EF hand
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g04870 |
| rosa_chinensis | RchiOBHm_Chr4g0395651 RchiOBHm_Chr4g0395681 |
| rosa_roxburghii | Rroxscaffold_5G00340560 |
| rosa_rugosa | Rorug03G0355000 |
| rosa_samantha | Rh4BG061000 Rh4CG067000 Rh4CG067100 Rh4DG056400 |
| rosa_wichuraiana | Rw4G004960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 681 |
| AcsI | RAATTY | 3 cut(s) | 200, 319, 425 |
| AfaI | GTAC | 2 cut(s) | 149, 217 |
| AflII | CTTAAG | 1 cut(s) | 593 |
| AgsI | TTSAA | 4 cut(s) | 205, 325, 332, 394 |
| AhlI | ACTAGT | 1 cut(s) | 512 |
| AluBI | AGCT | 1 cut(s) | 668 |
| AluI | AGCT | 1 cut(s) | 668 |
| AoxI | GGCC | 2 cut(s) | 417, 681 |
| ApoI | RAATTY | 3 cut(s) | 200, 319, 425 |
| AseI | ATTAAT | 2 cut(s) | 474, 600 |
| AspLEI | GCGC | 1 cut(s) | 585 |
| AsuHPI | GGTGA | 3 cut(s) | 328, 464, 503 |
| BalI | TGGCCA | 1 cut(s) | 683 |
| BanII | GRGCYC | 1 cut(s) | 137 |
| BauI | CACGAG | 1 cut(s) | 458 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 36 |
| BcuI | ACTAGT | 1 cut(s) | 512 |
| BfaI | CTAG | 4 cut(s) | 210, 513, 701, 742 |
| BfrI | CTTAAG | 1 cut(s) | 593 |
| BmiI | GGNNCC | 1 cut(s) | 136 |
| BmsI | GCATC | 2 cut(s) | 472, 715 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| Bsa29I | ATCGAT | 1 cut(s) | 470 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 137, 167 |
| Bse118I | RCCGGY | 2 cut(s) | 419, 585 |
| Bse1I | ACTGG | 1 cut(s) | 151 |
| BseCI | ATCGAT | 1 cut(s) | 470 |
| BseMII | CTCAG | 1 cut(s) | 75 |
| BseNI | ACTGG | 1 cut(s) | 151 |
| BseRI | GAGGAG | 3 cut(s) | 281, 284, 287 |
| BshFI | GGCC | 2 cut(s) | 419, 683 |
| BshVI | ATCGAT | 1 cut(s) | 470 |
| BsiSI | CCGG | 2 cut(s) | 420, 586 |
| BslFI | GGGAC | 1 cut(s) | 420 |
| BsmFI | GGGAC | 1 cut(s) | 420 |
| BsnI | GGCC | 2 cut(s) | 419, 683 |
| Bsp1286I | GDGCHC | 1 cut(s) | 137 |
| BspANI | GGCC | 2 cut(s) | 419, 683 |
| BspCNI | CTCAG | 1 cut(s) | 74 |
| BspDI | ATCGAT | 1 cut(s) | 470 |
| BspLI | GGNNCC | 1 cut(s) | 136 |
| BspTI | CTTAAG | 1 cut(s) | 593 |
| BsrFI | RCCGGY | 2 cut(s) | 419, 585 |
| BsrI | ACTGG | 1 cut(s) | 151 |
| BssAI | RCCGGY | 2 cut(s) | 419, 585 |
| BssSI | CACGAG | 1 cut(s) | 458 |
| Bst2BI | CACGAG | 1 cut(s) | 458 |
| Bst4CI | ACNGT | 2 cut(s) | 51, 68 |
| Bst6I | CTCTTC | 1 cut(s) | 440 |
| BstAFI | CTTAAG | 1 cut(s) | 593 |
| BstC8I | GCNNGC | 1 cut(s) | 421 |
| BstDEI | CTNAG | 2 cut(s) | 61, 127 |
