Rorug03G0142900

Belongs to the ATG8 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
11720674 .. 11723341
2668 bp
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UTR
Exon/CDS
Intron
Rorug03G0142900.1

Sequence Viewer

Length: 1536 bp
ATGGTTGATTCCCTCCTCACCGCCCTGTCAATGGAGAATAATCATCACCCATCAACGCTCTTGTCAATGGATTCCAGTGCCTCCTCACACGACGAATTGGATTTGGAAATGAATCGGCAGATCATACTTTCTCGGCCACCTGACATCAATTTGCCCCTGTCGGCCGAGCGCAGCCCACCGCCGCCGTCATGGAATTCGGAACCCTGTGATATTCTGGATGTTGGGCTTGGTCCACAGGTTTACGAGACTGAGAGCTTACTTGCGGTCCCCAAGGTTGGAAGGAAATGTGCCAAGCGGATAGACAGCATATGGGGTGCCTGGTTTTTCTTCAGTTTCTACTTCAAGCCTGCATTGCAGGAGAAATCAAAGGCCAAGATTGTCCGGGACAGTAATGGGGTATCAGGGTTTGAGAAAACTGATCTCAAGCTTGATGTTTTCATGGTGCAGCACGACATGGAGAACATGTACATGTGGGTTTTCAAGGAGAGGCCGGAGAATGCATTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGCCATTCCCGCCAAGGGGAGCGACCATTTCCATTTAGTGTTGACAAGGGTTTTGTTCGATCCCACAGGATGCAACGGAAGCATTATAGGGGCCTTTCAAATCCGCAGTGTGTGCATGGGATTGAGCTTGTCCGGGCACCTAATCTCATGGTTCTCGATGACGAAGAGCGCAAGAGGTGGATGGAGCTTACTGGAAGGGACATGAACTTCACAATCCCTATTGAAGCAGGTGATTTTAGCTCATGGAGAAACCTTCCAAATACAGATTTTGAGCTGGAGAGGCCACCACCTCCAATAAAGACTCTGCCAAACAACCACTCAAAGAAACTGCTGAACGGATCTGGATTGAACTTGTCTACCCAGCCATCTAACAACAACCATTGCGAGGCAAATGGAAATGGAAATGGTAATGGAATGGACCTATCTCCTGTCAGTAGCAAGAGGAGGAAGGAGTTTTTCCCAACTGGGAATGATGATGACTGCTACTTGGGTGTTAATCCTCCTTCTGATCGGGTCCTGGATATGGAAATCAACCCAAATGAGTCGCAGTGGCTACATCAATTTAGTGGTGTAATGAAGAACGTTTATGGGCCTGTTACAGCTGCAAAGACAATCTATGAGGATGATGTAGGTTATTTGATCATTATCAGCTTACCCTTTGTGGATCTTCAGAGGGTGAAAGTTTCTTGGAGGAACACTCTCACTCATGGTATCATCAAGGTCTCTTGTATAAGCACATCTCGCATGCCATTCATTAAGAGACATGATCGTACTTTCAGGCTTACAGATCCTGCCTCTGAGCACTGCCCTCCTGGAGAGTTTGTTAGAGAAATCCCTCTCTCCACCCGCATTCCTGAAGATGCTAACATAGAAGCTTATTACGACGGGCCAGGATCAGTGCTTGAGATTATGGTTCCAAAACTCCGCGTTGGACCAGAAGAACATGAGGTTCGTGTTTGCCTTCGCCCTCACCTTGGAGGCAACGATCTTATGTTGACTTAA
Functional Annotation

Protein Analysis

511

Amino Acids

58.0

Weight (kDa)

