Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017141

Physical Location & Seq

Genomic Coordinates Reverse (-)

43930023 .. 43932544

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG209900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGTCAACCCTACCCTGCACCACCTTATCCCTCCCTCGCCACCCAAACCCAAAACCAAGCCCAACAATCCTCTTCACCACACCCACAACCCTCTTCACATCCCTCTCCTCCTCCACCAACCTCAAGCACCTCAAACAAGTCCACGCCCAAATCCTCAAATCCAACCTCGACCGCTCCGACTCTCTTCTCTTCAAACTCCTCCTCTCCTCCTTCACTCTCTCCCCGACCCTCCACTACCCCCTCTCCCTCTTCACCCAAATCTCGAAACCCCAAACCCATCTCTGCAACAAGCTCCTGCGTGAGCTTTCGCGGTGCCGTGAACCCGAAAAGGCCCTCTTGGTTTATGAGAGGATGAGGAGGGAGGGCGTGGCTCTCGACAGGTTCAGCTTCCCGCCGCTGTTGAAGGCCGTGTCGAGAACTTCGGCTCTGGCTGAGGGGATAGAGATTCATGGGCTTGTGTGCAAGTTGGGCTTTGATTCGGACCCGTTTGTGCAGACGGTTTTGGTTAGAATGTACGCTGCCTGTGGGAGGGTTATGGATGCACGCCTGGTGTTTGATAAAATGCCTAGCCGGGATGTTGTTGCCTGGAGTATTATGATTGATGGGTACTGTCAGAGTGGCCATTATGACATTGCATTCAACCTCTTTGAAGAGATGAAGAATTCGGATGTGAAGCCAGATGAGATGATTCTTTCCACCATTCTTTCTGCCTGCGGCCGTGCTGGGAATTTAACTTATGGGAAAGCAGTCCATGACTTCATTGAGGAGAATGAAATTGTGGTCGACTCTCATATACTGAGTGCTCTTATCGCACTGTATGCTGGTAGCGGTTCTATGGATTTGGCTCAGCAATTGTTTGACAAGACGTCAGAGAAAAATTTCGTAGTTGCAACTGCTATGGTCTCTGGGTATTCAAAACTAGGACGGGTTGAAGATGCACGCTTGATTTTTGACCAAATTGTTCAGAAGGACTTGGTCTGTTGGAGTGCTATGATATCTGGTTATGCTGAAAGTGATCGACCTCAAGAGGCACTTAGATTGTTTTCTGAAATGAAAGTTTCGGGATTAAGACCTGATCAAGTCACCATGTTGAGTGTCATTTCAGCTTGTGCTCATCTTGGTGCACTGGATCAAGCTAAATGGGTTCATTTATATGTTGATAAGAATGGATTTGGTGGAGCTTTGTCTGTCAACAATGCCCTCATTGATATGTATGCGAAATGTGGAAGCTTGGAAAGAGCAAGAGGGGTGTTTGAGAAAATGCCGAGAAGAAATGTGATAACTTGGACCACTATGATTAGTGCCTTTGCCATGCATGGGGATGCTAGTAATGCACTCAACTTCTTCAATCAAATGAAACTTGCCAATGTAGAGCCCAATGGGGTTACATTTGTGGGTGTGCTTTATGCTTGTAGTCATGCCGGGTTAGTTGAGCAGGGTAGACAAATCTTTGCATCGATGGCGAATGAATATAATATCACTCCTAAACACGAGCACTATGGTTGCATGGTTGACCTCTATGGCCGTGCAAATCTCTTGAGAGAAGCTCTTGAGGTTATAGAGACAATGCCCTTGGCACCCAATGTTGTCATTTGGGGATCTTTGATGGCAGCTTGTCAGATTCATGGTGAGATTGAATTGGGAGAATTTGCTGCAAAACAGGTTCTTGAGCTGGAACCAGATCATGATGGAGCCCTTGTCGTCTTATCAAACATCTATGCAAAAGAAAGAAGATGGGAAGAAGTTGGTATGGTGAGGAAAATAATGAAAAATAATGGCATCTCAAAGCAGAGGGGGTGTAGCAGGATAGAACTGAAGAATGAGATATATGAGTTTTTAATGGCAGATAGAAGTCATAAACAAGCAGATCAGATGTATGAGAAGCTAGATGAGGTAGTTAGGGAGGTGAAGCAAGTCGGTTATACGCCCAATACATGTAACGTTTTGGTTGATTTAGAAGAGGAGGAAAAGAAAGAAGCGATTCTCTGGCACAGTGAGAAGTTGGCTCTTTCTTTTGGTTTGATAGGTGCAAAAAAGGGTTCTTGCATTCGCATAGTTAAGAATCTCAGGATTTGTGAAGATTGCCATACTTTCATGAAGTTGGCTTCAAAGGTGTATGATAGAGAGATTATTGTCAGAGATAGGACTAGGTTTCACCATTACAAACATGGTTACTGTTCTTGTAAAGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

732

Amino Acids

82.36

Weight (kDa)

