Rh3CG354400

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003238
Physical Location & Seq
Forward (+)
43235106 .. 43250894
15789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG354400.1

Sequence Viewer

Length: 1467 bp
ATGAAAAGCATCAATATGGTATTATTCAGTCGTGAATTCACTCATCGCGTGAAGTCTGTATCTATGTCAAAGTTTTCATCACAAGAAGTCGAGGCCCTTGAAAATGGTGGTAATCAGCGTGCAAGGGAAATATATTTGAAAGATTGGGACCTTCAAAGGCAGCGATTTCCAGACAGCAGTAAGGTTGATAAAATCCGTGAGTTCATAAGAAGTGTATATGTCGATAGAAAATATGCTGGAGGAAGAACCTCAGAAAAGCCTCCAAGAGATATGCAGAACCATAGAATCCGTGAAGATGAGACAAGACGTGCCAGTTCATATCATTCTTATTCTCAAAGTCCACCTTATGATTATCAGTATGAAGATCGACGGTATGGGAAGCAAGCTGCTGCACTTACCAGGAAGCCTGGTTCTGATCGAGGTCGATATGAAGGAAAGCTGTCGAGTTTTGGTTACAGTGCTGATCGTTTAAGTGAACAAATGTATGAGGACAGGTTTGAAAATGACGGCTCTGGTTCTAGAGTTTCAGATTACTCTGTGTCAAGTGGAGGTGATGCATTCAGATCTGGAGTACAATCTCCTAATTTTCAGAAGGACATTGGATCTAGCAGTCCATCTTTCCAGCCTTCGCAGGATAATAGTGATGTAAGGTGCCAAGCAAAAAGTACAGTTTTGGAGGCAAATGTCAACAGAGATGCAGGGGTCATGCCATTTCCGCAGAGAACTATATCCTCGGGAAGTTTTGGCTCAGTGGATAGCTATTCCATGTCTCTCAAGTCATTTAATTCAGGCGGTTTAACAGATGCTGTCTCTGAACCTGAACAATATGCTGGAGCCGTCCAGGATAAACCAACTTCTTTATCATCTCTTTTTGGAACTTCTGATAGTTTGGATCTCTTCAAAGCCCCGGTTCAACCGGAAGATATCTCTTCTGCTGCTTCATCTATTGATTTGTTTCAGTTACCAGCCGCATCTTCATCTCTTTCCATAGATTCATTTCAACCTTCTGTATTGTCTTCTGCTACGTCTTTGAATGTATACCAACCTCCTCAGACATCAACACCTTTGGATTTATTTGCTGATTTTCCTCAGCACCTGTCAACTTCCAAACAAGTACAAGAATCTGCCCCTAAAAGTGAAGGATGGGCAACTTTTGATACACCTCACCCCTCAGCTTCTATTTCAGGGACTGATAATATTATACCTGCAAATATAGCTTCCAATGATGAAGGTTCTATTGGAAATTTTGATCTATTCTTGTCATCAAATACAGGCATGCAGTGGCCATCGTTTGCGAATATTTCTAATCCATGGAGTGATAATTTGCACGAATTTACAGCTCCAAATGCCACAGCAAGTCCCCAGGTAAGCCTTGTCATGATCAGAACTACACCCTCATTAGATCCTATTGGGGTTTTCGCAAGATGGATAGCTGGTGCACAGTTGATTTTTAATTTACGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05164 map05164
Pfam Domains
Protein Families
ArfGap

Protein Analysis

488

Amino Acids

53.66

Weight (kDa)

