Rorug03G0307200

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007161
Physical Location & Seq
Reverse (-)
32622180 .. 32622823
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0307200.1

Sequence Viewer

Length: 306 bp
ATGCCTTCGGTTACGCGAAACCCCGTTGTTACGCGAAACCCCGTTGTGTTACCTAAGGGTGGTGTTCCGTACATTAGGCAGCAGATCATAGATATTTTCAAAGGTTTTGACAAGAACGGAGACGGCAAGCTCTCCTGGGATGAGGTGCAGGCTGCGTTCGCTAAACTTGGGTCGCATTGTACCTACTATAGAGCTTGGCGAGGACGACGCTGTGCCGATGCCGACAACGATGGCTTCATCTCTCTTGAGAGCGAGCTCGATGAACTTGTCACCTATACCTTGGAACAAAATTATAAACCGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

101

Amino Acids

11.47

Weight (kDa)

7.75

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 29 - 56 5.7e-07 EF hand domain
EF-hand_6 PF13405 29 - 57 1.5e-07 EF-hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AccII CGCG 2 cut(s) 16, 34
AfaI GTAC 2 cut(s) 71, 181
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 3 cut(s) 130, 194, 256
AluI AGCT 3 cut(s) 130, 194, 256
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 79, 152
AsuHPI GGTGA 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 54
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 91, 139
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 2 cut(s) 80, 153
BlsI GCNGC 2 cut(s) 81, 154
Bme1390I CCNGG 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 135, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse21I CCTNAGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 135, 279
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 91, 139
BsgI GTGCAG 1 cut(s) 167
Bsh1236I CGCG 2 cut(s) 16, 34
BsiHKAI GWGCWC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 114
BsmBI CGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 84
BspFNI CGCG 2 cut(s) 16, 34
BssECI CCNNGG 2 cut(s) 135, 279
BssMI GATC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 128, 150, 254
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 2 cut(s) 16, 34
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 187
BstUI CGCG 2 cut(s) 16, 34
BstV1I GCAGC 2 cut(s) 91, 139
Bsu36I CCTNAGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 3 cut(s) 128, 150, 254
CseI GACGC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 70, 180
CviJI RGCY 5 cut(s) 130, 152, 194, 234, 256
CviKI_1 RGCY 5 cut(s) 130, 152, 194, 234, 256
CviQI GTAC 2 cut(s) 70, 180
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
Eco81I CCTNAGG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 114
FaiI YATR 4 cut(s) 89, 189, 276, 294
Fnu4HI GCNGC 2 cut(s) 80, 153
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 80, 153
GluI GCNGC 2 cut(s) 80, 153
HgaI GACGC 1 cut(s) 216
HphI GGTGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 245
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 54
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 3 cut(s) 121, 134, 148
Lsp1109I GCAGC 2 cut(s) 91, 139
LweI GCATC 1 cut(s) 208
MaeIII GTNAC 4 cut(s) 10, 28, 48, 268
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 1 cut(s) 289
MnlI CCTC 2 cut(s) 136, 194
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 2 cut(s) 16, 34
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 268
PkrI GCNGC 2 cut(s) 81, 154
PsiI TTATAA 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
RsaI GTAC 2 cut(s) 71, 181
RsaNI GTAC 2 cut(s) 70, 180
SacI GAGCTC 1 cut(s) 258
SatI GCNGC 2 cut(s) 80, 153
Sau3AI GATC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 258
SetI ASST 9 cut(s) 55, 106, 132, 147, 185, 196, 258, 275, 281
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 289
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 279
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 289
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 79, 152
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 226, 276
TspGWI ACGGA 2 cut(s) 57, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.