7.08

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	99 - 243	1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	191 - 238	1.3e-12	PPR repeat family
PPR_1	PF12854	191 - 220	4.7e-09	PPR repeat
PPR	PF01535	194 - 223	2.3e-08	PPR repeat
PPR_2	PF13041	324 - 372	8.3e-12	PPR repeat family
PPR	PF01535	326 - 356	1e-07	PPR repeat
PPR_2	PF13041	424 - 472	1.5e-10	PPR repeat family
PPR	PF01535	427 - 455	8.7e-06	PPR repeat
E_motif	PF20431	542 - 604	4.5e-20	E motif
DYW_deaminase	PF14432	640 - 732	4.8e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14820
fragaria_vesca	FvH4_4g16280
malus_domestica	MD16G1195600.v1.1
prunus_persica	Prupe.1G015600_v2.0.a1
pyrus_communis	pycom16g16480
rosa_chinensis	RchiOBHm_Chr4g0415871
rosa_laevigata	RLG00000008032
rosa_multiflora	Rmu_co8517385.1_g000001 Rmu_sc0002438.1_g000005
rosa_rugosa	Rorug04G0137100
rosa_samantha	Rh4BG196800 Rh4CG209900
rosa_wichuraiana	Rw4G016860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	312, 1576
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	2 cut(s)	783, 1441
AccII	CGCG	1 cut(s)	310
AciI	CCGC	6 cut(s)	172, 310, 392, 395, 714, 828
AclI	AACGTT	1 cut(s)	1941
AclWI	GGATC	2 cut(s)	1137, 1606
AcoI	YGGCCR	3 cut(s)	619, 715, 1522
AcsI	RAATTY	4 cut(s)	661, 727, 877, 1646
AcuI	CTGAAG	1 cut(s)	1835
AcyI	GRCGYC	1 cut(s)	866
AfaI	GTAC	2 cut(s)	515, 608
AfiI	CCNNNNNNNGG	2 cut(s)	528, 1317
AflIII	ACRYGT	1 cut(s)	1934
AgsI	TTSAA	9 cut(s)	193, 403, 640, 650, 915, 932, 1348, 1637, 2109
AhdI	GACNNNNNGTC	1 cut(s)	865
AjnI	CCWGG	2 cut(s)	546, 584
Alw21I	GWGCWC	4 cut(s)	805, 1114, 1126, 1497
Alw26I	GTCTC	2 cut(s)	907, 1556
Alw44I	GTGCAC	1 cut(s)	1122
AlwI	GGATC	2 cut(s)	1137, 1606
AoxI	GGCC	5 cut(s)	330, 405, 619, 715, 1522
ApaLI	GTGCAC	1 cut(s)	1122
ApeKI	GCWGC	3 cut(s)	518, 1610, 1652
ApoI	RAATTY	4 cut(s)	661, 727, 877, 1646
Asp700I	GAANNNNTTC	2 cut(s)	878, 1980
AspS9I	GGNCC	3 cut(s)	331, 481, 1287
AsuC2I	CCSGG	2 cut(s)	572, 1423
AsuHPI	GGTGA	7 cut(s)	67, 244, 1075, 1640, 1765, 1918, 2147
AvaII	GGWCC	2 cut(s)	481, 1287
BaeGI	GKGCMC	1 cut(s)	1126
BalI	TGGCCA	1 cut(s)	621
BanI	GGYRCC	2 cut(s)	312, 1576
BanII	GRGCYC	2 cut(s)	1377, 1696
BauI	CACGAG	1 cut(s)	1490
Bbv12I	GWGCWC	4 cut(s)	805, 1114, 1126, 1497
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	505, 1622, 1639
BccI	CCATC	6 cut(s)	285, 596, 1453, 1600, 1682, 1728
BceAI	ACGGC	4 cut(s)	300, 392, 702, 1509
BciT130I	CCWGG	2 cut(s)	548, 586
BclI	TGATCA	1 cut(s)	1075
BcnI	CCSGG	2 cut(s)	572, 1423
BcoDI	GTCTC	2 cut(s)	907, 1556
BfaI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
