Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0019123

Physical Location & Seq

Genomic Coordinates Forward (+)

20933696 .. 20935321

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCAATGTAGTAAAGAATGTGTTAATGCATGTTCACCCTCCAAAAACATTCTTCCTCCTCTTGTTGCCCCTCCTATATTGTACCCTTCTTGCTTCACCGGCTGTGTTTCTCATTGCACTCGGGCCACTCAGCTTCCGGAGACACCCGTTGTCCCCACTACTAAGGTCGTTGATGGTTGCACTCATTATTGTGCCACCTCCATTGTTGCCAAATTCATCGCCGCTAAGCCTGATGAACGACCACATCGCGTTAATGTTCAAGACGACAAGGCCTACGACGCTCAGACTCAGTCTTCCACTCCGTACCGAAGTGTCACCGATCCTCAGCCGCTGGTTTCGCAGCCGATCCCTCCGTACGAGGACAAGTTCTCTATCAAAACGCCGTGCTATGATTTCGTGTGGAGCGGAGATCAGAGCCCTAGGATTCGGAGCGTTGTCGATGCCATCATGGCTAATAATCCCGGAAGGCCAATCCCGGCGACAAAGGTATCACAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

166

Amino Acids

18.13

Weight (kDa)

8.06

Isoelectric Point (pI)

61.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019123)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug03G0227800 Rorug03G0227900 Rorug03G0228000 Rorug03G0228000 Rorug03G0228100 Rorug03G0228200.1
rosa_samantha	Rh3DG308200
rosa_wichuraiana	Rw3G024650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	405
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	3 cut(s)	222, 329, 405
AclWI	GGATC	2 cut(s)	314, 340
AcsI	RAATTY	1 cut(s)	212
AfaI	GTAC	3 cut(s)	83, 305, 356
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	314, 340
AlwNI	CAGNNNCTG	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	120
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	3 cut(s)	123, 270, 467
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	212
AspA2I	CCTAGG	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	2 cut(s)	462, 476
AsuHPI	GGTGA	3 cut(s)	27, 88, 307
AvaI	CYCGRG	1 cut(s)	120
AvrII	CCTAGG	1 cut(s)	419
BaeI	ACNNNNGTAYC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	285
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	167, 452
BceAI	ACGGC	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	462, 476
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	449
BisI	GCNGC	3 cut(s)	222, 329, 341
BlnI	CCTAGG	1 cut(s)	419
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	3 cut(s)	223, 330, 342
Bme1390I	CCNGG	2 cut(s)	462, 476
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	462, 476
BmsI	GCATC	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuMI	CCSGG	2 cut(s)	462, 476
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	98
Bse3DI	GCAATG	2 cut(s)	11, 112
BseAI	TCCGGA	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	419
BseMI	GCAATG	2 cut(s)	11, 112
BseMII	CTCAG	4 cut(s)	143, 296, 302, 338
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	3 cut(s)	125, 272, 469
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	4 cut(s)	99, 137, 462, 476
BsiWI	CGTACG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	125, 272, 469
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	319, 345, 409
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	3 cut(s)	222, 329, 405
BspANI	GGCC	3 cut(s)	125, 272, 469
BspCNI	CTCAG	4 cut(s)	142, 295, 301, 337
BspEI	TCCGGA	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	249
BspPI	GGATC	2 cut(s)	314, 340
BsrBI	CCGCTC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	11, 112
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	3 cut(s)	319, 345, 409
BssT1I	CCWWGG	1 cut(s)	419
BstDEI	CTNAG	6 cut(s)	129, 162, 225, 282, 288, 324
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	322, 348, 412
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	319, 345, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 278, 337, 449
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	460, 474
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	125, 272, 469
BtgZI	GCGATG	2 cut(s)	202, 230
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	82, 304, 355
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	2 cut(s)	30, 448
CviQI	GTAC	3 cut(s)	82, 304, 355
DdeI	CTNAG	6 cut(s)	129, 162, 225, 282, 288, 324
DpnI	GATC	3 cut(s)	321, 347, 411
DpnII	GATC	3 cut(s)	319, 345, 409
Eco130I	CCWWGG	1 cut(s)	419
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	2 cut(s)	33, 451
FaiI	YATR	4 cut(s)	31, 77, 390, 449
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	29, 447
Fnu4HI	GCNGC	3 cut(s)	222, 329, 341
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	222, 329, 341
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	3 cut(s)	222, 329, 341
HaeIII	GGCC	3 cut(s)	125, 272, 469
HapII	CCGG	4 cut(s)	99, 137, 462, 476
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	33, 451
HinfI	GANTC	2 cut(s)	286, 424
HpaII	CCGG	4 cut(s)	99, 137, 462, 476
HphI	GGTGA	3 cut(s)	27, 88, 307
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	3 cut(s)	285, 414, 429
Hpy188III	TCNNGA	2 cut(s)	137, 260
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	96, 459
HpyCH4V	TGCA	4 cut(s)	4, 29, 117, 180
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 278, 337, 449
HpyF3I	CTNAG	6 cut(s)	129, 162, 225, 282, 288, 324
Hsp92II	CATG	2 cut(s)	33, 451
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	319, 345, 409
LmnI	GCTCC	2 cut(s)	402, 429
LpnPI	CCDG	6 cut(s)	112, 150, 243, 317, 475, 489
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	321, 347, 411
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	3 cut(s)	319, 345, 409
MboII	GAAGA	2 cut(s)	44, 285
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	2 cut(s)	212, 496
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	8 cut(s)	49, 66, 69, 81, 208, 333, 352, 360
Mph1103I	ATGCAT	1 cut(s)	31
MroI	TCCGGA	1 cut(s)	136
MseI	TTAA	2 cut(s)	24, 252
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	4 cut(s)	99, 137, 462, 476
MspR9I	CCNGG	2 cut(s)	462, 476
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	99, 278, 337, 449
NciI	CCSGG	2 cut(s)	462, 476
NdeII	GATC	3 cut(s)	319, 345, 409
NlaIII	CATG	2 cut(s)	33, 451
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	424
Pfl23II	CGTACG	1 cut(s)	354
PflFI	GACNNNGTC	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	223, 330, 342
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PspLI	CGTACG	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	289
RsaI	GTAC	3 cut(s)	83, 305, 356
RsaNI	GTAC	3 cut(s)	82, 304, 355
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	24, 252
SatI	GCNGC	3 cut(s)	222, 329, 341
Sau3AI	GATC	3 cut(s)	319, 345, 409
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	462, 476
SduI	GDGCHC	1 cut(s)	419
SetI	ASST	4 cut(s)	135, 168, 200, 489
SfaNI	GCATC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	2 cut(s)	212, 496
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	3 cut(s)	222, 329, 405
SspMI	CTAG	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	460, 474
StyI	CCWWGG	1 cut(s)	419
TaqI	TCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	212, 496
TauI	GCSGC	2 cut(s)	224, 331
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	24, 252
Tru9I	TTAA	2 cut(s)	24, 252
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	205, 249
TspGWI	ACGGA	2 cut(s)	291, 342
Tth111I	GACNNNGTC	1 cut(s)	289
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	33
XmaJI	CCTAGG	1 cut(s)	419
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.