWWGG	2 cut(s)	744, 874
Bst2UI	CCWGG	3 cut(s)	155, 387, 906
Bst4CI	ACNGT	2 cut(s)	429, 696
Bst6I	CTCTTC	1 cut(s)	112
BstAFI	CTTAAG	1 cut(s)	1019
BstAUI	TGTACA	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	1051
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	5 cut(s)	97, 182, 314, 379, 1026
BstDEI	CTNAG	5 cut(s)	186, 231, 306, 330, 861
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	1 cut(s)	951
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	5 cut(s)	392, 628, 685, 772, 920
BstMBI	GATC	5 cut(s)	389, 625, 682, 769, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 533, 536, 961
BstNI	CCWGG	3 cut(s)	155, 387, 906
BstNSI	RCATGY	2 cut(s)	197, 421
BstSCI	CCNGG	3 cut(s)	153, 385, 904
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	6 cut(s)	511, 514, 523, 526, 842, 852
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	769
BsuI	GTATCC	2 cut(s)	711, 892
BsuRI	GGCC	4 cut(s)	180, 873, 909, 950
BtsCI	GGATG	1 cut(s)	951
BtsI	GCAGTG	3 cut(s)	225, 641, 670
BtsIMutI	CAGTG	3 cut(s)	225, 641, 670
Cac8I	GCNNGC	5 cut(s)	97, 182, 314, 379, 1026
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	1 cut(s)	642
CseI	GACGC	1 cut(s)	591
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	263, 415, 519
CviAII	CATG	5 cut(s)	194, 418, 450, 942, 952
CviQI	GTAC	3 cut(s)	263, 415, 519
DdeI	CTNAG	5 cut(s)	186, 231, 306, 330, 861
DpnI	GATC	5 cut(s)	391, 627, 684, 771, 919
DpnII	GATC	5 cut(s)	389, 625, 682, 769, 917
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	744, 874
Eco24I	GRGCYC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRII	CCWGG	3 cut(s)	153, 385, 904
EcoT14I	CCWWGG	2 cut(s)	744, 874
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	2 cut(s)	744, 874
FaeI	CATG	5 cut(s)	197, 421, 453, 945, 955
FatI	CATG	5 cut(s)	193, 417, 449, 941, 951
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	8 cut(s)	191, 525, 528, 537, 540, 831, 866, 956
FokI	GGATG	1 cut(s)	958
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	8 cut(s)	191, 525, 528, 537, 540, 831, 866, 956
FspBI	CTAG	3 cut(s)	54, 285, 756
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	8 cut(s)	191, 525, 528, 537, 540, 831, 866, 956
HaeII	RGCGCY	1 cut(s)	643
HaeIII	GGCC	4 cut(s)	180, 873, 909, 950
HgaI	GACGC	1 cut(s)	591
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	5 cut(s)	197, 421, 453, 945, 955
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HinfI	GANTC	4 cut(s)	47, 90, 610, 787
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	4 cut(s)	74, 309, 400, 548
Hpy188III	TCNNGA	5 cut(s)	54, 87, 347, 810, 896
Hpy8I	GTNNAC	1 cut(s)	482
HpyAV	CCTTC	3 cut(s)	162, 380, 783
HpyCH4III	ACNGT	2 cut(s)	429, 696
HpyCH4IV	ACGT	1 cut(s)	1050
HpyCH4V	TGCA	6 cut(s)	259, 377, 650, 668, 803, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 533, 536, 961
HpyF3I	CTNAG	5 cut(s)	186, 231, 306, 330, 861
HpySE526I	ACGT	1 cut(s)	1050
Hsp92II	CATG	5 cut(s)	197, 421, 453, 945, 955
HspAI	GCGC	1 cut(s)	640
Kzo9I	GATC	5 cut(s)	389, 625, 682, 769, 917
LmnI	GCTCC	2 cut(s)	104, 572
Lsp1109I	GCAGC	6 cut(s)	511, 514, 523, 526, 842, 852
LweI	GCATC	1 cut(s)	734
MabI	ACCWGGT	1 cut(s)	153