BisI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	5 cut(s)	396, 520, 716, 1612, 1654
Bme1390I	CCNGG	4 cut(s)	548, 572, 586, 1423
Bme18I	GGWCC	2 cut(s)	481, 1287
BmeRI	GACNNNNNGTC	1 cut(s)	865
BmgT120I	GGNCC	3 cut(s)	331, 481, 1287
BmiI	GGNNCC	5 cut(s)	314, 483, 1578, 1677, 1693
BmrFI	CCNGG	4 cut(s)	548, 572, 586, 1423
BmsI	GCATC	5 cut(s)	529, 925, 1312, 1463, 1788
BplI	GAGNNNNNCTC	2 cut(s)	1531, 1563
BpmI	CTGGAG	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	5 cut(s)	107, 1008, 1558, 1571, 1688
BpuMI	CCSGG	2 cut(s)	572, 1423
Bsa29I	ATCGAT	1 cut(s)	1457
BsaHI	GRCGYC	1 cut(s)	866
BsaI	GGTCTC	1 cut(s)	907
BsaJI	CCNNGG	1 cut(s)	1572
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 1683, 1713
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 1317
Bse1I	ACTGG	2 cut(s)	1131, 2198
Bse3DI	GCAATG	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	548, 586
BseCI	ATCGAT	1 cut(s)	1457
BseDI	CCNNGG	1 cut(s)	1572
BseGI	GGATG	6 cut(s)	98, 357, 544, 580, 673, 1327
BseLI	CCNNNNNNNGG	2 cut(s)	528, 1317
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	4 cut(s)	423, 788, 860, 2080
BseNI	ACTGG	2 cut(s)	1131, 2198
BseRI	GAGGAG	8 cut(s)	97, 100, 188, 191, 196, 370, 779, 1976
BseSI	GKGCMC	1 cut(s)	1126
BseX3I	CGGCCG	1 cut(s)	715
BseXI	GCAGC	3 cut(s)	505, 1622, 1639
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	512
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	2 cut(s)	172, 718
BshFI	GGCC	5 cut(s)	332, 407, 621, 717, 1524
BshNI	GGYRCC	2 cut(s)	312, 1576
BshVI	ATCGAT	1 cut(s)	1457
BsiEI	CGRYCG	2 cut(s)	172, 718
BsiHKAI	GWGCWC	4 cut(s)	805, 1114, 1126, 1497
BsiSI	CCGG	2 cut(s)	571, 1422
BslI	CCNNNNNNNGG	2 cut(s)	528, 1317
BsmAI	GTCTC	2 cut(s)	907, 1556
BsmI	GAATGC	2 cut(s)	635, 2046
BsnI	GGCC	5 cut(s)	332, 407, 621, 717, 1524
Bso31I	GGTCTC	1 cut(s)	907
Bsp1286I	GDGCHC	6 cut(s)	805, 1114, 1126, 1377, 1497, 1696
Bsp143I	GATC	6 cut(s)	1015, 1075, 1129, 1598, 1681, 1867
Bsp1720I	GCTNAGC	1 cut(s)	846
BspACI	CCGC	6 cut(s)	172, 310, 392, 395, 714, 828
BspANI	GGCC	5 cut(s)	332, 407, 621, 717, 1524
BspCNI	CTCAG	4 cut(s)	424, 789, 859, 2079
BspDI	ATCGAT	1 cut(s)	1457
BspFNI	CGCG	1 cut(s)	310
BspHI	TCATGA	2 cut(s)	1684, 2094
BspLI	GGNNCC	5 cut(s)	314, 483, 1578, 1677, 1693
BspPI	GGATC	2 cut(s)	1137, 1606
BspT107I	GGYRCC	2 cut(s)	312, 1576
BspTNI	GGTCTC	1 cut(s)	907
BsrBI	CCGCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	1131, 2198
BssECI	CCNNGG	1 cut(s)	1572
BssMI	GATC	6 cut(s)	1015, 1075, 1129, 1598, 1681, 1867
BssNI	GRCGYC	1 cut(s)	866
BssSI	CACGAG	1 cut(s)	1490
