Rorug04G0195100

Protein FAR1-RELATED SEQUENCE 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012608
Physical Location & Seq
Reverse (-)
33987761 .. 33988417
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0195100.1

Sequence Viewer

Length: 657 bp
ATGTTTCAGGCTACGGTTTTGGGCAGCGCCGCCGTCGCAGATGAGCTTCAGGGTGGCCGAGCAATTGTCGTTGAAGCCCATCGGGGGTTTCGGCGTTGCCTCGTTGAAATCGCCGACCATGGAATCGATGAAGGGTTCGCCGTAATGGGGCTCCGGTTGGGTGGCGGATCGGTTGTCCGGTTGAGCTGTGGATGTGATCTTCTGCGCGTCGGTGTTCTCCGCTGTGCAGGTGGTTTAACGGAGGACGGAAGGAATTCAACCCCGACAAGGACGAAGTCGGGGAACAGTGACAAAACCCAGCATTTGCAGATTAGCGGGTCCCATGTCGCGTCAGATGTCTTCGGCTTTCTTCCTCACTCGCCTGAAAACCGCGCGTGCTTTTCACGCGCCCGATTTAACCGTGGTCCACCTGGACCCTGGTCCATATTAGAATTTTCGAACATTAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGTCCTGCGCTGACCATATCGAAGGTATTGCTTTCGATTTGCTCCCTGTTGACAGACCCAAATCCTGATGATCCTTTGGTGCCAGAGATTGCCCATATGTACAAGACCGACAAGAACAAGTATGAGACCACTGCAAGGAGCTGGACCCAGAAGTACGCCATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

218

Amino Acids

23.57

Weight (kDa)

