Rorug03G0307100

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007161
Physical Location & Seq
Forward (+)
32614493 .. 32617781
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0307100.1

Sequence Viewer

Length: 2172 bp
ATGAAATTACACCTAGGAATAGAAAGCAGAAGAGCCTCAAGAAGCTTAATCTCTGGTTTGTTGAATGGTTGCATAGTGGCCTACTATGCAGGTTACGACACTCCTTTCCAACGAGAACAACCAAACTCTATTGGAACTTCTAAAGCAAAACACGGAAGTGGGGATAACATCTCTGTTACTAAAGGCGTTGTTTCTAGGGCTGAACCCACACAATATGTTCACGGTGCAACCCAGCTTATGGCAATACAGATCGATGCAGCAATAAATCCCGGGAATAGTGGTAGCCCAGCAATCATGGGAAATAAAGTTGCTGGTGTTGCTTTCCAAAACCTTTCTGGTGCAGAGAATATTGGTTATATAATTCCTGTTCCTGTAATAAAGCATTTTATTGCTGGAGTTGAAGAAAGAGGTAAATATTATGGAGATGGAGATGAAGATGAATATAGAGACCCTTTGGTGAGAGAGGTTTGTGCTGTTTTGAAGTCTCAGGCTGATGAAAGAGTTGCTTTGGAGGTTTTCTACTGGGCTGATAGGCAGTGGAGGTATAAGCATGACCCGGTTGTGTACTATGCAATGCTTGAGGTGCTTAGTAAGACCAAGTTGTGCCAAGGTGCTAGGAGGATTCTTAGGTTAATGGCCCGTAGGCGGATTGAGCTTCGTTCTGAAGCTTTTGGTCATGTGATGGTATCATATAGTCGAGCGGGCAAGTTAAGACATGCGTTGCGCGTGTTGACTTTGATGCAGAAAGCAGGGCTTGAGCTTGATTTGTCAATGTGTAATACTGCAATTTATGTTTTGGTGAAAGGTAATAAGTTAGAGAAGGCGTTGAGGACCTTGGAAAGGATGAAGCTTGTTGGGATTGCACCAAATGTTGTCACTTATAACTGTTTGATAAAGGGGTATTGTGATTTGCATCGTGTAGAAGATGCAATCCAGGTGATTGATGAAATGCCGATGAAGGGGTGTGCTCCTGATAAAGTTAGTTATTATACTGTGATGAATTTCCTTTGTAAGGAGAAGAGGGTCAAAGAAGTGAGGGACTTGATGGAGAAGATGATCAAGGATGGTGGGTTGTTACCAGACCAGGTCACTTATAGTAATCTTGTCCATGTGCTTTGTAAGCACGGCTATGGTGATGAGGCACTTGAATTTTTAAGGGAAGCCGAAGAGAGGGGATTTCGGTTTGATAAGATTGGGTATAGTGCAATTGTACATTCATTTTGTAAGGATGGTAGGATTGACATGGCAAAAGAAATTGTTAGTGAAATGTTCTCAAAAGGTTGCACACCAGATGTTGTTACATACACTGCTGTTCTGAATGGGTATTATCGACTTGGGAAGGTGGATCAAGCTAAAAAGATGCTTCAGCACATGTATAAGCATGGGTGCAAGCCAAATACTGTATCATATACGGCCATAATAAATGGGCTTTGTCATGGTGGGAACTCATTGGAGGCAAGGGAGATGATGAACATGAGTGAGGAAGAATGGTGGACACCAAATGCCATCACTTACAGTGTTCTGATGCATGGGTTCCGGAGGGAAGGAAAATTGGTTGAGGCTTATGACTTGGAAGTTGCTCTGTCATTGCTTGATGACATGTATCTCAGCAACAAACACGCAGATGCAGTAACTTATACAGCAGTGATCAATGCATTGGGAAAGAAGGGTAGAATACAAAAGGCAACAGAACTTATGATGAAGATGCTGGGTAAGGGTATTGACCCGACTCCCGTCACATACAGGACGATCATCCACTGGTATTGTAAGATGAATAGGGTGGATGATTTGTTGAAATTATTGGAGAAGTTGTTCTTGAGGCAACGTTGCAAAACAACATATAATCAAGTGATTGAGAAACTTTGTAGTTTTGGGAACTTTGAGGATGCTGATAAACTATTGGGTAAGGTGTTGAGAACAGCTTCAAGAGTTGATGCTAAAACATGCCATGTTGTTATGGATGGTTATTTGAGAAAAGGGGTTCCTCTGTTAGCATACAAAGTGGTTTGTCGAATGTTCAATCGGAATCTGATTCCAGATTTAAAGTTGTGTCAGAAGGTGACCAAGAGATTGATGCTAGAAGGAAACTCCAAAGAGGCAGACAACCTTATGTTACGGTTTGTTGAGCATGGATGCATATCAAACCAACTTCAGGAACATCTGGAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

723

Amino Acids

81.77

Weight (kDa)

8.99

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin PF00089 55 - 130 7.9e-06 Trypsin
