Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0017141

Physical Location & Seq

Genomic Coordinates Reverse (-)

22242412 .. 22243997

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0137100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGAAAGAAGAAATCCACCAATACCGAAACTGAGGGATCTGGAAAACAAAAGGCCACATGGCCTGATGAGGTAGTAGCTATATTTTGTGATATAGCTGCTAAGGAAGTGGCCAAAGGAAACAGGCCCGGTACACATTTTGATAAAAAGGGATGGACAAATGTTGTGTTAGCCTTTAAGGAGTTAACCGGAAGGGATTATGATAAAAAGCAATTGAAAAATAAATGGGATTCGCTTAAAAATGATTGGAAATTGTGGAGTTCGCTGTTGCATAAGGAAACTAGTATTGGATGGGATCCGGCTAGGAAGACTGTCGATGCACAGACTGAATGGTGGGAAACGAAAATTCAGATCAATCCAGAGTATCGCAAATTTCGCGACGTGGGAATTAGTCCTGACATGATGGCTGTCTATGATAACATATTCAAGGGTAGCACAGCCCTACGTCACAATGTCATGATTCCCTCAGAAACTATAGATATTGAAGAGGTTGTGGAGGATTCTGAGCATAATATTATTTCTGGAGATGATGAAGAGGATTATGAGCAAGGTAATGAATGTAGAGGGAAAAAGAGAACAAATGTGGAGCACCAAACAGAGGCTGATAAAGAGAAAAAAGGAAAAGGAGTTATGGGAGGGCCAAAGGGGAAGAAAGAAAAGGTGGGAGGTGCGGCCAAATTGTCTAAACAAATCGATCGGCTTGTTGATGTAGTCGAGAGTAGGAGTACATCCACCTATGTTCATGATAATGGTACCTTACATGGAACTAGTATTCAGGAGGTGATGAAAGTTGTTGCAACATTACCAGGAGCAGAAACGGGTACCAAGTTATGGTGGTTTGCAACGGAGCTGTTATGCTCTCAAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

290

Amino Acids

32.69

Weight (kDa)