6.17

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 95 - 261 7.9e-103 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 377 - 485 8.8e-58 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019128)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0474721
rosa_multiflora Rmu_co8405031.1_g000001
rosa_roxburghii Rroxscaffold_6G00406940
rosa_rugosa Rorug03G0142900
rosa_samantha Rh3AG193200 Rh3BG223000 Rh3CG217800 Rh3DG219000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 752
Acc36I ACCTGC 1 cut(s) 752
AccB1I GGYRCC 2 cut(s) 314, 670
AccI GTMKAC 1 cut(s) 890
AccII CGCG 1 cut(s) 1461
AciI CCGC 9 cut(s) 21, 179, 182, 263, 295, 544, 638, 1381, 1459
AclI AACGTT 1 cut(s) 1116
AclWI GGATC 5 cut(s) 588, 880, 1206, 1316, 1435
AcoI YGGCCR 3 cut(s) 134, 162, 535
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 3 cut(s) 313, 1187, 1410
AfaI GTAC 2 cut(s) 467, 1306
AfiI CCNNNNNNNGG 7 cut(s) 31, 275, 549, 550, 919, 1057, 1508
AflIII ACRYGT 2 cut(s) 462, 468
AgsI TTSAA 5 cut(s) 343, 481, 633, 758, 883
AjnI CCWGG 4 cut(s) 317, 1050, 1345, 1423
Alw21I GWGCWC 1 cut(s) 1338
Alw26I GTCTC 3 cut(s) 239, 1261, 1288
AlwI GGATC 5 cut(s) 588, 880, 1206, 1316, 1435
AlwNI CAGNNNCTG 1 cut(s) 1325
AoxI GGCC 9 cut(s) 134, 162, 369, 488, 535, 625, 815, 1124, 1421
ApeKI GCWGC 4 cut(s) 171, 445, 514, 1136
ApoI RAATTY 1 cut(s) 193
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AspLEI GCGC 2 cut(s) 171, 705
AspS9I GGNCC 8 cut(s) 230, 265, 625, 952, 1048, 1124, 1421, 1466
AsuC2I CCSGG 2 cut(s) 383, 668
AsuHPI GGTGA 5 cut(s) 10, 38, 776, 1222, 1496
AvaII GGWCC 5 cut(s) 230, 265, 952, 1048, 1466
BaeGI GKGCMC 1 cut(s) 673
BalI TGGCCA 1 cut(s) 537
BanI GGYRCC 2 cut(s) 314, 670
Bbv12I GWGCWC 1 cut(s) 1338
BbvCI CCTCAGC 1 cut(s) 518
BbvI GCAGC 4 cut(s) 183, 457, 526, 1123
BccI CCATC 3 cut(s) 58, 709, 907
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 4 cut(s) 319, 1052, 1347, 1425
BclI TGATCA 1 cut(s) 1173
BcnI CCSGG 2 cut(s) 383, 668
BcoDI GTCTC 3 cut(s) 239, 1261, 1288
BfuAI ACCTGC 1 cut(s) 752
BisI GCNGC 5 cut(s) 172, 182, 446, 515, 1137
BlsI GCNGC 5 cut(s) 173, 183, 447, 516, 1138
Bme1390I CCNGG 6 cut(s) 319, 383, 668, 1052, 1347, 1425
Bme18I GGWCC 5 cut(s) 230, 265, 952, 1048, 1466
BmgT120I GGNCC 8 cut(s) 230, 265, 625, 952, 1048, 1124, 1421, 1466
BmiI GGNNCC 7 cut(s) 201, 267, 316, 626, 672, 1049, 1449
BmrFI CCNGG 6 cut(s) 319, 383, 668, 1052, 1347, 1425
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 3 cut(s) 501, 594, 1384
BmuI ACTGGG 1 cut(s) 1008
BplI GAGNNNNNCTC 2 cut(s) 1216, 1248
BpmI CTGGAG 2 cut(s) 830, 1368
Bpu10I CCTNAGC 1 cut(s) 518
BpuEI CTTGAG 2 cut(s) 407, 1457
BpuMI CCSGG 2 cut(s) 383, 668
BsaBI GATNNNNATC 1 cut(s) 1178
BsaI GGTCTC 1 cut(s) 1261
BsaJI CCNNGG 3 cut(s) 270, 547, 1507
BsaXI ACNNNNNCTCC 4 cut(s) 449, 479, 1341, 1371
Bsc4I CCNNNNNNNGG 7 cut(s) 31, 275, 549, 550, 919, 1057, 1508