7.63

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 147 - 211 2.2e-21 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 568
AccII CGCG 5 cut(s) 207, 329, 372, 374, 387
AciI CCGC 5 cut(s) 30, 165, 220, 315, 370
AclWI GGATC 2 cut(s) 175, 554
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 253, 431
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 2 cut(s) 590, 644
AfiI CCNNNNNNNGG 4 cut(s) 84, 147, 267, 624
AgsI TTSAA 4 cut(s) 74, 107, 258, 478
AjnI CCWGG 2 cut(s) 409, 416
AluBI AGCT 3 cut(s) 46, 186, 630
AluI AGCT 3 cut(s) 46, 186, 630
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 2 cut(s) 175, 554
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 24, 456
ApoI RAATTY 2 cut(s) 253, 431
AseI ATTAAT 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 253
AspLEI GCGC 5 cut(s) 29, 207, 374, 389, 499
AspS9I GGNCC 5 cut(s) 318, 404, 413, 420, 633
AsuII TTCGAA 1 cut(s) 437
AvaII GGWCC 5 cut(s) 318, 404, 413, 420, 633
BanI GGYRCC 1 cut(s) 568
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 36, 468
BccI CCATC 1 cut(s) 87
BceAI ACGGC 2 cut(s) 17, 125
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BciT130I CCWGG 2 cut(s) 411, 418
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 1 cut(s) 655
BfoI RGCGCY 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 3 cut(s) 25, 30, 457
BlsI GCNGC 3 cut(s) 26, 31, 458
Bme1390I CCNGG 2 cut(s) 411, 418
Bme18I GGWCC 5 cut(s) 318, 404, 413, 420, 633
BmgT120I GGNCC 5 cut(s) 318, 404, 413, 420, 633
BmiI GGNNCC 6 cut(s) 152, 319, 320, 415, 570, 635
BmrFI CCNGG 2 cut(s) 411, 418
BoxI GACNNNNGTC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 331
Bpu14I TTCGAA 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 4 cut(s) 118, 400, 416, 648
BsaWI WCCGGW 2 cut(s) 153, 177
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 147, 267, 624
Bse3DI GCAATG 1 cut(s) 457
BseBI CCWGG 2 cut(s) 411, 418
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 4 cut(s) 118, 400, 416, 648
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 4 cut(s) 84, 147, 267, 624
BseMI GCAATG 1 cut(s) 457
BseXI GCAGC 2 cut(s) 36, 468
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 5 cut(s) 207, 329, 372, 374, 387
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 568
BshVI ATCGAT 1 cut(s) 126
BsiSI CCGG 2 cut(s) 154, 178
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 4 cut(s) 84, 147, 267, 624
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 3 cut(s) 167, 196, 559
Bsp19I CCATGG 2 cut(s) 118, 648
BspACI CCGC 5 cut(s) 30, 165, 220, 315, 370
BspANI GGCC 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 5 cut(s) 207, 329, 372, 374, 387
BspLI GGNNCC 6 cut(s) 152, 319, 320, 415, 570, 635
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 2 cut(s) 175, 554
BspT104I TTCGAA 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 457
BsrGI TGTACA 1 cut(s) 588
BssECI CCNNGG 4 cut(s) 118, 400, 416, 648
BssMI GATC 3 cut(s) 167, 196, 559
BssT1I CCWWGG 2 cut(s) 118, 648
Bst2UI CCWGG 2 cut(s) 411, 418
Bst4CI ACNGT 4 cut(s) 16, 287, 401, 486
BstAPI GCANNNNNTGC 1 cut(s) 462
BstAUI TGTACA 1 cut(s) 588
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 376
BstDSI CCRYGG 3 cut(s) 118, 400, 648
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 5 cut(s) 207, 329, 372, 374, 387
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 5 cut(s) 29, 207, 374, 389, 499
BstKTI GATC 3 cut(s) 170, 199, 562
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 3 cut(s) 167, 196, 559
BstMWI GCNNNNNNNGC 4 cut(s) 35, 384, 456, 462
BstNI CCWGG 2 cut(s) 411, 418
BstPAI GACNNNNGTC 1 cut(s) 418
BstSCI CCNGG 2 cut(s) 409, 416
BstUI CGCG 5 cut(s) 207, 329, 372, 374, 387
BstV1I GCAGC 2 cut(s) 36, 468
BstV2I GAAGAC 1 cut(s) 331
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 126
BtgI CCRYGG 3 cut(s) 118, 400, 648
BtsCI GGATG 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 3 cut(s) 292, 491, 618
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 5 cut(s) 29, 207, 374, 389, 499
Cfr13I GGNCC 5 cut(s) 318, 404, 413, 420, 633
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 2 cut(s) 196, 318
Csp6I GTAC 2 cut(s) 589, 643
CviAII CATG 3 cut(s) 119, 323, 649
CviJI RGCY 9 cut(s) 11, 46, 57, 77, 151, 186, 345, 630, 654
CviKI_1 RGCY 9 cut(s) 11, 46, 57, 77, 151, 186, 345, 630, 654
CviQI GTAC 2 cut(s) 589, 643
DpnI GATC 3 cut(s) 169, 198, 561