TPR_24 PF23276 199 - 283 2.1e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 224 - 387 2.6e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 243 - 301 4.2e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 258 - 303 2.8e-11 PPR repeat family
PPR_1 PF12854 286 - 317 9.9e-12 PPR repeat
PPR_2 PF13041 289 - 338 3.9e-16 PPR repeat family
PPR PF01535 292 - 322 4.3e-07 PPR repeat
PPR_2 PF13041 324 - 374 8.8e-10 PPR repeat family
PPR_1 PF12854 357 - 387 8.5e-08 PPR repeat
PPR_2 PF13041 360 - 409 2.5e-08 PPR repeat family
PPR PF01535 363 - 393 8.7e-06 PPR repeat
PPR_3 PF13812 385 - 441 3.7e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 392 - 423 6.7e-06 PPR repeat
PPR_long PF17177 396 - 515 9.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 398 - 443 5.8e-12 PPR repeat family
PPR_1 PF12854 426 - 458 1.4e-08 PPR repeat
PPR_3 PF13812 426 - 475 2.5e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 430 - 479 1.2e-17 PPR repeat family
PPR_1 PF12854 461 - 491 4.9e-07 PPR repeat
PPR_3 PF13812 529 - 590 1.1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 542 - 590 4.7e-13 PPR repeat family
PPR PF01535 544 - 574 1.8e-06 PPR repeat
PPR_1 PF12854 572 - 603 1.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
Acc36I ACCTGC 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 701
AccII CGCG 1 cut(s) 726
AccIII TCCGGA 1 cut(s) 1536
AciI CCGC 2 cut(s) 646, 701
AclI AACGTT 1 cut(s) 1825
AclWI GGATC 1 cut(s) 1353
AcoI YGGCCR 1 cut(s) 1413
AcsI RAATTY 2 cut(s) 1000, 1148
AcuI CTGAAG 3 cut(s) 684, 1349, 2135
AfaI GTAC 2 cut(s) 566, 1212
AfiI CCNNNNNNNGG 7 cut(s) 238, 645, 840, 959, 1012, 1170, 2152
AflIII ACRYGT 2 cut(s) 1371, 1599
AgsI TTSAA 7 cut(s) 64, 401, 481, 1148, 1795, 1926, 2020
AjnI CCWGG 2 cut(s) 933, 1083
AleI CACNNNNGTG 1 cut(s) 156
AloI GAACNNNNNNTCC 2 cut(s) 1796, 1828
AluBI AGCT 9 cut(s) 45, 235, 655, 668, 760, 850, 1352, 1922, 2169
AluI AGCT 9 cut(s) 45, 235, 655, 668, 760, 850, 1352, 1922, 2169
Alw21I GWGCWC 1 cut(s) 970
Alw26I GTCTC 2 cut(s) 441, 489
AlwI GGATC 1 cut(s) 1353
Ama87I CYCGRG 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 1536
AoxI GGCC 3 cut(s) 78, 636, 1413
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 1000, 1148
Asp700I GAANNNNTTC 2 cut(s) 1811, 1921
AspA2I CCTAGG 1 cut(s) 13
AspLEI GCGC 1 cut(s) 726
AspS9I GGNCC 2 cut(s) 637, 831
AsuC2I CCSGG 3 cut(s) 270, 271, 557
AsuHPI GGTGA 5 cut(s) 469, 811, 949, 1145, 2071
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 831
AvrII CCTAGG 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 970
BbvI GCAGC 1 cut(s) 269