| BstHHI | GCGC | 1 cut(s) | 585 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 695 |
| BstNSI | RCATGY | 1 cut(s) | 539 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| Bsu15I | ATCGAT | 1 cut(s) | 470 |
| BsuRI | GGCC | 2 cut(s) | 419, 683 |
| BsuTUI | ATCGAT | 1 cut(s) | 470 |
| BtsIMutI | CAGTG | 2 cut(s) | 73, 158 |
| Cac8I | GCNNGC | 1 cut(s) | 421 |
| CfoI | GCGC | 1 cut(s) | 585 |
| Cfr10I | RCCGGY | 2 cut(s) | 419, 585 |
| ClaI | ATCGAT | 1 cut(s) | 470 |
| Csp6I | GTAC | 2 cut(s) | 148, 216 |
| CviAII | CATG | 4 cut(s) | 142, 440, 529, 536 |
| CviJI | RGCY | 5 cut(s) | 135, 419, 668, 683, 689 |
| CviKI_1 | RGCY | 5 cut(s) | 135, 419, 668, 683, 689 |
| CviQI | GTAC | 2 cut(s) | 148, 216 |
| DdeI | CTNAG | 2 cut(s) | 61, 127 |
| DraI | TTTAAA | 1 cut(s) | 291 |
| EaeI | YGGCCR | 1 cut(s) | 681 |
| Eam1104I | CTCTTC | 1 cut(s) | 440 |
| EarI | CTCTTC | 1 cut(s) | 440 |
| Eco24I | GRGCYC | 1 cut(s) | 137 |
| EcoT38I | GRGCYC | 1 cut(s) | 137 |
| FaeI | CATG | 4 cut(s) | 145, 443, 532, 539 |
| FaqI | GGGAC | 1 cut(s) | 420 |
| FatI | CATG | 4 cut(s) | 141, 439, 528, 535 |
| FriOI | GRGCYC | 1 cut(s) | 137 |
| FspBI | CTAG | 4 cut(s) | 210, 513, 701, 742 |
| GlaI | GCGC | 1 cut(s) | 584 |
| HaeIII | GGCC | 2 cut(s) | 419, 683 |
| HapII | CCGG | 2 cut(s) | 420, 586 |
| HhaI | GCGC | 1 cut(s) | 585 |
| Hin1II | CATG | 4 cut(s) | 145, 443, 532, 539 |
| Hin6I | GCGC | 1 cut(s) | 583 |
| HinP1I | GCGC | 1 cut(s) | 583 |
| HinfI | GANTC | 2 cut(s) | 158, 170 |
| HpaII | CCGG | 2 cut(s) | 420, 586 |
| HphI | GGTGA | 3 cut(s) | 328, 464, 503 |
| Hpy166II | GTNNAC | 1 cut(s) | 455 |
| Hpy188I | TCNGA | 6 cut(s) | 64, 139, 163, 175, 193, 628 |
| Hpy188III | TCNNGA | 1 cut(s) | 315 |
| Hpy8I | GTNNAC | 1 cut(s) | 455 |
| Hpy99I | CGWCG | 2 cut(s) | 80, 83 |
| HpyAV | CCTTC | 4 cut(s) | 88, 132, 388, 409 |
| HpyCH4III | ACNGT | 2 cut(s) | 51, 68 |
| HpyCH4V | TGCA | 5 cut(s) | 44, 431, 535, 698, 709 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 695 |
| HpyF3I | CTNAG | 2 cut(s) | 61, 127 |
| Hsp92II | CATG | 4 cut(s) | 145, 443, 532, 539 |
| HspAI | GCGC | 1 cut(s) | 583 |
| KroI | GCCGGC | 1 cut(s) | 419 |
| KroNI | GCCGGC | 1 cut(s) | 421 |
| LmnI | GCTCC | 1 cut(s) | 140 |
| LpnPI | CCDG | 7 cut(s) | 164, 242, 300, 370, 433, 599, 620 |
| LweI | GCATC | 2 cut(s) | 472, 715 |
| MaeI | CTAG | 4 cut(s) | 210, 513, 701, 742 |
| MaeIII | GTNAC | 3 cut(s) | 56, 342, 588 |
| MboII | GAAGA | 7 cut(s) | 110, 234, 244, 457, 617, 620, 623 |