Bse1I ACTGG 3 cut(s) 75, 730, 1003
Bse3DI GCAATG 2 cut(s) 350, 913
Bse8I GATNNNNATC 1 cut(s) 1178
BseBI CCWGG 4 cut(s) 319, 1052, 1347, 1425
BseDI CCNNGG 3 cut(s) 270, 547, 1507
BseGI GGATG 4 cut(s) 223, 609, 720, 1162
BseJI GATNNNNATC 1 cut(s) 1178
BseLI CCNNNNNNNGG 7 cut(s) 31, 275, 549, 550, 919, 1057, 1508
BseMI GCAATG 2 cut(s) 350, 913
BseMII CTCAG 3 cut(s) 240, 509, 1323
BseNI ACTGG 3 cut(s) 75, 730, 1003
BseRI GAGGAG 4 cut(s) 5, 73, 535, 991
BseSI GKGCMC 1 cut(s) 673
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 4 cut(s) 183, 457, 526, 1123
BseYI CCCAGC 1 cut(s) 894
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 1461
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 9 cut(s) 136, 164, 371, 490, 537, 627, 817, 1126, 1423
BshNI GGYRCC 2 cut(s) 314, 670
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 1338
BsiSI CCGG 3 cut(s) 382, 491, 667
BslFI GGGAC 3 cut(s) 251, 398, 746
BslI CCNNNNNNNGG 7 cut(s) 31, 275, 549, 550, 919, 1057, 1508
BsmAI GTCTC 3 cut(s) 239, 1261, 1288
BsmFI GGGAC 3 cut(s) 251, 398, 746
BsmI GAATGC 2 cut(s) 502, 1383
BsnI GGCC 9 cut(s) 136, 164, 371, 490, 537, 627, 817, 1126, 1423
Bso31I GGTCTC 1 cut(s) 1261
Bsp1286I GDGCHC 2 cut(s) 673, 1338
Bsp1407I TGTACA 1 cut(s) 465
BspACI CCGC 9 cut(s) 21, 179, 182, 263, 295, 544, 638, 1381, 1459
BspANI GGCC 9 cut(s) 136, 164, 371, 490, 537, 627, 817, 1126, 1423
BspCNI CTCAG 3 cut(s) 241, 510, 1324
BspFNI CGCG 1 cut(s) 1461
BspLI GGNNCC 7 cut(s) 201, 267, 316, 626, 672, 1049, 1449
BspMI ACCTGC 1 cut(s) 752
BspPI GGATC 5 cut(s) 588, 880, 1206, 1316, 1435
BspQI GCTCTTC 1 cut(s) 693
BspT107I GGYRCC 2 cut(s) 314, 670
BspTNI GGTCTC 1 cut(s) 1261
BsrDI GCAATG 2 cut(s) 350, 913
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 3 cut(s) 75, 730, 1003
BssECI CCNNGG 3 cut(s) 270, 547, 1507
BssT1I CCWWGG 3 cut(s) 270, 547, 1507
Bst2UI CCWGG 4 cut(s) 319, 1052, 1347, 1425
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 693
BstAPI GCANNNNNTGC 1 cut(s) 646
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 348, 1280
BstDEI CTNAG 3 cut(s) 249, 518, 1332
BstF5I GGATG 4 cut(s) 223, 609, 720, 1162
BstFNI CGCG 1 cut(s) 1461
BstHHI GCGC 2 cut(s) 171, 705
BstMAI GTCTC 3 cut(s) 239, 1261, 1288
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 6 cut(s) 352, 543, 613, 646, 814, 1275
BstNI CCWGG 4 cut(s) 319, 1052, 1347, 1425
BstNSI RCATGY 3 cut(s) 466, 472, 1282
BstSCI CCNGG 6 cut(s) 317, 381, 666, 1050, 1345, 1423
BstSLI GKGCMC 1 cut(s) 673
BstUI CGCG 1 cut(s) 1461
BstV1I GCAGC 4 cut(s) 183, 457, 526, 1123
BstX2I RGATCY 3 cut(s) 872, 1198, 1321
BstYI RGATCY 3 cut(s) 872, 1198, 1321
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 9 cut(s) 136, 164, 371, 490, 537, 627, 817, 1126, 1423
BtsCI GGATG 4 cut(s) 223, 609, 720, 1162
BtsI GCAGTG 3 cut(s) 647, 1088, 1336
BtsIMutI CAGTG 5 cut(s) 82, 647, 1088, 1336, 1437
