protein ubiquitination
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr7g0242411 RchiOBHm_Chr7g0242471 |
| rosa_multiflora | Rmu_sc0000429.1_g000058 Rmu_sc0000429.1_g000066 |
| rosa_rugosa | Rorug04G0006800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 9 |
| AciI | CCGC | 2 cut(s) | 7, 63 |
| AcoI | YGGCCR | 1 cut(s) | 80 |
| AgsI | TTSAA | 1 cut(s) | 186 |
| AluBI | AGCT | 3 cut(s) | 19, 28, 69 |
| AluI | AGCT | 3 cut(s) | 19, 28, 69 |
| Alw21I | GWGCWC | 1 cut(s) | 30 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| AoxI | GGCC | 3 cut(s) | 42, 80, 95 |
| ApeKI | GCWGC | 3 cut(s) | 13, 16, 155 |
| AspS9I | GGNCC | 2 cut(s) | 4, 95 |
| AsuC2I | CCSGG | 1 cut(s) | 99 |
| AsuHPI | GGTGA | 1 cut(s) | 13 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 30 |
| BauI | CACGAG | 1 cut(s) | 142 |
| Bbv12I | GWGCWC | 1 cut(s) | 30 |
| BbvI | GCAGC | 3 cut(s) | 25, 28, 142 |
| BcnI | CCSGG | 1 cut(s) | 99 |
| BfmI | CTRYAG | 1 cut(s) | 156 |
| BisI | GCNGC | 3 cut(s) | 14, 17, 156 |
| BlsI | GCNGC | 3 cut(s) | 15, 18, 157 |
| Bme1390I | CCNGG | 1 cut(s) | 99 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 95 |
| BmrFI | CCNGG | 1 cut(s) | 99 |
| BpuMI | CCSGG | 1 cut(s) | 99 |
| BseGI | GGATG | 1 cut(s) | 48 |
| BseMII | CTCAG | 1 cut(s) | 138 |
| BseXI | GCAGC | 3 cut(s) | 25, 28, 142 |
| Bsh1236I | CGCG | 1 cut(s) | 9 |
| BshFI | GGCC | 3 cut(s) | 44, 82, 97 |
| BsiHKAI | GWGCWC | 1 cut(s) | 30 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BsiSI | CCGG | 1 cut(s) | 98 |
| BsnI | GGCC | 3 cut(s) | 44, 82, 97 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 1 cut(s) | 30 |
| BspACI | CCGC | 2 cut(s) | 7, 63 |
| BspANI | GGCC | 3 cut(s) | 44, 82, 97 |
| BspCNI | CTCAG | 1 cut(s) | 137 |
| BspFNI | CGCG | 1 cut(s) | 9 |
| BspMAI | CTGCAG | 1 cut(s) | 160 |
| BssSI | CACGAG | 1 cut(s) | 142 |
| Bst2BI | CACGAG | 1 cut(s) | 142 |
| BstC8I | GCNNGC | 4 cut(s) | 11, 42, 67, 153 |
| BstDEI | CTNAG | 1 cut(s) | 124 |
| BstF5I | GGATG | 1 cut(s) | 48 |
| BstFNI | CGCG | 1 cut(s) | 9 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 25 |
| BstNSI | RCATGY | 1 cut(s) | 155 |
| BstSCI | CCNGG | 1 cut(s) | 97 |
| BstSFI | CTRYAG | 1 cut(s) | 156 |
| BstUI | CGCG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 3 cut(s) | 25, 28, 142 |
| BsuRI | GGCC | 3 cut(s) | 44, 82, 97 |
| BtsCI | GGATG | 1 cut(s) | 48 |
| Cac8I | GCNNGC | 4 cut(s) | 11, 42, 67, 153 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 95 |
| CviAII | CATG | 1 cut(s) | 152 |
| CviJI | RGCY | 8 cut(s) | 19, 28, 44, 69, 82, 97, 123, 169 |
| CviKI_1 | RGCY | 8 cut(s) | 19, 28, 44, 69, 82, 97, 123, 169 |