5.35

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 14 - 79 1.2e-10 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1213
AccB1I GGYRCC 1 cut(s) 651
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 1 cut(s) 48
AciI CCGC 3 cut(s) 716, 792, 969
AclWI GGATC 3 cut(s) 610, 900, 1397
AcoI YGGCCR 1 cut(s) 1283
AcsI RAATTY 3 cut(s) 35, 1243, 1331
AfaI GTAC 3 cut(s) 573, 667, 1116
AgsI TTSAA 8 cut(s) 101, 139, 155, 500, 901, 914, 1001, 1033
AjiI CACGTC 1 cut(s) 308
AjnI CCWGG 4 cut(s) 398, 406, 840, 1362
AjuI GAANNNNNNNTTGG 2 cut(s) 1221, 1253
AloI GAACNNNNNNTCC 2 cut(s) 394, 426
AluBI AGCT 7 cut(s) 386, 439, 759, 1175, 1217, 1340, 1433
AluI AGCT 7 cut(s) 386, 439, 759, 1175, 1217, 1340, 1433
Alw21I GWGCWC 1 cut(s) 1441
Alw26I GTCTC 3 cut(s) 293, 774, 814
Alw44I GTGCAC 1 cut(s) 1437
AlwI GGATC 3 cut(s) 610, 900, 1397
AlwNI CAGNNNCTG 3 cut(s) 806, 1096, 1190
Ama87I CYCGRG 1 cut(s) 733
AoxI GGCC 2 cut(s) 93, 1283
ApaLI GTGCAC 1 cut(s) 1437
ApeKI GCWGC 4 cut(s) 160, 386, 389, 935
ApoI RAATTY 3 cut(s) 35, 1243, 1331
AspS9I GGNCC 2 cut(s) 94, 148
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 2 cut(s) 563, 1157
AvaI CYCGRG 1 cut(s) 733
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 1441
BalI TGGCCA 1 cut(s) 1285
BanI GGYRCC 1 cut(s) 651
BbsI GAAGAC 1 cut(s) 1008
Bbv12I GWGCWC 1 cut(s) 1441
BbvCI CCTCAGC 2 cut(s) 1089, 1171
BbvI GCAGC 4 cut(s) 172, 373, 376, 922
BccI CCATC 4 cut(s) 622, 1137, 1294, 1419
BceAI ACGGC 2 cut(s) 523, 821
BciT130I CCWGG 4 cut(s) 400, 408, 842, 1364
BclI TGATCA 1 cut(s) 1380
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 3 cut(s) 293, 774, 814
BfaI CTAG 2 cut(s) 519, 606
BfuAI ACCTGC 1 cut(s) 1213
BglII AGATCT 1 cut(s) 563
BisI GCNGC 5 cut(s) 161, 387, 390, 936, 969
BlsI GCNGC 5 cut(s) 162, 388, 391, 937, 970
Bme1390I CCNGG 5 cut(s) 400, 408, 842, 908, 1364
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 733
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 94, 148
BmiI GGNNCC 3 cut(s) 149, 653, 835
BmrFI CCNGG 5 cut(s) 400, 408, 842, 908, 1364
BmsI GCATC 5 cut(s) 18, 544, 685, 793, 980
BpiI GAAGAC 1 cut(s) 1008
BpmI CTGGAG 3 cut(s) 258, 588, 852
Bpu10I CCTNAGC 2 cut(s) 1089, 1171
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 908
BsaJI CCNNGG 4 cut(s) 732, 906, 1310, 1362
BsaWI WCCGGW 1 cut(s) 916
Bse1I ACTGG 1 cut(s) 312
BseBI CCWGG 4 cut(s) 400, 408, 842, 1364
BseDI CCNNGG 4 cut(s) 732, 906, 1310, 1362
BseGI GGATG 1 cut(s) 1148
BseMII CTCAG 5 cut(s) 264, 762, 1064, 1103, 1185
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 1038
BseSI GKGCMC 1 cut(s) 1441
