Rh4CG067000

EF hand

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018414
Physical Location & Seq
Forward (+)
12601295 .. 12601917
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG067000.1

Sequence Viewer

Length: 348 bp
ATGGCTTGTTTTACTACTACCTTTTCGTATCTGAGTGTTGCATGCGATGGCCTTGGCTGCAATGCCTTGATCCAGGGACGTTATTTTACTTGCCTGGACTGCTCCATTATCGGCGGACCTAACAGTTTCGATCTCTGCTCCTCCTGCTATCCGAATCGAAACTACTCCCACCTCCACACCACTTTTGTGGAAAAGCACGTCTCTGCGTTTCCAGCTGCAAATTACCTACCAACATCGTATACAGCTGCGAGCCAACCGGCGACACTGAATTACAGTAATGAGGCAGCAATGAAGGGAATAAAAGCAGTCAATACCGGTTGTATTGCACATTATTGCCACATTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

115

Amino Acids

12.42

Weight (kDa)

6.91

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04870
rosa_chinensis RchiOBHm_Chr4g0395651 RchiOBHm_Chr4g0395681
rosa_roxburghii Rroxscaffold_5G00340560
rosa_rugosa Rorug03G0355000
rosa_samantha Rh4BG061000 Rh4CG067000 Rh4CG067100 Rh4DG056400
rosa_wichuraiana Rw4G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 239
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 64
AgeI ACCGGT 1 cut(s) 314
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 2 cut(s) 72, 93
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 2 cut(s) 215, 245
AluI AGCT 2 cut(s) 215, 245
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 4 cut(s) 57, 215, 245, 284
AsiGI ACCGGT 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BbvI GCAGC 4 cut(s) 44, 202, 232, 296
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 74, 95
BcoDI GTCTC 1 cut(s) 205
BisI GCNGC 4 cut(s) 58, 216, 246, 285
BlsI GCNGC 4 cut(s) 59, 217, 247, 286
Bme1390I CCNGG 2 cut(s) 74, 95
Bme18I GGWCC 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 116
BmrFI CCNGG 2 cut(s) 74, 95
BsaJI CCNNGG 2 cut(s) 52, 73
BsaWI WCCGGW 1 cut(s) 314
Bse118I RCCGGY 2 cut(s) 256, 314
Bse3DI GCAATG 2 cut(s) 67, 294
BseBI CCWGG 2 cut(s) 74, 95
BseDI CCNNGG 2 cut(s) 52, 73
BseMI GCAATG 2 cut(s) 67, 294
BseMII CTCAG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 4 cut(s) 44, 202, 232, 296
BshFI GGCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 314
BsiSI CCGG 2 cut(s) 257, 315
BslFI GGGAC 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 205
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 69, 130
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 67, 294
BsrFI RCCGGY 2 cut(s) 256, 314
BssAI RCCGGY 2 cut(s) 256, 314
BssECI CCNNGG 2 cut(s) 52, 73
BssMI GATC 2 cut(s) 69, 130
BssNAI GTATAC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 52
Bst1107I GTATAC 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 74, 95
Bst4CI ACNGT 2 cut(s) 125, 275
BstC8I GCNNGC 2 cut(s) 43, 250
BstDEI CTNAG 1 cut(s) 32
BstKTI GATC 2 cut(s) 72, 133
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 2 cut(s) 69, 130
BstMWI GCNNNNNNNGC 4 cut(s) 57, 99, 144, 212
BstNI CCWGG 2 cut(s) 74, 95
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 72, 93
BstV1I GCAGC 4 cut(s) 44, 202, 232, 296
BstXI CCANNNNNNTGG 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 43, 250
Cfr10I RCCGGY 2 cut(s) 256, 314
Cfr13I GGNCC 1 cut(s) 116
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 1 cut(s) 42
CviJI RGCY 6 cut(s) 5, 51, 57, 215, 245, 252
CviKI_1 RGCY 6 cut(s) 5, 51, 57, 215, 245, 252
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 71, 132
DpnII GATC 2 cut(s) 69, 130
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 72, 93
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 1 cut(s) 45
FaiI YATR 3 cut(s) 43, 240, 346
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 41
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 4 cut(s) 58, 216, 246, 285
Fsp4HI GCNGC 4 cut(s) 58, 216, 246, 285
GluI GCNGC 4 cut(s) 58, 216, 246, 285
HaeIII GGCC 1 cut(s) 51
HapII CCGG 2 cut(s) 257, 315
Hin1II CATG 1 cut(s) 45
HinfI GANTC 1 cut(s) 154
HpaII CCGG 2 cut(s) 257, 315
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 33, 153
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 125, 275
HpyCH4IV ACGT 2 cut(s) 79, 198
HpyCH4V TGCA 4 cut(s) 41, 60, 218, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 99, 144, 212
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 2 cut(s) 79, 198
Hsp92II CATG 1 cut(s) 45
Kzo9I GATC 2 cut(s) 69, 130
LmnI GCTCC 2 cut(s) 107, 143
LpnPI CCDG 8 cut(s) 59, 80, 86, 107, 157, 225, 270, 328
Lsp1109I GCAGC 4 cut(s) 44, 202, 232, 296
MaeII ACGT 2 cut(s) 79, 198
MalI GATC 2 cut(s) 71, 132
MboI GATC 2 cut(s) 69, 130
MluCI AATT 2 cut(s) 220, 268
MnlI CCTC 3 cut(s) 151, 182, 274
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 2 cut(s) 215, 245
MspI CCGG 2 cut(s) 257, 315
MspR9I CCNGG 2 cut(s) 74, 95
MvaI CCWGG 2 cut(s) 74, 95
MwoI GCNNNNNNNGC 4 cut(s) 57, 99, 144, 212
NdeII GATC 2 cut(s) 69, 130
NlaIII CATG 1 cut(s) 45
NspI RCATGY 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 185
PaeI GCATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 4 cut(s) 59, 217, 247, 286
Psp6I CCWGG 2 cut(s) 72, 93
PspGI CCWGG 2 cut(s) 72, 93
PspPI GGNCC 1 cut(s) 116
PvuII CAGCTG 2 cut(s) 215, 245
RseI CAYNNNNRTG 1 cut(s) 185
SatI GCNGC 4 cut(s) 58, 216, 246, 285
Sau3AI GATC 2 cut(s) 69, 130
Sau96I GGNCC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 74, 95
SetI ASST 8 cut(s) 23, 82, 121, 174, 201, 217, 228, 247
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 185
SphI GCATGC 1 cut(s) 45
Sse9I AATT 2 cut(s) 220, 268
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 72, 93
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 125, 275
TaiI ACGT 2 cut(s) 82, 201
TaqI TCGA 2 cut(s) 129, 157
TasI AATT 2 cut(s) 220, 268
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 1 cut(s) 270
TseI GCWGC 4 cut(s) 57, 215, 245, 284
TspDTI ATGAA 1 cut(s) 305
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 116
XceI RCATGY 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.