BccI CCATC 7 cut(s) 419, 676, 1039, 1058, 1223, 1514, 1955
BceAI ACGGC 2 cut(s) 1141, 1428
BciT130I CCWGG 2 cut(s) 935, 1085
BclI TGATCA 2 cut(s) 1056, 1647
BcnI CCSGG 3 cut(s) 270, 271, 557
BcoDI GTCTC 2 cut(s) 441, 489
BfaI CTAG 5 cut(s) 14, 195, 615, 2078, 2170
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 258
BlnI CCTAGG 1 cut(s) 13
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 5 cut(s) 270, 271, 557, 935, 1085
Bme18I GGWCC 1 cut(s) 831
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 637, 831
BmiI GGNNCC 2 cut(s) 1535, 1983
BmrFI CCNGG 5 cut(s) 270, 271, 557, 935, 1085
BmrI ACTGGG 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 532
BoxI GACNNNNGTC 1 cut(s) 1733
BpmI CTGGAG 1 cut(s) 414
BpuEI CTTGAG 4 cut(s) 22, 599, 776, 1837
BpuMI CCSGG 3 cut(s) 270, 271, 557
Bsa29I ATCGAT 1 cut(s) 252
BsaBI GATNNNNATC 2 cut(s) 912, 2137
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 4 cut(s) 13, 269, 607, 834
BsaWI WCCGGW 1 cut(s) 1536
BsaXI ACNNNNNCTCC 2 cut(s) 1796, 1826
Bsc4I CCNNNNNNNGG 7 cut(s) 238, 645, 840, 959, 1012, 1170, 2152
Bse1I ACTGG 2 cut(s) 527, 1763
Bse3DI GCAATG 2 cut(s) 579, 1586
Bse8I GATNNNNATC 2 cut(s) 912, 2137
BseAI TCCGGA 1 cut(s) 1536
BseBI CCWGG 2 cut(s) 935, 1085
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 4 cut(s) 13, 269, 607, 834
BseGI GGATG 8 cut(s) 849, 1069, 1234, 1752, 1789, 1891, 1966, 2138
BseJI GATNNNNATC 2 cut(s) 912, 2137
BseLI CCNNNNNNNGG 7 cut(s) 238, 645, 840, 959, 1012, 1170, 2152
BseMI GCAATG 2 cut(s) 579, 1586
BseMII CTCAG 2 cut(s) 500, 1621
BseNI ACTGG 2 cut(s) 527, 1763
BseXI GCAGC 1 cut(s) 269
BseYI CCCAGC 3 cut(s) 231, 286, 1708
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 3 cut(s) 80, 638, 1415
BshVI ATCGAT 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 970
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 3 cut(s) 270, 557, 1537
BslFI GGGAC 1 cut(s) 1052
BslI CCNNNNNNNGG 7 cut(s) 238, 645, 840, 959, 1012, 1170, 2152
BsmAI GTCTC 2 cut(s) 441, 489
BsmFI GGGAC 1 cut(s) 1052
BsnI GGCC 3 cut(s) 80, 638, 1415
Bso31I GGTCTC 1 cut(s) 441
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 970
Bsp13I TCCGGA 1 cut(s) 1536
Bsp1407I TGTACA 1 cut(s) 1210
Bsp143I GATC 5 cut(s) 249, 1056, 1345, 1647, 1749
BspACI CCGC 2 cut(s) 646, 701
BspANI GGCC 3 cut(s) 80, 638, 1415
BspCNI CTCAG 2 cut(s) 499, 1620
BspDI ATCGAT 1 cut(s) 252
BspEI TCCGGA 1 cut(s) 1536
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 1535, 1983
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 1353
BspQI GCTCTTC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 441