| MhlI | GDGCHC | 1 cut(s) | 137 |
| MlsI | TGGCCA | 1 cut(s) | 683 |
| MluCI | AATT | 7 cut(s) | 115, 200, 279, 300, 319, 425, 629 |
| MluNI | TGGCCA | 1 cut(s) | 683 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 9 cut(s) | 19, 40, 259, 262, 265, 268, 443, 517, 639 |
| Mox20I | TGGCCA | 1 cut(s) | 683 |
| MroNI | GCCGGC | 1 cut(s) | 419 |
| MscI | TGGCCA | 1 cut(s) | 683 |
| MseI | TTAA | 6 cut(s) | 290, 299, 474, 558, 594, 600 |
| MslI | CAYNNNNRTG | 1 cut(s) | 540 |
| Msp20I | TGGCCA | 1 cut(s) | 683 |
| MspCI | CTTAAG | 1 cut(s) | 593 |
| MspI | CCGG | 2 cut(s) | 420, 586 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 695 |
| NaeI | GCCGGC | 1 cut(s) | 421 |
| NgoMIV | GCCGGC | 1 cut(s) | 419 |
| NlaIII | CATG | 4 cut(s) | 145, 443, 532, 539 |
| NlaIV | GGNNCC | 1 cut(s) | 136 |
| NmeAIII | GCCGAG | 1 cut(s) | 715 |
| NmuCI | GTSAC | 3 cut(s) | 56, 342, 588 |
| NspI | RCATGY | 1 cut(s) | 539 |
| PdiI | GCCGGC | 1 cut(s) | 421 |
| PfeI | GAWTC | 2 cut(s) | 158, 170 |
| PshBI | ATTAAT | 2 cut(s) | 474, 600 |
| PspN4I | GGNNCC | 1 cut(s) | 136 |
| RsaI | GTAC | 2 cut(s) | 149, 217 |
| RsaNI | GTAC | 2 cut(s) | 148, 216 |
| RseI | CAYNNNNRTG | 1 cut(s) | 540 |
| SaqAI | TTAA | 6 cut(s) | 290, 299, 474, 558, 594, 600 |
| SduI | GDGCHC | 1 cut(s) | 137 |
| SetI | ASST | 4 cut(s) | 11, 298, 454, 670 |
| SfaNI | GCATC | 2 cut(s) | 472, 715 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 540 |
| SmlI | CTYRAG | 1 cut(s) | 593 |
| SmoI | CTYRAG | 1 cut(s) | 593 |
| SpeI | ACTAGT | 1 cut(s) | 512 |
| Sse9I | AATT | 7 cut(s) | 115, 200, 279, 300, 319, 425, 629 |
| SspI | AATATT | 2 cut(s) | 328, 575 |
| SspMI | CTAG | 4 cut(s) | 210, 513, 701, 742 |
| TaaI | ACNGT | 2 cut(s) | 51, 68 |
| TaqI | TCGA | 4 cut(s) | 470, 503, 670, 723 |
| TasI | AATT | 7 cut(s) | 115, 200, 279, 300, 319, 425, 629 |
| TfiI | GAWTC | 2 cut(s) | 158, 170 |
| Tru1I | TTAA | 6 cut(s) | 290, 299, 474, 558, 594, 600 |
| Tru9I | TTAA | 6 cut(s) | 290, 299, 474, 558, 594, 600 |
| TscAI | CASTG | 2 cut(s) | 73, 158 |
| TseFI | GTSAC | 3 cut(s) | 56, 342, 588 |
| Tsp45I | GTSAC | 3 cut(s) | 56, 342, 588 |
| TspDTI | ATGAA | 3 cut(s) | 251, 585, 618 |
| TspGWI | ACGGA | 2 cut(s) | 235, 536 |
| TspRI | CASTG | 2 cut(s) | 73, 158 |
| Vha464I | CTTAAG | 1 cut(s) | 593 |
| VspI | ATTAAT | 2 cut(s) | 474, 600 |
| XapI | RAATTY | 3 cut(s) | 200, 319, 425 |
| XceI | RCATGY | 1 cut(s) | 539 |
| XspI | CTAG | 4 cut(s) | 210, 513, 701, 742 |