MaeI	CTAG	3 cut(s)	54, 285, 756
MaeII	ACGT	1 cut(s)	1050
MaeIII	GTNAC	6 cut(s)	423, 442, 458, 469, 853, 972
MalI	GATC	5 cut(s)	391, 627, 684, 771, 919
MbiI	CCGCTC	1 cut(s)	860
MboI	GATC	5 cut(s)	389, 625, 682, 769, 917
MboII	GAAGA	4 cut(s)	42, 99, 260, 851
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	2 cut(s)	101, 314
MlsI	TGGCCA	1 cut(s)	950
MluCI	AATT	3 cut(s)	804, 927, 1001
MluNI	TGGCCA	1 cut(s)	950
MmeI	TCCRAC	1 cut(s)	559
Mox20I	TGGCCA	1 cut(s)	950
MscI	TGGCCA	1 cut(s)	950
MseI	TTAA	3 cut(s)	357, 1005, 1020
Msp20I	TGGCCA	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	865
MspCI	CTTAAG	1 cut(s)	1019
MspR9I	CCNGG	3 cut(s)	155, 387, 906
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	3 cut(s)	155, 387, 906
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	190, 533, 536, 961
NdeII	GATC	5 cut(s)	389, 625, 682, 769, 917
NlaIII	CATG	5 cut(s)	197, 421, 453, 945, 955
NlaIV	GGNNCC	2 cut(s)	173, 282
NmuCI	GTSAC	2 cut(s)	458, 469
NspI	RCATGY	2 cut(s)	197, 421
NspV	TTCGAA	1 cut(s)	557
PciI	ACATGT	1 cut(s)	417
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	4 cut(s)	47, 90, 610, 787
PflMI	CCANNNNNTGG	1 cut(s)	549
PkrI	GCNGC	8 cut(s)	192, 526, 529, 538, 541, 832, 867, 957
Ppu21I	YACGTR	1 cut(s)	1051
PscI	ACATGT	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	3 cut(s)	153, 385, 904
PspGI	CCWGG	3 cut(s)	153, 385, 904
PspN4I	GGNNCC	2 cut(s)	173, 282
PsrI	GAACNNNNNNTAC	2 cut(s)	246, 278
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	865
RsaI	GTAC	3 cut(s)	264, 416, 520
RsaNI	GTAC	3 cut(s)	263, 415, 519
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	357, 1005, 1020
SatI	GCNGC	8 cut(s)	191, 525, 528, 537, 540, 831, 866, 956
Sau3AI	GATC	5 cut(s)	389, 625, 682, 769, 917
SbfI	CCTGCAGG	1 cut(s)	379
ScaI	AGTACT	1 cut(s)	520
ScrFI	CCNGG	3 cut(s)	155, 387, 906
SdaI	CCTGCAGG	1 cut(s)	379
SduI	GDGCHC	2 cut(s)	101, 314
SexAI	ACCWGGT	1 cut(s)	153
SfaNI	GCATC	1 cut(s)	734
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	475, 1019
SmoI	CTYRAG	2 cut(s)	475, 1019
Sse8387I	CCTGCAGG	1 cut(s)	379
Sse9I	AATT	3 cut(s)	804, 927, 1001
SsiI	CCGC	4 cut(s)	191, 447, 858, 955
SspMI	CTAG	3 cut(s)	54, 285, 756
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	3 cut(s)	153, 385, 904
StyI	CCWWGG	2 cut(s)	744, 874
TaaI	ACNGT	2 cut(s)	429, 696
TaiI	ACGT	1 cut(s)	1053
TaqI	TCGA	5 cut(s)	45, 88, 159, 557, 1010
TasI	AATT	3 cut(s)	804, 927, 1001
TatI	WGTACW	3 cut(s)	262, 414, 518
TauI	GCSGC	2 cut(s)	193, 958
TfiI	GAWTC	4 cut(s)	47, 90, 610, 787
Tru1I	TTAA	3 cut(s)	357, 1005, 1020
Tru9I	TTAA	3 cut(s)	357, 1005, 1020
TscAI	CASTG	3 cut(s)	232, 641, 670
TseFI	GTSAC	2 cut(s)	458, 469
TseI	GCWGC	6 cut(s)	524, 527, 536, 539, 830, 865
Tsp45I	GTSAC	2 cut(s)	458, 469
TspDTI	ATGAA	4 cut(s)	267, 646, 765, 1065
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	3 cut(s)	232, 641, 670
Van91I	CCANNNNNTGG	1 cut(s)	549
Vha464I	CTTAAG	1 cut(s)	1019
XagI	CCTNNNNNAGG	1 cut(s)	743
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	2 cut(s)	197, 421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	3 cut(s)	54, 285, 756
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.