BssT1I	CCWWGG	1 cut(s)	1572
Bst2BI	CACGAG	1 cut(s)	1490
Bst2UI	CCWGG	2 cut(s)	548, 586
Bst4CI	ACNGT	5 cut(s)	499, 611, 816, 1994, 2177
Bst6I	CTCTTC	7 cut(s)	77, 98, 189, 194, 254, 645, 1953
BstACI	GRCGYC	1 cut(s)	866
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	544, 712, 940
BstDEI	CTNAG	5 cut(s)	432, 797, 846, 1034, 2066
BstENI	CCTNNNNNAGG	1 cut(s)	526
BstF5I	GGATG	6 cut(s)	98, 357, 544, 580, 673, 1327
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	6 cut(s)	1018, 1078, 1132, 1601, 1684, 1870
BstMAI	GTCTC	2 cut(s)	907, 1556
BstMBI	GATC	6 cut(s)	1015, 1075, 1129, 1598, 1681, 1867
BstMCI	CGRYCG	2 cut(s)	172, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	468, 809, 818, 1331, 1460
BstNI	CCWGG	2 cut(s)	548, 586
BstNSI	RCATGY	1 cut(s)	1938
BstSCI	CCNGG	4 cut(s)	546, 570, 584, 1421
BstSLI	GKGCMC	1 cut(s)	1126
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	505, 1622, 1639
BstX2I	RGATCY	1 cut(s)	1598
BstYI	RGATCY	1 cut(s)	1598
BstZI	CGGCCG	1 cut(s)	715
Bsu15I	ATCGAT	1 cut(s)	1457
BsuRI	GGCC	5 cut(s)	332, 407, 621, 717, 1524
BsuTUI	ATCGAT	1 cut(s)	1457
BtsCI	GGATG	6 cut(s)	98, 357, 544, 580, 673, 1327
BtsIMutI	CAGTG	3 cut(s)	812, 1124, 1999
Cac8I	GCNNGC	3 cut(s)	544, 712, 940
CciI	TCATGA	2 cut(s)	1684, 2094
Cfr13I	GGNCC	3 cut(s)	331, 481, 1287
ClaI	ATCGAT	1 cut(s)	1457
Csp6I	GTAC	2 cut(s)	514, 607
CviQI	GTAC	2 cut(s)	514, 607
DdeI	CTNAG	5 cut(s)	432, 797, 846, 1034, 2066
DpnI	GATC	6 cut(s)	1017, 1077, 1131, 1600, 1683, 1869
DpnII	GATC	6 cut(s)	1015, 1075, 1129, 1598, 1681, 1867
DriI	GACNNNNNGTC	1 cut(s)	865
EaeI	YGGCCR	3 cut(s)	619, 715, 1522
EagI	CGGCCG	1 cut(s)	715
Eam1104I	CTCTTC	7 cut(s)	77, 98, 189, 194, 254, 645, 1953
Eam1105I	GACNNNNNGTC	1 cut(s)	865
EarI	CTCTTC	7 cut(s)	77, 98, 189, 194, 254, 645, 1953
EclXI	CGGCCG	1 cut(s)	715
Eco130I	CCWWGG	1 cut(s)	1572
Eco24I	GRGCYC	2 cut(s)	1377, 1696
Eco31I	GGTCTC	1 cut(s)	907
Eco32I	GATATC	1 cut(s)	996
Eco47I	GGWCC	2 cut(s)	481, 1287
Eco52I	CGGCCG	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	1835
EcoNI	CCTNNNNNAGG	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	546, 584
EcoRV	GATATC	1 cut(s)	996
EcoT14I	CCWWGG	1 cut(s)	1572
EcoT22I	ATGCAT	1 cut(s)	1317
EcoT38I	GRGCYC	2 cut(s)	1377, 1696
ErhI	CCWWGG	1 cut(s)	1572
FalI	AAGNNNNNCTT	6 cut(s)	320, 352, 455, 487, 1017, 1049
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	1075
FblI	GTMKAC	2 cut(s)	783, 1441
Fnu4HI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
FokI	GGATG	6 cut(s)	85, 364, 551, 587, 680, 1334
FriOI	GRGCYC	2 cut(s)	1377, 1696