BsrBI CCGCTC 1 cut(s) 701
BsrDI GCAATG 2 cut(s) 579, 1586
BsrGI TGTACA 1 cut(s) 1210
BsrI ACTGG 2 cut(s) 527, 1763
BssECI CCNNGG 4 cut(s) 13, 269, 607, 834
BssMI GATC 5 cut(s) 249, 1056, 1345, 1647, 1749
BssT1I CCWWGG 3 cut(s) 13, 607, 834
Bst2UI CCWGG 2 cut(s) 935, 1085
Bst4CI ACNGT 6 cut(s) 224, 887, 994, 1402, 1517, 2118
Bst6I CTCTTC 3 cut(s) 25, 1013, 1161
BstAUI TGTACA 1 cut(s) 1210
BstC8I GCNNGC 2 cut(s) 703, 1391
BstDEI CTNAG 4 cut(s) 486, 587, 626, 1607
BstEII GGTNACC 1 cut(s) 2059
BstENI CCTNNNNNAGG 2 cut(s) 838, 1010
BstF5I GGATG 8 cut(s) 849, 1069, 1234, 1752, 1789, 1891, 1966, 2138
BstFNI CGCG 1 cut(s) 726
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 5 cut(s) 252, 1059, 1348, 1650, 1752
BstMAI GTCTC 2 cut(s) 441, 489
BstMBI GATC 5 cut(s) 249, 1056, 1345, 1647, 1749
BstMWI GCNNNNNNNGC 5 cut(s) 86, 317, 583, 652, 1120
BstNI CCWGG 2 cut(s) 935, 1085
BstNSI RCATGY 4 cut(s) 719, 1375, 1603, 1947
BstPAI GACNNNNGTC 1 cut(s) 1733
BstPI GGTNACC 1 cut(s) 2059
BstSCI CCNGG 5 cut(s) 268, 269, 555, 933, 1083
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 269
Bsu15I ATCGAT 1 cut(s) 252
BsuRI GGCC 3 cut(s) 80, 638, 1415
BsuTUI ATCGAT 1 cut(s) 252
BtsCI GGATG 8 cut(s) 849, 1069, 1234, 1752, 1789, 1891, 1966, 2138
BtsI GCAGTG 3 cut(s) 542, 1305, 1650
BtsIMutI CAGTG 5 cut(s) 542, 1305, 1522, 1650, 1756
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 703, 1391
CfoI GCGC 1 cut(s) 726
Cfr13I GGNCC 2 cut(s) 637, 831
Cfr9I CCCGGG 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 252
CsiI ACCWGGT 1 cut(s) 1083
Csp6I GTAC 2 cut(s) 565, 1211
CspCI CAANNNNNGTGG 4 cut(s) 1048, 1083, 1745, 1780
CviQI GTAC 2 cut(s) 565, 1211
DdeI CTNAG 4 cut(s) 486, 587, 626, 1607
DpnI GATC 5 cut(s) 251, 1058, 1347, 1649, 1751
DpnII GATC 5 cut(s) 249, 1056, 1345, 1647, 1749
DraI TTTAAA 1 cut(s) 2043
EaeI YGGCCR 1 cut(s) 1413
Eam1104I CTCTTC 3 cut(s) 25, 1013, 1161
EarI CTCTTC 3 cut(s) 25, 1013, 1161
EciI GGCGGA 1 cut(s) 661
Eco130I CCWWGG 3 cut(s) 13, 607, 834
Eco31I GGTCTC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 831
Eco57I CTGAAG 3 cut(s) 684, 1349, 2135
Eco88I CYCGRG 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 2059
EcoNI CCTNNNNNAGG 2 cut(s) 838, 1010
EcoO109I RGGNCCY 1 cut(s) 831
EcoO65I GGTNACC 1 cut(s) 2059
EcoRII CCWGG 2 cut(s) 933, 1083
EcoT14I CCWWGG 3 cut(s) 13, 607, 834
EcoT22I ATGCAT 3 cut(s) 1530, 1657, 2138
ErhI CCWWGG 3 cut(s) 13, 607, 834
FalI AAGNNNNNCTT 6 cut(s) 490, 522, 738, 770, 1799, 1831
FaqI GGGAC 1 cut(s) 1052
FauI CCCGC 1 cut(s) 694
FbaI TGATCA 2 cut(s) 1056, 1647