DpnII GATC 3 cut(s) 167, 196, 559
EaeI YGGCCR 1 cut(s) 55
EciI GGCGGA 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 118, 648
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 5 cut(s) 318, 404, 413, 420, 633
Eco57I CTGAAG 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 409, 416
EcoT14I CCWWGG 2 cut(s) 118, 648
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 2 cut(s) 118, 648
FaeI CATG 3 cut(s) 122, 326, 652
FaiI YATR 8 cut(s) 120, 324, 425, 506, 585, 587, 612, 650
FaqI GGGAC 1 cut(s) 304
FatI CATG 3 cut(s) 118, 322, 648
FauI CCCGC 1 cut(s) 308
FauNDI CATATG 1 cut(s) 585
Fnu4HI GCNGC 3 cut(s) 25, 30, 457
FokI GGATG 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 25, 30, 457
FspBI CTAG 1 cut(s) 655
GlaI GCGC 5 cut(s) 28, 206, 373, 388, 498
GluI GCNGC 3 cut(s) 25, 30, 457
GsaI CCCAGC 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 57
HapII CCGG 2 cut(s) 154, 178
HgaI GACGC 2 cut(s) 196, 318
HhaI GCGC 5 cut(s) 29, 207, 374, 389, 499
Hin1II CATG 3 cut(s) 122, 326, 652
Hin6I GCGC 5 cut(s) 27, 205, 372, 387, 497
HinP1I GCGC 5 cut(s) 27, 205, 372, 387, 497
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 2 cut(s) 123, 490
HpaII CCGG 2 cut(s) 154, 178
Hpy166II GTNNAC 2 cut(s) 407, 540
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 554
Hpy8I GTNNAC 2 cut(s) 407, 540
Hpy99I CGWCG 2 cut(s) 38, 212
HpyAV CCTTC 4 cut(s) 125, 243, 472, 505
HpyCH4III ACNGT 4 cut(s) 16, 287, 401, 486
HpyCH4V TGCA 3 cut(s) 227, 307, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 384, 456, 462
Hsp92II CATG 3 cut(s) 122, 326, 652
HspAI GCGC 5 cut(s) 27, 205, 372, 387, 497
KflI GGGWCCC 1 cut(s) 318
Kzo9I GATC 3 cut(s) 167, 196, 559
LmnI GCTCC 3 cut(s) 156, 536, 627
Lsp1109I GCAGC 2 cut(s) 36, 468
MaeI CTAG 1 cut(s) 655
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 169, 198, 561
MboI GATC 3 cut(s) 167, 196, 559
MboII GAAGA 3 cut(s) 191, 331, 341
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 63, 253, 431
MlyI GAGTC 1 cut(s) 499
MnlI CCTC 3 cut(s) 110, 235, 363
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 3 cut(s) 236, 396, 444
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 2 cut(s) 154, 178
MspR9I CCNGG 2 cut(s) 411, 418
MunI CAATTG 1 cut(s) 63
MvaI CCWGG 2 cut(s) 411, 418
MvnI CGCG 5 cut(s) 207, 329, 372, 374, 387
MwoI GCNNNNNNNGC 4 cut(s) 35, 384, 456, 462
NcoI CCATGG 2 cut(s) 118, 648
NdeI CATATG 1 cut(s) 585
NdeII GATC 3 cut(s) 167, 196, 559
NlaIII CATG 3 cut(s) 122, 326, 652
NlaIV GGNNCC 6 cut(s) 152, 319, 320, 415, 570, 635
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 287
NspV TTCGAA 1 cut(s) 437
PaqCI CACCTGC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 274
PkrI GCNGC 3 cut(s) 26, 31, 458
PleI GAGTC 1 cut(s) 498
PpsI GAGTC 1 cut(s) 498
PpuMI RGGWCCY 1 cut(s) 318
PshAI GACNNNNGTC 1 cut(s) 418
PshBI ATTAAT 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 409, 416
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 2 cut(s) 409, 416
PspN4I GGNNCC 6 cut(s) 152, 319, 320, 415, 570, 635
PspPI GGNCC 5 cut(s) 318, 404, 413, 420, 633
PspPPI RGGWCCY 1 cut(s) 318
PsyI GACNNNGTC 1 cut(s) 274
RsaI GTAC 2 cut(s) 590, 644
RsaNI GTAC 2 cut(s) 589, 643
SaqAI TTAA 3 cut(s) 236, 396, 444
SatI GCNGC 3 cut(s) 25, 30, 457
Sau3AI GATC 3 cut(s) 167, 196, 559
Sau96I GGNCC 5 cut(s) 318, 404, 413, 420, 633
SchI GAGTC 1 cut(s) 499
ScrFI CCNGG 2 cut(s) 411, 418
SduI GDGCHC 1 cut(s) 153
SetI ASST 6 cut(s) 48, 188, 232, 412, 516, 632
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 5 cut(s) 318, 404, 413, 420, 633
Sse9I AATT 3 cut(s) 63, 253, 431
SsiI CCGC 5 cut(s) 30, 165, 220, 315, 370
SspMI CTAG 1 cut(s) 655
StyD4I CCNGG 2 cut(s) 409, 416
StyI CCWWGG 2 cut(s) 118, 648
TaaI ACNGT 4 cut(s) 16, 287, 401, 486
TaqI TCGA 4 cut(s) 126, 437, 509, 524
TaqII GACCGA 1 cut(s) 611
TasI AATT 3 cut(s) 63, 253, 431
TatI WGTACW 1 cut(s) 588
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 3 cut(s) 236, 396, 444
Tru9I TTAA 3 cut(s) 236, 396, 444
TscAI CASTG 3 cut(s) 292, 491, 625
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 24, 456
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 2 cut(s) 254, 261
TspRI CASTG 3 cut(s) 292, 491, 625
Tth111I GACNNNGTC 1 cut(s) 274
VpaK11BI GGWCC 5 cut(s) 318, 404, 413, 420, 633
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 2 cut(s) 253, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.