BveI ACCTGC 1 cut(s) 752
Cac8I GCNNGC 2 cut(s) 348, 1280
CaiI CAGNNNCTG 1 cut(s) 1325
CfoI GCGC 2 cut(s) 171, 705
Cfr13I GGNCC 8 cut(s) 230, 265, 625, 952, 1048, 1124, 1421, 1466
Csp6I GTAC 2 cut(s) 466, 1305
CviQI GTAC 2 cut(s) 466, 1305
DdeI CTNAG 3 cut(s) 249, 518, 1332
EaeI YGGCCR 3 cut(s) 134, 162, 535
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 3 cut(s) 270, 547, 1507
Eco31I GGTCTC 1 cut(s) 1261
Eco47I GGWCC 5 cut(s) 230, 265, 952, 1048, 1466
Eco52I CGGCCG 1 cut(s) 162
Eco57I CTGAAG 3 cut(s) 313, 1187, 1410
EcoO109I RGGNCCY 2 cut(s) 625, 1048
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 4 cut(s) 317, 1050, 1345, 1423
EcoT14I CCWWGG 3 cut(s) 270, 547, 1507
EcoT22I ATGCAT 1 cut(s) 502
ErhI CCWWGG 3 cut(s) 270, 547, 1507
FaqI GGGAC 3 cut(s) 251, 398, 746
FauI CCCGC 2 cut(s) 551, 1388
FauNDI CATATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 1173
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 5 cut(s) 172, 182, 446, 515, 1137
FokI GGATG 4 cut(s) 230, 616, 727, 1169
Fsp4HI GCNGC 5 cut(s) 172, 182, 446, 515, 1137
GlaI GCGC 2 cut(s) 170, 704
GluI GCNGC 5 cut(s) 172, 182, 446, 515, 1137
GsaI CCCAGC 1 cut(s) 898
GsuI CTGGAG 2 cut(s) 830, 1368
HaeIII GGCC 9 cut(s) 136, 164, 371, 490, 537, 627, 817, 1126, 1423
HapII CCGG 3 cut(s) 382, 491, 667
HhaI GCGC 2 cut(s) 171, 705
Hin6I GCGC 2 cut(s) 169, 703
HinP1I GCGC 2 cut(s) 169, 703
HincII GTYRAC 2 cut(s) 577, 1530
HindII GTYRAC 2 cut(s) 577, 1530
HindIII AAGCTT 2 cut(s) 425, 1407
HinfI GANTC 5 cut(s) 8, 71, 112, 835, 1076
HpaII CCGG 3 cut(s) 382, 491, 667
HphI GGTGA 5 cut(s) 10, 38, 776, 1222, 1496
Hpy166II GTNNAC 5 cut(s) 233, 241, 577, 891, 1530
Hpy188I TCNGA 4 cut(s) 199, 1042, 1206, 1333
Hpy188III TCNNGA 4 cut(s) 215, 689, 876, 1388
Hpy8I GTNNAC 5 cut(s) 233, 241, 577, 891, 1530
Hpy99I CGWCG 2 cut(s) 95, 1421
HpyAV CCTTC 6 cut(s) 273, 723, 797, 976, 1047, 1505
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 1116
HpyCH4V TGCA 8 cut(s) 350, 355, 445, 500, 514, 607, 649, 1139
HpyF10VI GCNNNNNNNGC 6 cut(s) 352, 543, 613, 646, 814, 1275
HpyF3I CTNAG 3 cut(s) 249, 518, 1332
HpySE526I ACGT 1 cut(s) 1116
HspAI GCGC 2 cut(s) 169, 703
Ksp22I TGATCA 1 cut(s) 1173
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 2 cut(s) 553, 718
Lsp1109I GCAGC 4 cut(s) 183, 457, 526, 1123
LweI GCATC 3 cut(s) 501, 594, 1384
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 2 cut(s) 524, 1129
MboII GAAGA 7 cut(s) 319, 520, 710, 1123, 1193, 1403, 1484
MflI RGATCY 3 cut(s) 872, 1198, 1321
MhlI GDGCHC 2 cut(s) 673, 1338
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 4 cut(s) 95, 148, 193, 1094
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 2 cut(s) 829, 1085
MmeI TCCRAC 2 cut(s) 256, 1444
Mox20I TGGCCA 1 cut(s) 537
Mph1103I ATGCAT 1 cut(s) 502
MscI TGGCCA 1 cut(s) 537
MseI TTAA 3 cut(s) 1029, 1290, 1534