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 8 cut(s) 856, 1076, 1241, 1739, 1796, 1898, 1973, 2145
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 5 cut(s) 14, 195, 615, 2078, 2170
GlaI GCGC 1 cut(s) 725
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 3 cut(s) 235, 290, 1712
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 3 cut(s) 80, 638, 1415
HapII CCGG 3 cut(s) 270, 557, 1537
HhaI GCGC 1 cut(s) 726
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HincII GTYRAC 1 cut(s) 732
HindII GTYRAC 1 cut(s) 732
HindIII AAGCTT 3 cut(s) 43, 666, 848
HinfI GANTC 4 cut(s) 622, 1729, 2026, 2032
HpaII CCGG 3 cut(s) 270, 557, 1537
HphI GGTGA 5 cut(s) 469, 811, 949, 1145, 2071
Hpy166II GTNNAC 4 cut(s) 220, 565, 732, 1494
Hpy188I TCNGA 6 cut(s) 664, 1317, 1524, 2025, 2031, 2055
Hpy188III TCNNGA 8 cut(s) 39, 971, 1537, 1816, 1926, 2036, 2153, 2162
Hpy8I GTNNAC 4 cut(s) 220, 565, 732, 1494
HpyAV CCTTC 7 cut(s) 814, 952, 1333, 1538, 1660, 2050, 2075
HpyCH4III ACNGT 6 cut(s) 224, 887, 994, 1402, 1517, 2118
HpyCH4IV ACGT 1 cut(s) 1825
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 317, 583, 652, 1120
HpyF3I CTNAG 4 cut(s) 486, 587, 626, 1607
HpySE526I ACGT 1 cut(s) 1825
HspAI GCGC 1 cut(s) 724
Kpn2I TCCGGA 1 cut(s) 1536
Ksp22I TGATCA 2 cut(s) 1056, 1647
Kzo9I GATC 5 cut(s) 249, 1056, 1345, 1647, 1749
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 973
Lsp1109I GCAGC 1 cut(s) 269
MabI ACCWGGT 1 cut(s) 1083
MaeI CTAG 5 cut(s) 14, 195, 615, 2078, 2170
MaeII ACGT 1 cut(s) 1825
MalI GATC 5 cut(s) 251, 1058, 1347, 1649, 1751
MbiI CCGCTC 1 cut(s) 701
MboI GATC 5 cut(s) 249, 1056, 1345, 1647, 1749
MboII GAAGA 9 cut(s) 42, 413, 446, 935, 1030, 1063, 1178, 1496, 1714
MfeI CAATTG 1 cut(s) 1206
MhlI GDGCHC 1 cut(s) 970
MluCI AATT 9 cut(s) 5, 360, 786, 1000, 1148, 1206, 1254, 1550, 1796
MlyI GAGTC 1 cut(s) 1723
MmeI TCCRAC 1 cut(s) 133
Mph1103I ATGCAT 3 cut(s) 1530, 1657, 2138
MroI TCCGGA 1 cut(s) 1536
MroXI GAANNNNTTC 2 cut(s) 1811, 1921
MseI TTAA 5 cut(s) 47, 632, 710, 1154, 2042
MslI CAYNNNNRTG 3 cut(s) 156, 1128, 1623
MspI CCGG 3 cut(s) 270, 557, 1537
MspR9I CCNGG 5 cut(s) 270, 271, 557, 935, 1085
MunI CAATTG 1 cut(s) 1206
MvaI CCWGG 2 cut(s) 935, 1085
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 5 cut(s) 86, 317, 583, 652, 1120
NciI CCSGG 3 cut(s) 270, 271, 557
NdeII GATC 5 cut(s) 249, 1056, 1345, 1647, 1749
NlaIV GGNNCC 2 cut(s) 1535, 1983
NmuCI GTSAC 4 cut(s) 874, 1087, 1735, 2059
NsiI ATGCAT 3 cut(s) 1530, 1657, 2138
NspI RCATGY 4 cut(s) 719, 1375, 1603, 1947
OliI CACNNNNGTG 1 cut(s) 156
PciI ACATGT 2 cut(s) 1371, 1599
PciSI GCTCTTC 1 cut(s) 25