6.42

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	21 - 113	3.3e-22	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14820
fragaria_vesca	FvH4_4g16280
malus_domestica	MD16G1195600.v1.1
prunus_persica	Prupe.1G015600_v2.0.a1
pyrus_communis	pycom16g16480
rosa_chinensis	RchiOBHm_Chr4g0415871
rosa_laevigata	RLG00000008032
rosa_multiflora	Rmu_co8517385.1_g000001 Rmu_sc0002438.1_g000005
rosa_rugosa	Rorug04G0137100
rosa_samantha	Rh4BG196800 Rh4CG209900
rosa_wichuraiana	Rw4G016860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	752, 821
AccB1I	GGYRCC	2 cut(s)	752, 821
AccB7I	CCANNNNNTGG	1 cut(s)	831
AccII	CGCG	1 cut(s)	378
AciI	CCGC	1 cut(s)	671
AclWI	GGATC	3 cut(s)	46, 290, 303
AcoI	YGGCCR	2 cut(s)	111, 672
AcsI	RAATTY	2 cut(s)	345, 371
AfaI	GTAC	4 cut(s)	133, 727, 754, 823
AfiI	CCNNNNNNNGG	2 cut(s)	598, 831
AgsI	TTSAA	3 cut(s)	217, 427, 485
AhlI	ACTAGT	2 cut(s)	281, 767
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	3 cut(s)	80, 98, 850
AluI	AGCT	3 cut(s)	80, 98, 850
Alw21I	GWGCWC	1 cut(s)	591
AlwI	GGATC	3 cut(s)	46, 290, 303
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	6 cut(s)	54, 62, 111, 125, 638, 672
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	345, 371
Asp718I	GGTACC	2 cut(s)	752, 821
AspS9I	GGNCC	2 cut(s)	126, 638
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	793
BalI	TGGCCA	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	2 cut(s)	752, 821
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	147, 285, 397
BciT130I	CCWGG	1 cut(s)	807
BcnI	CCSGG	1 cut(s)	129
BcuI	ACTAGT	2 cut(s)	281, 767
BfaI	CTAG	3 cut(s)	282, 303, 768
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	2 cut(s)	99, 672
BlsI	GCNGC	2 cut(s)	100, 673
Bme1390I	CCNGG	2 cut(s)	129, 807
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	126, 638
BmiI	GGNNCC	3 cut(s)	297, 754, 823
BmrFI	CCNGG	2 cut(s)	129, 807
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	846
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	693
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 831
BseBI	CCWGG	1 cut(s)	807
BseCI	ATCGAT	1 cut(s)	693
BseGI	GGATG	3 cut(s)	158, 296, 728
BseLI	CCNNNNNNNGG	2 cut(s)	598, 831
BseMII	CTCAG	3 cut(s)	24, 480, 495
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	6 cut(s)	56, 64, 113, 127, 640, 674
BshNI	GGYRCC	2 cut(s)	752, 821
BshVI	ATCGAT	1 cut(s)	693
BsiEI	CGRYCG	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	3 cut(s)	129, 189, 299
BslI	CCNNNNNNNGG	2 cut(s)	598, 831
BsnI	GGCC	6 cut(s)	56, 64, 113, 127, 640, 674
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	4 cut(s)	38, 295, 351, 694
Bsp68I	TCGCGA	1 cut(s)	378
BspACI	CCGC	1 cut(s)	671
BspANI	GGCC	6 cut(s)	56, 64, 113, 127, 640, 674
BspCNI	CTCAG	3 cut(s)	25, 479, 496
BspDI	ATCGAT	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	2 cut(s)	456, 742
BspLI	GGNNCC	3 cut(s)	297, 754, 823
BspPI	GGATC	3 cut(s)	46, 290, 303
BspT107I	GGYRCC	2 cut(s)	752, 821
BssMI	GATC	4 cut(s)	38, 295, 351, 694
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	2 cut(s)	480, 528
BstDEI	CTNAG	4 cut(s)	33, 102, 466, 504
BstF5I	GGATG	3 cut(s)	158, 296, 728
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	4 cut(s)	41, 298, 354, 697
BstMBI	GATC	4 cut(s)	38, 295, 351, 694
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	807
BstSCI	CCNGG	2 cut(s)	127, 805
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	38, 295
BstYI	RGATCY	2 cut(s)	38, 295
Bsu15I	ATCGAT	1 cut(s)	693
BsuRI	GGCC	6 cut(s)	56, 64, 113, 127, 640, 674
BsuTUI	ATCGAT	1 cut(s)	693
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	3 cut(s)	158, 296, 728
BtuMI	TCGCGA	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	2 cut(s)	456, 742
Cfr13I	GGNCC	2 cut(s)	126, 638
ClaI	ATCGAT	1 cut(s)	693
Csp6I	GTAC	4 cut(s)	132, 726, 753, 822
CviAII	CATG	5 cut(s)	60, 400, 457, 743, 761
CviQI	GTAC	4 cut(s)	132, 726, 753, 822
