Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003238

Physical Location & Seq

Genomic Coordinates Forward (+)

27205779 .. 27210936

Gene Structure 5158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0275300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCTGAGAAGAAAAGGTCTTGCAAAGATCTTCTGTTATACCACATTGAACTTTCAAAGAGACAAAACAAGATTAATAAAGTTAAAGAGAAGCAGATACTTGCAGCCAGACCAGGAAGCATTTCATGGTGCATCACGCACCTCTGGATCTGGATCACGCGCCTCTGGATCTGGATCGGCATCACGCGCCTCTGGATCTGGATCACGCGCTTCTTCTTCACGCGCCATCCCTCCGACTAAGGCTGCGGACCAAACTTTTGTTGAGGTATCTGGATCACGCGCCTCACTGCCATCTGGATCACAGTCCATCTCTCGGACTAAGGTTGCAGGCCAAACTTTTCTTGAGATATCTGGATCACGCGCCTCACTGCCATCTGGATCACGTGCCTCAGGATCTGGATCACGCGCCATCTCTCGGACTAAGGTTGCAGGCCAAACTTTTCTTGAGGTTGAGGTTGCCGCTCCTCCGGTCACCGCCCCTCCGGCCGCATATGATCCTCTCGCTCTCTCACTAGAGACAACTGGGCTTCCGCTTCAGATTGCACCGTCCCGTGGGCACTTTTTTTCACAGCTGGTTGTCGCTGAAGATTTCCGGCTGTCATTTCTGAGCATACAGCAGATGAAGACCATCGTATTTTACTACAGCCATATCTTGAGGATAGAGGGTTATGATTCGAAGAGCCACGCTGTGCTGTCTTCCTTTGTGAGCTGTAGGATGATGCCGAGGATGACGATACAGCAGGAACTTGAGGCTGCACGGAATCGGGTGAGGTTCGATCAAGGGGAGAGATGTAGGGGGACATATGCAGGCCTTTTTCTGACATTGCTGAGGACAGTCGCCCAATTGTGGGTTGAGTTGGAGGCACAGCATTTCAGTTTGTCGAGGGTGCTATCTATCAGGAAGGAGAGTTTGAAGATGTACTGCCAAATATTTGACGCGAGTCTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

ArfGap

Protein Analysis

316

Amino Acids

34.53

Weight (kDa)