BseXI GCAGC 4 cut(s) 172, 373, 376, 922
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 95, 1285
BshNI GGYRCC 1 cut(s) 651
BsiHKAI GWGCWC 1 cut(s) 1441
BsiHKCI CYCGRG 1 cut(s) 733
BsiSI CCGG 2 cut(s) 908, 917
BslFI GGGAC 3 cut(s) 161, 1201, 1344
BsmAI GTCTC 3 cut(s) 293, 774, 814
BsmFI GGGAC 3 cut(s) 161, 1201, 1344
BsmI GAATGC 1 cut(s) 557
BsnI GGCC 2 cut(s) 95, 1285
BsoBI CYCGRG 1 cut(s) 733
Bsp1286I GDGCHC 1 cut(s) 1441
Bsp143I GATC 9 cut(s) 364, 415, 463, 563, 602, 892, 1249, 1380, 1402
Bsp19I CCATGG 1 cut(s) 1310
BspACI CCGC 3 cut(s) 716, 792, 969
BspANI GGCC 2 cut(s) 95, 1285
BspCNI CTCAG 5 cut(s) 263, 761, 1063, 1102, 1184
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 1 cut(s) 1377
BspLI GGNNCC 3 cut(s) 149, 653, 835
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 3 cut(s) 610, 900, 1397
BspT107I GGYRCC 1 cut(s) 651
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 732, 906, 1310, 1362
BssMI GATC 9 cut(s) 364, 415, 463, 563, 602, 892, 1249, 1380, 1402
BssNAI GTATAC 1 cut(s) 1039
BssT1I CCWWGG 1 cut(s) 1310
Bst1107I GTATAC 1 cut(s) 1039
Bst2UI CCWGG 4 cut(s) 400, 408, 842, 1364
Bst4CI ACNGT 4 cut(s) 372, 458, 670, 1443
Bst6I CTCTTC 2 cut(s) 902, 934
BstC8I GCNNGC 3 cut(s) 120, 384, 1277
BstDEI CTNAG 5 cut(s) 250, 748, 1050, 1089, 1171
BstDSI CCRYGG 1 cut(s) 1310
BstF5I GGATG 1 cut(s) 1148
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 9 cut(s) 367, 418, 466, 566, 605, 895, 1252, 1383, 1405
BstMAI GTCTC 3 cut(s) 293, 774, 814
BstMBI GATC 9 cut(s) 364, 415, 463, 563, 602, 892, 1249, 1380, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 715, 1214, 1346
BstNI CCWGG 4 cut(s) 400, 408, 842, 1364
BstNSI RCATGY 1 cut(s) 1279
BstSCI CCNGG 5 cut(s) 398, 406, 840, 906, 1362
BstSLI GKGCMC 1 cut(s) 1441
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 172, 373, 376, 922
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 4 cut(s) 563, 602, 892, 1402
BstYI RGATCY 4 cut(s) 563, 602, 892, 1402
BstZ17I GTATAC 1 cut(s) 1039
BsuRI GGCC 2 cut(s) 95, 1285
BtgI CCRYGG 1 cut(s) 1310
BtgZI GCGATG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 1148
BtsI GCAGTG 1 cut(s) 1286
BtsIMutI CAGTG 3 cut(s) 463, 756, 1286
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 3 cut(s) 120, 384, 1277
CaiI CAGNNNCTG 3 cut(s) 806, 1096, 1190
CciI TCATGA 1 cut(s) 1377
Cfr13I GGNCC 2 cut(s) 94, 148
Csp6I GTAC 3 cut(s) 572, 666, 1115
CviAII CATG 5 cut(s) 706, 766, 1276, 1311, 1378
CviQI GTAC 3 cut(s) 572, 666, 1115
DdeI CTNAG 5 cut(s) 250, 748, 1050, 1089, 1171
DpnI GATC 9 cut(s) 366, 417, 465, 565, 604, 894, 1251, 1382, 1404