PdmI GAANNNNTTC 2 cut(s) 1811, 1921
PfeI GAWTC 3 cut(s) 622, 2026, 2032
PflFI GACNNNGTC 1 cut(s) 1085
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 1723
PpsI GAGTC 1 cut(s) 1723
PpuMI RGGWCCY 1 cut(s) 831
PscI ACATGT 2 cut(s) 1371, 1599
PshAI GACNNNNGTC 1 cut(s) 1733
PsiI TTATAA 1 cut(s) 882
Psp1406I AACGTT 1 cut(s) 1825
Psp5II RGGWCCY 1 cut(s) 831
Psp6I CCWGG 2 cut(s) 933, 1083
PspEI GGTNACC 1 cut(s) 2059
PspFI CCCAGC 3 cut(s) 231, 286, 1708
PspGI CCWGG 2 cut(s) 933, 1083
PspN4I GGNNCC 2 cut(s) 1535, 1983
PspPI GGNCC 2 cut(s) 637, 831
PspPPI RGGWCCY 1 cut(s) 831
PsyI GACNNNGTC 1 cut(s) 1085
RsaI GTAC 2 cut(s) 566, 1212
RsaNI GTAC 2 cut(s) 565, 1211
RseI CAYNNNNRTG 3 cut(s) 156, 1128, 1623
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 5 cut(s) 47, 632, 710, 1154, 2042
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 5 cut(s) 249, 1056, 1345, 1647, 1749
Sau96I GGNCC 2 cut(s) 637, 831
SchI GAGTC 1 cut(s) 1723
ScrFI CCNGG 5 cut(s) 270, 271, 557, 935, 1085
SduI GDGCHC 1 cut(s) 970
SexAI ACCWGGT 1 cut(s) 1083
SinI GGWCC 1 cut(s) 831
SmaI CCCGGG 1 cut(s) 271
SmiMI CAYNNNNRTG 3 cut(s) 156, 1128, 1623
SmlI CTYRAG 4 cut(s) 37, 578, 755, 1816
SmoI CTYRAG 4 cut(s) 37, 578, 755, 1816
Sse9I AATT 9 cut(s) 5, 360, 786, 1000, 1148, 1206, 1254, 1550, 1796
SsiI CCGC 2 cut(s) 646, 701
SspI AATATT 2 cut(s) 349, 416
SspMI CTAG 5 cut(s) 14, 195, 615, 2078, 2170
StyD4I CCNGG 5 cut(s) 268, 269, 555, 933, 1083
StyI CCWWGG 3 cut(s) 13, 607, 834
TaaI ACNGT 6 cut(s) 224, 887, 994, 1402, 1517, 2118
TaiI ACGT 1 cut(s) 1828
TaqI TCGA 4 cut(s) 252, 697, 1330, 2011
TasI AATT 9 cut(s) 5, 360, 786, 1000, 1148, 1206, 1254, 1550, 1796
TatI WGTACW 2 cut(s) 564, 1210
TfiI GAWTC 3 cut(s) 622, 2026, 2032
Tru1I TTAA 5 cut(s) 47, 632, 710, 1154, 2042
Tru9I TTAA 5 cut(s) 47, 632, 710, 1154, 2042
TscAI CASTG 5 cut(s) 542, 1312, 1522, 1650, 1763
TseFI GTSAC 4 cut(s) 874, 1087, 1735, 2059
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 4 cut(s) 874, 1087, 1735, 2059
TspGWI ACGGA 1 cut(s) 168
TspMI CCCGGG 1 cut(s) 269
TspRI CASTG 5 cut(s) 542, 1312, 1522, 1650, 1763
Tth111I GACNNNGTC 1 cut(s) 1085
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 831
XagI CCTNNNNNAGG 2 cut(s) 838, 1010
XapI RAATTY 2 cut(s) 1000, 1148
XceI RCATGY 4 cut(s) 719, 1375, 1603, 1947
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmaI CCCGGG 1 cut(s) 269
XmaJI CCTAGG 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 1811, 1921
XspI CTAG 5 cut(s) 14, 195, 615, 2078, 2170
Zsp2I ATGCAT 3 cut(s) 1530, 1657, 2138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.