10.41

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08680 AT1G08680 AT1G08680 AT1G08680 AT1G08680
fragaria_vesca	FvH4_1g29630 FvH4_1g29630 FvH4_1g29630 FvH4_1g29630 FvH4_1g29630 FvH4_1g29630 FvH4_1g29630 FvH4_1g29630
malus_domestica	MD12G1014100.v1.1 MD14G1011500.v1.1
prunus_persica	Prupe.7G026600_v2.0.a1 Prupe.7G026600_v2.0.a1 Prupe.7G026600_v2.0.a1 Prupe.7G026600_v2.0.a1 Prupe.7G026600_v2.0.a1 Prupe.7G026600_v2.0.a1 Prupe.7G026600_v2.0.a1 Prupe.7G026600_v2.0.a1
pyrus_communis	pycom12g01170 pycom14g01020
rosa_chinensis	RchiOBHm_Chr3g0495661
rosa_laevigata	RLG00000022602
rosa_multiflora	Rmu_sc0003546.1_g000012 Rmu_sc0005747.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390210
rosa_rugosa	Rorug03G0275300 Rorug03G0275400
rosa_samantha	Rh3AG322700 Rh3BG358000 Rh3CG354400 Rh3DG357800
rosa_wichuraiana	Rw3G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	461
AccII	CGCG	8 cut(s)	159, 186, 207, 222, 279, 360, 405, 938
AciI	CCGC	5 cut(s)	245, 459, 474, 486, 530
AcoI	YGGCCR	1 cut(s)	483
AcuI	CTGAAG	2 cut(s)	518, 603
AcvI	CACGTG	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	688
AfaI	GTAC	1 cut(s)	920
AfiI	CCNNNNNNNGG	5 cut(s)	312, 414, 551, 846, 847
AgsI	TTSAA	3 cut(s)	49, 56, 913
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	571, 708
AluI	AGCT	2 cut(s)	571, 708
Alw26I	GTCTC	3 cut(s)	54, 509, 947
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	4 cut(s)	328, 430, 483, 808
ApeKI	GCWGC	3 cut(s)	103, 242, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AseI	ATTAAT	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	7 cut(s)	161, 188, 209, 224, 281, 362, 407
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	463, 778
AsuII	TTCGAA	1 cut(s)	674
AvaII	GGWCC	1 cut(s)	247
AxyI	CCTNAGG	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	558
BbrPI	CACGTG	1 cut(s)	383
BbsI	GAAGAC	2 cut(s)	629, 687
BbvCI	CCTCAGC	1 cut(s)	827
BbvI	GCAGC	3 cut(s)	115, 229, 739
BccI	CCATC	6 cut(s)	233, 298, 314, 379, 416, 635
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	3 cut(s)	54, 509, 947
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	2 cut(s)	640, 709
BglI	GCCNNNNNGGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	5 cut(s)	104, 243, 459, 486, 753
BlsI	GCNGC	5 cut(s)	105, 244, 460, 487, 754
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	3 cut(s)	140, 188, 708
BmuI	ACTGGG	1 cut(s)	531
BoxI	GACNNNNGTC	1 cut(s)	939
BpiI	GAAGAC	2 cut(s)	629, 687
Bpu10I	CCTNAGC	1 cut(s)	827
Bpu14I	TTCGAA	1 cut(s)	674
BpuEI	CTTGAG	4 cut(s)	362, 464, 673, 767
BsaAI	YACGTR	1 cut(s)	383
BsaBI	GATNNNNATC	5 cut(s)	151, 172, 178, 199, 397
BsaJI	CCNNGG	2 cut(s)	550, 722
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	5 cut(s)	312, 414, 551, 846, 847
Bse1I	ACTGG	1 cut(s)	526
Bse21I	CCTNAGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	821
Bse8I	GATNNNNATC	5 cut(s)	151, 172, 178, 199, 397
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	550, 722
BseGI	GGATG	3 cut(s)	225, 720, 732
BseJI	GATNNNNATC	5 cut(s)	151, 172, 178, 199, 397
BseLI	CCNNNNNNNGG	5 cut(s)	312, 414, 551, 846, 847
BseMI	GCAATG	1 cut(s)	821
BseMII	CTCAG	3 cut(s)	402, 596, 818
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	453
BseSI	GKGCMC	1 cut(s)	558
BseX3I	CGGCCG	1 cut(s)	483
BseXI	GCAGC	3 cut(s)	115, 229, 739
BsgI	GTGCAG	1 cut(s)	738
Bsh1236I	CGCG	8 cut(s)	159, 186, 207, 222, 279, 360, 405, 938
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	4 cut(s)	330, 432, 485, 810
BsiEI	CGRYCG	1 cut(s)	486
BsiSI	CCGG	3 cut(s)	467, 482, 592
BslFI	GGGAC	2 cut(s)	532, 811
BslI	CCNNNNNNNGG	5 cut(s)	312, 414, 551, 846, 847
BsmAI	GTCTC	3 cut(s)	54, 509, 947
BsmFI	GGGAC	2 cut(s)	532, 811
BsnI	GGCC	4 cut(s)	330, 432, 485, 810
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	558
BspACI	CCGC	5 cut(s)	245, 459, 474, 486, 530
BspANI	GGCC	4 cut(s)	330, 432, 485, 810
BspCNI	CTCAG	3 cut(s)	401, 597, 819
BspFNI	CGCG	8 cut(s)	159, 186, 207, 222, 279, 360, 405, 938
BspQI	GCTCTTC	1 cut(s)	671
BspT104I	TTCGAA	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	821
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	550, 722
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	3 cut(s)	303, 546, 835
Bst6I	CTCTTC	1 cut(s)	671
BstBAI	YACGTR	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	328, 430, 808
BstDEI	CTNAG	7 cut(s)	5, 237, 318, 388, 420, 605, 827
BstDSI	CCRYGG	1 cut(s)	550
BstEII	GGTNACC	1 cut(s)	469
BstF5I	GGATG	3 cut(s)	225, 720, 732
BstFNI	CGCG	8 cut(s)	159, 186, 207, 222, 279, 360, 405, 938
BstHHI	GCGC	7 cut(s)	161, 188, 209, 224, 281, 362, 407
BstMAI	GTCTC	3 cut(s)	54, 509, 947
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 482
BstNI	CCWGG	1 cut(s)	113
BstPAI	GACNNNNGTC	1 cut(s)	939
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	640, 709
BstSLI	GKGCMC	1 cut(s)	558
BstUI	CGCG	8 cut(s)	159, 186, 207, 222, 279, 360, 405, 938
BstV1I	GCAGC	3 cut(s)	115, 229, 739
BstV2I	GAAGAC	2 cut(s)	629, 687
BstX2I	RGATCY	5 cut(s)	27, 146, 167, 194, 392
BstYI	RGATCY	5 cut(s)	27, 146, 167, 194, 392