DpnII GATC 9 cut(s) 364, 415, 463, 563, 602, 892, 1249, 1380, 1402
EaeI YGGCCR 1 cut(s) 1283
Eam1104I CTCTTC 2 cut(s) 902, 934
EarI CTCTTC 2 cut(s) 902, 934
Eco130I CCWWGG 1 cut(s) 1310
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 733
EcoO109I RGGNCCY 2 cut(s) 94, 148
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 4 cut(s) 398, 406, 840, 1362
EcoRV GATATC 1 cut(s) 925
EcoT14I CCWWGG 1 cut(s) 1310
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 1310
FaeI CATG 5 cut(s) 709, 769, 1279, 1314, 1381
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 3 cut(s) 161, 1201, 1344
FatI CATG 5 cut(s) 705, 765, 1275, 1310, 1377
FbaI TGATCA 1 cut(s) 1380
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 5 cut(s) 161, 387, 390, 936, 969
FokI GGATG 1 cut(s) 1155
Fsp4HI GCNGC 5 cut(s) 161, 387, 390, 936, 969
FspBI CTAG 2 cut(s) 519, 606
GluI GCNGC 5 cut(s) 161, 387, 390, 936, 969
GsuI CTGGAG 3 cut(s) 258, 588, 852
HaeIII GGCC 2 cut(s) 95, 1285
HapII CCGG 2 cut(s) 908, 917
Hin1II CATG 5 cut(s) 709, 769, 1279, 1314, 1381
HincII GTYRAC 2 cut(s) 688, 1101
HindII GTYRAC 2 cut(s) 688, 1101
HinfI GANTC 3 cut(s) 285, 992, 1121
HpaII CCGG 2 cut(s) 908, 917
HphI GGTGA 2 cut(s) 563, 1157
Hpy166II GTNNAC 6 cut(s) 341, 476, 688, 1039, 1101, 1439
Hpy188I TCNGA 9 cut(s) 253, 415, 529, 563, 591, 814, 883, 1053, 1385
Hpy188III TCNNGA 6 cut(s) 32, 170, 519, 567, 735, 1378
Hpy8I GTNNAC 6 cut(s) 341, 476, 688, 1039, 1101, 1439
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 7 cut(s) 161, 425, 586, 636, 1014, 1133, 1223
HpyCH4III ACNGT 4 cut(s) 372, 458, 670, 1443
HpyCH4IV ACGT 2 cut(s) 307, 1025
HpyCH4V TGCA 9 cut(s) 122, 274, 392, 557, 698, 1208, 1279, 1327, 1439
HpyF10VI GCNNNNNNNGC 3 cut(s) 715, 1214, 1346
HpyF3I CTNAG 5 cut(s) 250, 748, 1050, 1089, 1171
HpySE526I ACGT 2 cut(s) 307, 1025
Hsp92II CATG 5 cut(s) 709, 769, 1279, 1314, 1381
Ksp22I TGATCA 1 cut(s) 1380
Kzo9I GATC 9 cut(s) 364, 415, 463, 563, 602, 892, 1249, 1380, 1402
LmnI GCTCC 2 cut(s) 833, 1345
Lsp1109I GCAGC 4 cut(s) 172, 373, 376, 922
LweI GCATC 5 cut(s) 18, 544, 685, 793, 980
MaeI CTAG 2 cut(s) 519, 606
MaeII ACGT 2 cut(s) 307, 1025
MaeIII GTNAC 2 cut(s) 452, 960
MalI GATC 9 cut(s) 366, 417, 465, 565, 604, 894, 1251, 1382, 1404
MboI GATC 9 cut(s) 364, 415, 463, 563, 602, 892, 1249, 1380, 1402
MboII GAAGA 8 cut(s) 255, 305, 374, 889, 921, 932, 966, 1008
MflI RGATCY 4 cut(s) 563, 602, 892, 1402
MhlI GDGCHC 1 cut(s) 1441
MlsI TGGCCA 1 cut(s) 1285
MluCI AATT 7 cut(s) 35, 583, 784, 1243, 1321, 1331, 1453
MluNI TGGCCA 1 cut(s) 1285
Mox20I TGGCCA 1 cut(s) 1285