Fsp4HI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
FspBI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
GluI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	607
HaeIII	GGCC	5 cut(s)	332, 407, 621, 717, 1524
HapII	CCGG	2 cut(s)	571, 1422
Hin1I	GRCGYC	1 cut(s)	866
HincII	GTYRAC	4 cut(s)	6, 784, 1192, 1513
HindII	GTYRAC	4 cut(s)	6, 784, 1192, 1513
HindIII	AAGCTT	1 cut(s)	1228
HinfI	GANTC	8 cut(s)	179, 445, 476, 688, 785, 1621, 1981, 2062
HpaII	CCGG	2 cut(s)	571, 1422
HphI	GGTGA	7 cut(s)	67, 244, 1075, 1640, 1765, 1918, 2147
Hpy166II	GTNNAC	8 cut(s)	6, 142, 320, 784, 1124, 1192, 1442, 1513
Hpy8I	GTNNAC	8 cut(s)	6, 142, 320, 784, 1124, 1192, 1442, 1513
HpyAV	CCTTC	3 cut(s)	220, 397, 961
HpyCH4III	ACNGT	5 cut(s)	499, 611, 816, 1994, 2177
HpyCH4IV	ACGT	2 cut(s)	866, 1941
HpyF10VI	GCNNNNNNNGC	5 cut(s)	468, 809, 818, 1331, 1460
HpyF3I	CTNAG	5 cut(s)	432, 797, 846, 1034, 2066
HpySE526I	ACGT	2 cut(s)	866, 1941
Hsp92I	GRCGYC	1 cut(s)	866
Ksp22I	TGATCA	1 cut(s)	1075
Kzo9I	GATC	6 cut(s)	1015, 1075, 1129, 1598, 1681, 1867
LmnI	GCTCC	4 cut(s)	179, 297, 1178, 1691
Lsp1109I	GCAGC	3 cut(s)	505, 1622, 1639
LweI	GCATC	5 cut(s)	529, 925, 1312, 1463, 1788
MaeI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
MaeII	ACGT	2 cut(s)	866, 1941
MaeIII	GTNAC	4 cut(s)	1081, 1384, 1937, 2171
MalI	GATC	6 cut(s)	1017, 1077, 1131, 1600, 1683, 1869
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	6 cut(s)	1015, 1075, 1129, 1598, 1681, 1867
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	1 cut(s)	1598
MhlI	GDGCHC	6 cut(s)	805, 1114, 1126, 1377, 1497, 1696
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	8 cut(s)	661, 727, 774, 851, 877, 957, 1637, 1646
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	2 cut(s)	173, 779
MmeI	TCCRAC	3 cut(s)	186, 201, 962
Mox20I	TGGCCA	1 cut(s)	621
Mph1103I	ATGCAT	1 cut(s)	1317
MroXI	GAANNNNTTC	2 cut(s)	878, 1980
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	4 cut(s)	731, 1067, 1838, 2058
MslI	CAYNNNNRTG	4 cut(s)	1119, 1152, 1208, 1320
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	571, 1422
MspR9I	CCNGG	4 cut(s)	548, 572, 586, 1423
MunI	CAATTG	1 cut(s)	851
Mva1269I	GAATGC	2 cut(s)	635, 2046
MvaI	CCWGG	2 cut(s)	548, 586
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	5 cut(s)	468, 809, 818, 1331, 1460
NciI	CCSGG	2 cut(s)	572, 1423
NdeII	GATC	6 cut(s)	1015, 1075, 1129, 1598, 1681, 1867
NlaIV	GGNNCC	5 cut(s)	314, 483, 1578, 1677, 1693
NmeAIII	GCCGAG	1 cut(s)	1290
NmuCI	GTSAC	1 cut(s)	1081
NsiI	ATGCAT	1 cut(s)	1317
NspI	RCATGY	1 cut(s)	1938
PagI	TCATGA	2 cut(s)	1684, 2094