BstZI	CGGCCG	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	388
BsuRI	GGCC	4 cut(s)	330, 432, 485, 810
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	225, 720, 732
BtsI	GCAGTG	2 cut(s)	284, 365
BtsIMutI	CAGTG	2 cut(s)	284, 365
Cac8I	GCNNGC	3 cut(s)	328, 430, 808
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	7 cut(s)	161, 188, 209, 224, 281, 362, 407
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	1 cut(s)	919
CviAII	CATG	1 cut(s)	125
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	7 cut(s)	5, 237, 318, 388, 420, 605, 827
DraIII	CACNNNGTG	1 cut(s)	688
EaeI	YGGCCR	1 cut(s)	483
EagI	CGGCCG	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
EclXI	CGGCCG	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	810
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	483
Eco57I	CTGAAG	2 cut(s)	518, 603
Eco72I	CACGTG	1 cut(s)	383
Eco81I	CCTNAGG	1 cut(s)	388
Eco91I	GGTNACC	1 cut(s)	469
EcoO65I	GGTNACC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	348
FaeI	CATG	1 cut(s)	128
FaiI	YATR	9 cut(s)	39, 126, 490, 492, 611, 648, 669, 802, 804
FaqI	GGGAC	2 cut(s)	532, 811
FatI	CATG	1 cut(s)	124
FauNDI	CATATG	2 cut(s)	490, 802
Fnu4HI	GCNGC	5 cut(s)	104, 243, 459, 486, 753
FokI	GGATG	3 cut(s)	212, 727, 739
Fsp4HI	GCNGC	5 cut(s)	104, 243, 459, 486, 753
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	7 cut(s)	160, 187, 208, 223, 280, 361, 406
GluI	GCNGC	5 cut(s)	104, 243, 459, 486, 753
HaeIII	GGCC	4 cut(s)	330, 432, 485, 810
HapII	CCGG	3 cut(s)	467, 482, 592
HgaI	GACGC	1 cut(s)	944
HhaI	GCGC	7 cut(s)	161, 188, 209, 224, 281, 362, 407
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	7 cut(s)	159, 186, 207, 222, 279, 360, 405
HinP1I	GCGC	7 cut(s)	159, 186, 207, 222, 279, 360, 405
HinfI	GANTC	3 cut(s)	671, 760, 940
HpaII	CCGG	3 cut(s)	467, 482, 592
HphI	GGTGA	2 cut(s)	463, 778
Hpy188I	TCNGA	6 cut(s)	234, 315, 417, 537, 606, 819
HpyAV	CCTTC	1 cut(s)	895
HpyCH4III	ACNGT	3 cut(s)	303, 546, 835
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	8 cut(s)	23, 103, 131, 326, 428, 542, 755, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 482
HpyF3I	CTNAG	7 cut(s)	5, 237, 318, 388, 420, 605, 827
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	7 cut(s)	159, 186, 207, 222, 279, 360, 405
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	3 cut(s)	115, 229, 739
LweI	GCATC	3 cut(s)	140, 188, 708
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	469
MbiI	CCGCTC	1 cut(s)	461
MboII	GAAGA	9 cut(s)	21, 22, 204, 207, 596, 634, 687, 688, 925
MfeI	CAATTG	1 cut(s)	842
MflI	RGATCY	5 cut(s)	27, 146, 167, 194, 392
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	1 cut(s)	842
MlyI	GAGTC	1 cut(s)	949
MmeI	TCCRAC	2 cut(s)	257, 837
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	2 cut(s)	74, 83
MspA1I	CMGCKG	1 cut(s)	571
MspI	CCGG	3 cut(s)	467, 482, 592
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	842
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	8 cut(s)	159, 186, 207, 222, 279, 360, 405, 938
MwoI	GCNNNNNNNGC	2 cut(s)	185, 482
NdeI	CATATG	2 cut(s)	490, 802
NlaIII	CATG	1 cut(s)	128
NmeAIII	GCCGAG	1 cut(s)	747
NmuCI	GTSAC	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	810
PciSI	GCTCTTC	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	671, 760
PkrI	GCNGC	5 cut(s)	105, 244, 460, 487, 754
PleI	GAGTC	1 cut(s)	948
PmaCI	CACGTG	1 cut(s)	383
PmlI	CACGTG	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	948
Ppu21I	YACGTR	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	939
PshBI	ATTAAT	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	111
PspCI	CACGTG	1 cut(s)	383
PspEI	GGTNACC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	5 cut(s)	27, 146, 167, 194, 392
PvuII	CAGCTG	1 cut(s)	571
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	2 cut(s)	74, 83
SatI	GCNGC	5 cut(s)	104, 243, 459, 486, 753
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	949
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	3 cut(s)	140, 188, 708
SfcI	CTRYAG	2 cut(s)	640, 709
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	1 cut(s)	247
SmlI	CTYRAG	4 cut(s)	341, 443, 652, 746
SmoI	CTYRAG	4 cut(s)	341, 443, 652, 746
Sse9I	AATT	1 cut(s)	842
SseBI	AGGCCT	1 cut(s)	810
SsiI	CCGC	5 cut(s)	245, 459, 474, 486, 530
SspI	AATATT	1 cut(s)	930
SspMI	CTAG	1 cut(s)	512
StuI	AGGCCT	1 cut(s)	810
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	303, 546, 835
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	3 cut(s)	674, 774, 881
TasI	AATT	1 cut(s)	842
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	2 cut(s)	461, 488
TfiI	GAWTC	2 cut(s)	671, 760
Tru1I	TTAA	2 cut(s)	74, 83
Tru9I	TTAA	2 cut(s)	74, 83
TscAI	CASTG	2 cut(s)	291, 372
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	3 cut(s)	103, 242, 752
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	113, 635
TspGWI	ACGGA	1 cut(s)	772
TspRI	CASTG	2 cut(s)	291, 372
VpaK11BI	GGWCC	1 cut(s)	247
VspI	ATTAAT	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.