Mph1103I ATGCAT 1 cut(s) 559
MscI TGGCCA 1 cut(s) 1285
MseI TTAA 4 cut(s) 470, 783, 797, 1452
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 1285
MspI CCGG 2 cut(s) 908, 917
MspR9I CCNGG 5 cut(s) 400, 408, 842, 908, 1364
Mva1269I GAATGC 1 cut(s) 557
MvaI CCWGG 4 cut(s) 400, 408, 842, 1364
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 715, 1214, 1346
NciI CCSGG 1 cut(s) 908
NcoI CCATGG 1 cut(s) 1310
NdeII GATC 9 cut(s) 364, 415, 463, 563, 602, 892, 1249, 1380, 1402
NlaIII CATG 5 cut(s) 709, 769, 1279, 1314, 1381
NlaIV GGNNCC 3 cut(s) 149, 653, 835
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 1279
PaeI GCATGC 1 cut(s) 1279
PagI TCATGA 1 cut(s) 1377
PctI GAATGC 1 cut(s) 557
PfeI GAWTC 3 cut(s) 285, 992, 1121
PfoI TCCNGGA 1 cut(s) 840
PkrI GCNGC 5 cut(s) 162, 388, 391, 937, 970
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 4 cut(s) 398, 406, 840, 1362
PspGI CCWGG 4 cut(s) 398, 406, 840, 1362
PspN4I GGNNCC 3 cut(s) 149, 653, 835
PspPI GGNCC 2 cut(s) 94, 148
PspPPI RGGWCCY 1 cut(s) 148
PstNI CAGNNNCTG 3 cut(s) 806, 1096, 1190
PsuI RGATCY 4 cut(s) 563, 602, 892, 1402
RsaI GTAC 3 cut(s) 573, 667, 1116
RsaNI GTAC 3 cut(s) 572, 666, 1115
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 4 cut(s) 470, 783, 797, 1452
SatI GCNGC 5 cut(s) 161, 387, 390, 936, 969
Sau3AI GATC 9 cut(s) 364, 415, 463, 563, 602, 892, 1249, 1380, 1402
Sau96I GGNCC 2 cut(s) 94, 148
ScrFI CCNGG 5 cut(s) 400, 408, 842, 908, 1364
SduI GDGCHC 1 cut(s) 1441
SfaNI GCATC 5 cut(s) 18, 544, 685, 793, 980
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SphI GCATGC 1 cut(s) 1279
Sse9I AATT 7 cut(s) 35, 583, 784, 1243, 1321, 1331, 1453
SsiI CCGC 3 cut(s) 716, 792, 969
SspI AATATT 2 cut(s) 1198, 1300
SspMI CTAG 2 cut(s) 519, 606
StyD4I CCNGG 5 cut(s) 398, 406, 840, 906, 1362
StyI CCWWGG 1 cut(s) 1310
TaaI ACNGT 4 cut(s) 372, 458, 670, 1443
TaiI ACGT 2 cut(s) 310, 1028
TaqI TCGA 6 cut(s) 90, 222, 367, 418, 424, 443
TasI AATT 7 cut(s) 35, 583, 784, 1243, 1321, 1331, 1453
TatI WGTACW 3 cut(s) 571, 665, 1114
TauI GCSGC 1 cut(s) 971
TfiI GAWTC 3 cut(s) 285, 992, 1121
Tru1I TTAA 4 cut(s) 470, 783, 797, 1452
Tru9I TTAA 4 cut(s) 470, 783, 797, 1452
TscAI CASTG 3 cut(s) 463, 756, 1286
TseI GCWGC 4 cut(s) 160, 386, 389, 935
TspGWI ACGGA 2 cut(s) 185, 278
TspRI CASTG 3 cut(s) 463, 756, 1286
VneI GTGCAC 1 cut(s) 1437
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 3 cut(s) 35, 1243, 1331
XbaI TCTAGA 1 cut(s) 518
XceI RCATGY 1 cut(s) 1279
XmiI GTMKAC 1 cut(s) 1038
XspI CTAG 2 cut(s) 519, 606
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.