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 2 cut(s) 517, 1136
MspI CCGG 3 cut(s) 382, 491, 667
MspR9I CCNGG 6 cut(s) 319, 383, 668, 1052, 1347, 1425
Mva1269I GAATGC 2 cut(s) 502, 1383
MvaI CCWGG 4 cut(s) 319, 1052, 1347, 1425
MvnI CGCG 1 cut(s) 1461
MwoI GCNNNNNNNGC 6 cut(s) 352, 543, 613, 646, 814, 1275
NciI CCSGG 2 cut(s) 383, 668
NdeI CATATG 1 cut(s) 308
NlaIV GGNNCC 7 cut(s) 201, 267, 316, 626, 672, 1049, 1449
NmeAIII GCCGAG 2 cut(s) 112, 190
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 3 cut(s) 466, 472, 1282
PaeI GCATGC 1 cut(s) 1282
PaqCI CACCTGC 1 cut(s) 752
PciI ACATGT 2 cut(s) 462, 468
PciSI GCTCTTC 1 cut(s) 693
PctI GAATGC 2 cut(s) 502, 1383
PfeI GAWTC 3 cut(s) 8, 71, 112
PfoI TCCNGGA 3 cut(s) 381, 1050, 1345
PkrI GCNGC 5 cut(s) 173, 183, 447, 516, 1138
PleI GAGTC 2 cut(s) 829, 1084
PpsI GAGTC 2 cut(s) 829, 1084
PpuMI RGGWCCY 1 cut(s) 1048
PscI ACATGT 2 cut(s) 462, 468
Psp1406I AACGTT 1 cut(s) 1116
Psp5II RGGWCCY 1 cut(s) 1048
Psp6I CCWGG 4 cut(s) 317, 1050, 1345, 1423
PspFI CCCAGC 1 cut(s) 894
PspGI CCWGG 4 cut(s) 317, 1050, 1345, 1423
PspN4I GGNNCC 7 cut(s) 201, 267, 316, 626, 672, 1049, 1449
PspPI GGNCC 8 cut(s) 230, 265, 625, 952, 1048, 1124, 1421, 1466
PspPPI RGGWCCY 1 cut(s) 1048
PstNI CAGNNNCTG 1 cut(s) 1325
PsuI RGATCY 3 cut(s) 872, 1198, 1321
PvuII CAGCTG 2 cut(s) 517, 1136
RsaI GTAC 2 cut(s) 467, 1306
RsaNI GTAC 2 cut(s) 466, 1305
RseI CAYNNNNRTG 1 cut(s) 467
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 3 cut(s) 1029, 1290, 1534
SatI GCNGC 5 cut(s) 172, 182, 446, 515, 1137
Sau96I GGNCC 8 cut(s) 230, 265, 625, 952, 1048, 1124, 1421, 1466
SchI GAGTC 2 cut(s) 829, 1085
ScrFI CCNGG 6 cut(s) 319, 383, 668, 1052, 1347, 1425
SduI GDGCHC 2 cut(s) 673, 1338
SfaNI GCATC 3 cut(s) 501, 594, 1384
SinI GGWCC 5 cut(s) 230, 265, 952, 1048, 1466
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 422, 1436
SmoI CTYRAG 2 cut(s) 422, 1436
SphI GCATGC 1 cut(s) 1282
Sse9I AATT 4 cut(s) 95, 148, 193, 1094
SsiI CCGC 9 cut(s) 21, 179, 182, 263, 295, 544, 638, 1381, 1459
StyD4I CCNGG 6 cut(s) 317, 381, 666, 1050, 1345, 1423
StyI CCWWGG 3 cut(s) 270, 547, 1507
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 1119
TaqI TCGA 2 cut(s) 592, 690
TasI AATT 4 cut(s) 95, 148, 193, 1094
TatI WGTACW 1 cut(s) 465
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 3 cut(s) 8, 71, 112
Tru1I TTAA 3 cut(s) 1029, 1290, 1534
Tru9I TTAA 3 cut(s) 1029, 1290, 1534
TscAI CASTG 5 cut(s) 82, 647, 1088, 1343, 1437
TseI GCWGC 4 cut(s) 171, 445, 514, 1136
TspDTI ATGAA 6 cut(s) 125, 427, 545, 752, 1124, 1276
TspGWI ACGGA 2 cut(s) 625, 885
TspRI CASTG 5 cut(s) 82, 647, 1088, 1343, 1437
VpaK11BI GGWCC 5 cut(s) 230, 265, 952, 1048, 1466
XapI RAATTY 1 cut(s) 193
XceI RCATGY 3 cut(s) 466, 472, 1282
XmiI GTMKAC 1 cut(s) 890
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.