DdeI	CTNAG	4 cut(s)	33, 102, 466, 504
DpnI	GATC	4 cut(s)	40, 297, 353, 696
DpnII	GATC	4 cut(s)	38, 295, 351, 694
EaeI	YGGCCR	2 cut(s)	111, 672
Eam1104I	CTCTTC	2 cut(s)	480, 528
EarI	CTCTTC	2 cut(s)	480, 528
EcoRII	CCWGG	1 cut(s)	805
FaeI	CATG	5 cut(s)	63, 403, 460, 746, 764
FatI	CATG	5 cut(s)	59, 399, 456, 742, 760
Fnu4HI	GCNGC	2 cut(s)	99, 672
FokI	GGATG	3 cut(s)	165, 303, 715
Fsp4HI	GCNGC	2 cut(s)	99, 672
FspBI	CTAG	3 cut(s)	282, 303, 768
GluI	GCNGC	2 cut(s)	99, 672
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	6 cut(s)	56, 64, 113, 127, 640, 674
HapII	CCGG	3 cut(s)	129, 189, 299
Hin1II	CATG	5 cut(s)	63, 403, 460, 746, 764
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	3 cut(s)	230, 460, 500
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	3 cut(s)	129, 189, 299
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	2 cut(s)	134, 186
Hpy188I	TCNGA	3 cut(s)	351, 469, 505
Hpy8I	GTNNAC	2 cut(s)	134, 186
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	2 cut(s)	381, 445
HpyCH4V	TGCA	4 cut(s)	271, 320, 797, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	4 cut(s)	33, 102, 466, 504
HpySE526I	ACGT	2 cut(s)	381, 445
Hsp92II	CATG	5 cut(s)	63, 403, 460, 746, 764
KpnI	GGTACC	2 cut(s)	756, 825
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	38, 295, 351, 694
LmnI	GCTCC	3 cut(s)	586, 809, 847
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	3 cut(s)	282, 303, 768
MaeII	ACGT	2 cut(s)	381, 445
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	4 cut(s)	40, 297, 353, 696
MboI	GATC	4 cut(s)	38, 295, 351, 694
MboII	GAAGA	5 cut(s)	22, 319, 497, 545, 661
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	2 cut(s)	38, 295
MhlI	GDGCHC	1 cut(s)	591
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	6 cut(s)	212, 251, 345, 371, 387, 677
MluNI	TGGCCA	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	3 cut(s)	177, 185, 237
MslI	CAYNNNNRTG	1 cut(s)	747
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	3 cut(s)	129, 189, 299
MspR9I	CCNGG	2 cut(s)	129, 807
MunI	CAATTG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	807
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	375
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	38, 295, 351, 694
NlaIII	CATG	5 cut(s)	63, 403, 460, 746, 764
NlaIV	GGNNCC	3 cut(s)	297, 754, 823
NmuCI	GTSAC	1 cut(s)	446
NruI	TCGCGA	1 cut(s)	378
PagI	TCATGA	2 cut(s)	456, 742
PfeI	GAWTC	3 cut(s)	230, 460, 500
PflMI	CCANNNNNTGG	1 cut(s)	831
PkrI	GCNGC	2 cut(s)	100, 673
Ple19I	CGATCG	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	3 cut(s)	297, 754, 823
PspPI	GGNCC	2 cut(s)	126, 638
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	2 cut(s)	38, 295
PvuI	CGATCG	1 cut(s)	697
RruI	TCGCGA	1 cut(s)	378
RsaI	GTAC	4 cut(s)	133, 727, 754, 823
RsaNI	GTAC	4 cut(s)	132, 726, 753, 822
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	3 cut(s)	177, 185, 237
SatI	GCNGC	2 cut(s)	99, 672
Sau3AI	GATC	4 cut(s)	38, 295, 351, 694
Sau96I	GGNCC	2 cut(s)	126, 638
ScrFI	CCNGG	2 cut(s)	129, 807
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	861
SmoI	CTYRAG	1 cut(s)	861
SpeI	ACTAGT	2 cut(s)	281, 767
Sse9I	AATT	6 cut(s)	212, 251, 345, 371, 387, 677
SsiI	CCGC	1 cut(s)	671
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	3 cut(s)	282, 303, 768
StyD4I	CCNGG	2 cut(s)	127, 805
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	2 cut(s)	384, 448
TaqI	TCGA	3 cut(s)	315, 693, 714
TasI	AATT	6 cut(s)	212, 251, 345, 371, 387, 677
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	3 cut(s)	230, 460, 500
Tru1I	TTAA	3 cut(s)	177, 185, 237
Tru9I	TTAA	3 cut(s)	177, 185, 237
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	546, 570, 731, 800
TspGWI	ACGGA	1 cut(s)	860
Van91I	CCANNNNNTGG	1 cut(s)	831
XapI	RAATTY	2 cut(s)	345, 371
XspI	CTAG	3 cut(s)	282, 303, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.