PciI	ACATGT	1 cut(s)	1934
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	2 cut(s)	635, 2046
PdmI	GAANNNNTTC	2 cut(s)	878, 1980
PfeI	GAWTC	6 cut(s)	445, 476, 688, 1621, 1981, 2062
PflFI	GACNNNGTC	1 cut(s)	974
PkrI	GCNGC	5 cut(s)	396, 520, 716, 1612, 1654
PleI	GAGTC	2 cut(s)	173, 779
PpsI	GAGTC	2 cut(s)	173, 779
PscI	ACATGT	1 cut(s)	1934
Psp1406I	AACGTT	1 cut(s)	1941
Psp6I	CCWGG	2 cut(s)	546, 584
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	546, 584
PspN4I	GGNNCC	5 cut(s)	314, 483, 1578, 1677, 1693
PspPI	GGNCC	3 cut(s)	331, 481, 1287
PsuI	RGATCY	1 cut(s)	1598
PsyI	GACNNNGTC	1 cut(s)	974
RsaI	GTAC	2 cut(s)	515, 608
RsaNI	GTAC	2 cut(s)	514, 607
RseI	CAYNNNNRTG	4 cut(s)	1119, 1152, 1208, 1320
SalI	GTCGAC	1 cut(s)	782
SaqAI	TTAA	4 cut(s)	731, 1067, 1838, 2058
SatI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
Sau3AI	GATC	6 cut(s)	1015, 1075, 1129, 1598, 1681, 1867
Sau96I	GGNCC	3 cut(s)	331, 481, 1287
SchI	GAGTC	2 cut(s)	173, 779
ScrFI	CCNGG	4 cut(s)	548, 572, 586, 1423
SduI	GDGCHC	6 cut(s)	805, 1114, 1126, 1377, 1497, 1696
SfaNI	GCATC	5 cut(s)	529, 925, 1312, 1463, 1788
SinI	GGWCC	2 cut(s)	481, 1287
SmiMI	CAYNNNNRTG	4 cut(s)	1119, 1152, 1208, 1320
SmlI	CTYRAG	5 cut(s)	122, 1023, 1537, 1550, 1667
SmoI	CTYRAG	5 cut(s)	122, 1023, 1537, 1550, 1667
Sse9I	AATT	8 cut(s)	661, 727, 774, 851, 877, 957, 1637, 1646
SsiI	CCGC	6 cut(s)	172, 310, 392, 395, 714, 828
SspMI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
StyD4I	CCNGG	4 cut(s)	546, 570, 584, 1421
StyI	CCWWGG	1 cut(s)	1572
TaaI	ACNGT	5 cut(s)	499, 611, 816, 1994, 2177
TaiI	ACGT	2 cut(s)	869, 1944
TaqI	TCGA	7 cut(s)	168, 263, 375, 413, 783, 1018, 1457
TasI	AATT	8 cut(s)	661, 727, 774, 851, 877, 957, 1637, 1646
TauI	GCSGC	2 cut(s)	397, 717
TfiI	GAWTC	6 cut(s)	445, 476, 688, 1621, 1981, 2062
Tru1I	TTAA	4 cut(s)	731, 1067, 1838, 2058
Tru9I	TTAA	4 cut(s)	731, 1067, 1838, 2058
TscAI	CASTG	3 cut(s)	819, 1131, 1999
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	3 cut(s)	518, 1610, 1652
Tsp45I	GTSAC	1 cut(s)	1081
TspRI	CASTG	3 cut(s)	819, 1131, 1999
Tth111I	GACNNNGTC	1 cut(s)	974
VneI	GTGCAC	1 cut(s)	1122
VpaK11BI	GGWCC	2 cut(s)	481, 1287
XagI	CCTNNNNNAGG	1 cut(s)	526
XapI	RAATTY	4 cut(s)	661, 727, 877, 1646
XceI	RCATGY	1 cut(s)	1938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2165
XmiI	GTMKAC	2 cut(s)	783, 1441
XmnI	GAANNNNTTC	2 cut(s)	878, 1980
XspI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
ZraI	GACGTC	1 cut(s)	867
Zsp2I	ATGCAT	1 cut(s)	1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.