| DdeI | CTNAG | 1 cut(s) | 124 |
| EaeI | YGGCCR | 1 cut(s) | 80 |
| EciI | GGCGGA | 1 cut(s) | 52 |
| Ecl136II | GAGCTC | 1 cut(s) | 28 |
| Eco24I | GRGCYC | 1 cut(s) | 30 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco53kI | GAGCTC | 1 cut(s) | 28 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| EcoICRI | GAGCTC | 1 cut(s) | 28 |
| EcoT38I | GRGCYC | 1 cut(s) | 30 |
| FaeI | CATG | 1 cut(s) | 155 |
| FaiI | YATR | 1 cut(s) | 153 |
| FatI | CATG | 1 cut(s) | 151 |
| Fnu4HI | GCNGC | 3 cut(s) | 14, 17, 156 |
| FokI | GGATG | 1 cut(s) | 35 |
| FriOI | GRGCYC | 1 cut(s) | 30 |
| Fsp4HI | GCNGC | 3 cut(s) | 14, 17, 156 |
| GluI | GCNGC | 3 cut(s) | 14, 17, 156 |
| HaeIII | GGCC | 3 cut(s) | 44, 82, 97 |
| HapII | CCGG | 1 cut(s) | 98 |
| Hin1II | CATG | 1 cut(s) | 155 |
| HpaII | CCGG | 1 cut(s) | 98 |
| HphI | GGTGA | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 1 cut(s) | 114 |
| HpyAV | CCTTC | 1 cut(s) | 86 |
| HpyCH4V | TGCA | 1 cut(s) | 158 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 25 |
| HpyF3I | CTNAG | 1 cut(s) | 124 |
| Hsp92II | CATG | 1 cut(s) | 155 |
| LpnPI | CCDG | 4 cut(s) | 26, 50, 79, 111 |
| Lsp1109I | GCAGC | 3 cut(s) | 25, 28, 142 |
| MboII | GAAGA | 2 cut(s) | 127, 173 |
| MhlI | GDGCHC | 1 cut(s) | 30 |
| MnlI | CCTC | 2 cut(s) | 62, 70 |
| MspI | CCGG | 1 cut(s) | 98 |
| MspR9I | CCNGG | 1 cut(s) | 99 |
| MvnI | CGCG | 1 cut(s) | 9 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 25 |
| NciI | CCSGG | 1 cut(s) | 99 |
| NlaIII | CATG | 1 cut(s) | 155 |
| NspI | RCATGY | 1 cut(s) | 155 |
| PaeI | GCATGC | 1 cut(s) | 155 |
| PaeR7I | CTCGAG | 1 cut(s) | 29 |
| PkrI | GCNGC | 3 cut(s) | 15, 18, 157 |
| Psp124BI | GAGCTC | 1 cut(s) | 30 |
| PspPI | GGNCC | 2 cut(s) | 4, 95 |
| PspXI | VCTCGAGB | 1 cut(s) | 29 |
| PstI | CTGCAG | 1 cut(s) | 160 |
| SacI | GAGCTC | 1 cut(s) | 30 |
| SatI | GCNGC | 3 cut(s) | 14, 17, 156 |
| Sau96I | GGNCC | 2 cut(s) | 4, 95 |
| ScrFI | CCNGG | 1 cut(s) | 99 |
| SduI | GDGCHC | 1 cut(s) | 30 |
| SetI | ASST | 5 cut(s) | 21, 30, 62, 71, 134 |
| SfcI | CTRYAG | 1 cut(s) | 156 |
| Sfr274I | CTCGAG | 1 cut(s) | 29 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SlaI | CTCGAG | 1 cut(s) | 29 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| SphI | GCATGC | 1 cut(s) | 155 |
| SsiI | CCGC | 2 cut(s) | 7, 63 |
| SstI | GAGCTC | 1 cut(s) | 30 |
| StyD4I | CCNGG | 1 cut(s) | 97 |
| TaqI | TCGA | 4 cut(s) | 30, 54, 104, 191 |
| TseI | GCWGC | 3 cut(s) | 13, 16, 155 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XceI | RCATGY | 1 cut(s) | 155 |
| XhoI | CTCGAG | 1 cut(s) | 29 |